NO03G04020, NO03G04020 (gene) Nannochloropsis oceanica

Overview
NameNO03G04020
Unique NameNO03G04020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1944
Alignment locationchr3:1171863..1173806 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat family protein with DHHC zinc finger domain
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1171863..1173806 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
The following BLAST results are available for this feature:
BLAST of NO03G04020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04020.1NO03G04020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572835gene_1598Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04020.1NO03G04020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04020 ID=NO03G04020|Name=NO03G04020|organism=Nannochloropsis oceanica|type=gene|length=1944bp
ACACATCGGCAGCCTCTCTGTCTGCATGTAAATAATGAAGGGTTTGTCAG
TGAGTTCGCATCCAATTGCGTGGTGCAAGATGAAGGTCTCTGAGGCATCA
CGAAGTCAATGGGCCTTGCGACACGAGGACATACGAAAGCACGACAACCT
CAATATGACCACGTGCAAGACCTCGTGTTACGCTTTAGTTTACACAAGCC
CCGGCACATTATTTGCAGACTGCTGAGTGCAGGCGAACTGATGGATAAGT
GGGCAGCGGATGCGGCATGATGAAGATGAAGAATGGGGGGGGGTTAACAA
CAAACTGTCTCCAAGCCAGCCGACACACTCCATGTTGTCCCATCCTCCCG
GCTAATTAAAGCGAGTTAGATGGCATATATTGGCGCTTTTTTTAGCACCA
TGGTGTGGCAGGCAGGGTCTTTCACTCTCTTCCGTGGGCCGTCTTTTTTC
AAGCCTTTCCTTCTTCTTCCTGTCTTCTCTTCACTCCCCTCTATGGTGCT
ATTGATTTCCCGCCATGCATGCATGACTTCTAGAATATTTACTAACGAAT
CTTTTTACGCGCTCTTATCTCTACGGCGCATTCAACAGCCACCCTGAATG
TATGTCCGTCCGGCTGGGCGCCCTTCGGGTACTTCGGCTCAAAGTTCTGC
AGCGCTTCAACCCAAGgtgagaactttccaccgttcccctcacattttac
atatcaaatctccttatatctgcgcacatccaatcacaacaatggaagCA
TACCTTCGTCTTCTACCCTTGTACCCCTCAAAAGCCGCGTGTTGGCCTCG
TACGAGCAGTTGGAAGGGACGCAGCTCAAGGGGCGTTCTGTTTATTTGGT
CCGAAAATCTTTAGTTGAAGACATTCTGAAGGGTGCTGATGCCAATAAGG
CCACAACTTCGCATCGTAGTGACAAGGAAAATCAAATTGTGGTTTCCATA
GGAGGCAATAATGATAAAGACCATCAGAAAGGAGGACTGCTTTCTGCAAC
GTCTTCCTCCCTCCCCTCCATGCCCCAAGCTCGGGACCAACTGGCTCTCC
TTCGCACTCCAGGCTTCTCCATTATACTAGCCGACCTTTTGGCGACCAAA
CAACGTAATTTCGACAATGATGTGAGCACCTGCCCGCCTCTCCCGATTGC
TGCCTTGTCTCACACCTTGACGGGCCTAGCTGTCGCCGATTCTCCAACCC
CTGAGCTCTCTCCTCAAGCGCTTGAGGCATTTGACGCCGTCCAACATGGA
GATATTTTTCGGCTTCGTGCCTTGCTCTCCTCCACCTCCACCTCCACCTC
CTCCTCCTCCTCCTCCTCCTCAATAGCAACGCCAAATGGTGCCATTTTAG
TGCGTGCCCGCCACCCGAGCCATGGGGGGTCCCTTCTCCATGTCGCTGCC
GGTTCGACCGCTGCATTCGCAGGAGCAGGCTCACCAAGAGAAGAAATGTG
TACCCTCCTCCTTGATGCCGGTGCGGATGTCAACGCCTTGAGTGATAACG
GCGCCACCCCCCTCCATTGGGCTGCGGGCTCGGGTTGCGCTGACCTGGTC
GCCCTCCTCCTCCGCCGAGGAGCAGATGCGCACTTGTGTACCTCTACATG
GGGAAAACAAGTTTTTGGGAAGGACAGTGGTCAGACGCCGAGTCATTGGG
CGGCGGCAAGTGGACATGCTGATGTGTTGAAGGTTCTAGGTAAGTGGGCC
CCACTGTCGCTGGGGGAAAAGGACGAGAGGGGCAGGACACCGACAGCCTT
GGCGGCAAGGGAGGGGAAGTGGGAGTGTGAGATGATTCTGGATGCGATGA
CGGAGGAGGAATATGTGTGGGTAGAGGTGTTGCAGGAAGGGCACGCTGTG
CGCGTGATGAGGGAGGAAGGAGGAGGACGAGGACGAGGAGGGAGGAGAAA
AACGGTGTAGCCCAACGCCTAAAGAAGAAGTGTAAACGTACCAT
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protein sequence of NO03G04020.1

>NO03G04020.1-protein ID=NO03G04020.1-protein|Name=NO03G04020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MSVRLGALRVLRLKVLQRFNPSIPSSSTLVPLKSRVLASYEQLEGTQLKG
RSVYLVRKSLVEDILKGADANKATTSHRSDKENQIVVSIGGNNDKDHQKG
GLLSATSSSLPSMPQARDQLALLRTPGFSIILADLLATKQRNFDNDVSTC
PPLPIAALSHTLTGLAVADSPTPELSPQALEAFDAVQHGDIFRLRALLSS
TSTSTSSSSSSSSIATPNGAILVRARHPSHGGSLLHVAAGSTAAFAGAGS
PREEMCTLLLDAGADVNALSDNGATPLHWAAGSGCADLVALLLRRGADAH
LCTSTWGKQVFGKDSGQTPSHWAAASGHADVLKVLGKWAPLSLGEKDERG
RTPTALAAREGKWECEMILDAMTEEEYVWVEVLQEGHAVRVMREEGGGRG
RGGRRKTV*
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Synonyms
Publications