NO03G03830, NO03G03830 (gene) Nannochloropsis oceanica

Overview
NameNO03G03830
Unique NameNO03G03830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1422
Alignment locationchr3:1128865..1130286 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1128865..1130286 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO03G03830 vs. NCBI_GenBank
Match: XP_005856178.1 (hypothetical protein NGA_2046700 [Nannochloropsis gaditana CCMP526] >EKU20182.1 hypothetical protein NGA_2046700 [Nannochloropsis gaditana CCMP526] >EWM29792.1 hypothetical protein Naga_100017g44 [Nannochloropsis gaditana])

HSP 1 Score: 333.6 bits (854), Expect = 1.000e-87
Identity = 204/455 (44.84%), Postives = 273/455 (60.00%), Query Frame = 0 
Query:   25 VMLPAIDLGMAVTIARAVYDVCDDVLDKLYEVTEKDCQAALDKTLKKSAALIKNLSDKLVEHQDQACESYV-KLQAQQYAIKRIPEGANRLPDGEWWSIEDETDE-----YGEGYRDLESGEGGVVLSKVTMAQDEAYAKKFRDHHSGMVGLLNDIEAACLDLTEEEMEELADVGLFCARIAAEYAQGFARRSLAILEKDYDWETAEEKRREREEHVTVEEATEEEIAELYRSRMEEPLPPFKTNTVKSGSKRSKTTTTSTHVKETKNSFFDDLCDPYALAPPPSSGRCRRGRGAPSRLLWQPVGPSLLQALLSTPQQFQSHPFKTTGLYAALLPVSGIIVFCLPGVLITDAVLQAMYKKVGHGVEVWIHDGKEICRLSWMVSRLSLRQTYRLANKQLRKTGADPMAALNWIGEMACEAVVHPLVTAGVVWERAKRAVVTAGKIVEWAQKQVMEK 474
            VMLPAIDLG+AV   R V+D CD +LDKLY++TEKDC+ AL+ TLK SA +I +L D L   +D     Y+ ++         IPEG++    G+  S    T       +     DLE G+ G++LS  T   +  +A +      G++ +L D+EAAC+D ++EE+E+LA+V LFCAR+  E  +G ARRSL +LEKD D E A    RE    + VEEAT EEIA LYRSR E       T      S+ +  ++ S                    APPP +GR RR +G PSRLLW P+GP L   L+S P+ F+SHP K TG  AA LPVSG++VFCLPGVLITDA  QA+Y++VG G+EVW+HDGKE+ RL+WMV+RLS+RQTYR   KQ+++ G DP+ A+N +     E V HP+ +A  +   AK  V    ++V WA  Q  EK
Sbjct:   12 VMLPAIDLGLAVAGVRMVHDACDALLDKLYQLTEKDCERALETTLKNSAKMIGSLYDGLKGIEDHMRAEYIQEIALDDVREGMIPEGSSETQVGKRGSTTKLTGAEPLYMFVNESVDLERGD-GLLLS--TEGGEGQWAPQ-----GGLLEVLKDLEAACVDFSKEEIEDLAEVLLFCARMTVECGEGLARRSLRLLEKDLDLEGAS---REEPAQLVVEEATAEEIAALYRSRGENASAASYTEMASESSRLASASSRSG-----------------LPAPPPRAGRYRRRQGPPSRLLWHPLGPLLFHFLVSAPEYFRSHPLKATGSLAAFLPVSGVLVFCLPGVLITDAAAQAIYRRVGPGLEVWVHDGKEVVRLTWMVTRLSVRQTYRFWRKQVKRAGLDPIMAVNGVVGALYEVVTHPVESAITMIVTAKATVSALQQVVRWAYSQATEK 438
The following BLAST results are available for this feature:
BLAST of NO03G03830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856178.11.000e-8744.84hypothetical protein NGA_2046700 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005514NSK005514Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03830.1NO03G03830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572780gene_1581Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100017g44gene817Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03830.1NO03G03830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03830 ID=NO03G03830|Name=NO03G03830|organism=Nannochloropsis oceanica|type=gene|length=1422bp
ATGGCATCGATTAAGACGAAAGGGCTGGGCAGCGGCGCCCCTACAGGTGG
AGGATATCAGGGAGAAGGCGACGTCATGCTGCCAGCAATCGATCTAGGAA
TGGCAGTAACGATCGCTCGGGCAGTGTACGACGTGTGCGACGACGTGTTG
GATAAGCTGTACGAAGTGACGGAGAAGGATTGCCAGGCTGCGTTGGACAA
GACCTTGAAAAAAAGTGCTGCGCTGATCAAGAATTTGTCGGATAAATTGG
TAGAACATCAAGACCAAGCCTGTGAGAGTTACGTAAAACTCCAAGCGCAA
CAGTATGCAATAAAGCGGATCCCAGAGGGTGCGAATCGGTTGCCTGATGG
AGAGTGGTGGTCCATTGAGGACGAAACGGATGAGTATGGGGAAGGATACC
GGGATTTGGAGAGCGGGGAAGGAGGGGTGGTGCTCTCGAAGGTGACGATG
GCGCAAGACGAAGCCTACGCAAAAAAGTTCCGTGACCACCATTCGGGAAT
GGTGGGGCTTTTGAATGACATTGAGGCAGCTTGCTTGGACTTAACGGAGG
AGGAGATGGAAGAACTGGCGGACGTGGGGTTGTTCTGCGCGAGGATTGCA
GCTGAATACGCTCAGGGGTTCGCCCGCCGGTCGTTGGCGATACTGGAGAA
GGATTATGATTGGGAGACGGCTGAGGAGAAGAGACGAGAAAGGGAGGAGC
ATGTAACAGTGGAAGAGGCTACGGAGGAGGAGATCGCAGAGCTATATCGG
AGCCGAATGGAGGAGCCACTGCCGCCTTTCAAGACCAACACCGTGAAAAG
CGGCAGCAAGAGGAGCAAAACCACTACCACCTCCACACACGTCAAAGAGA
CAAAGAATTCCTTTTTCGACGATCTCTGCGATCCTTACGCCCTCGCCCCT
CCACCCTCCTCAGGTCGCTGTCGCCGTGGTCGTGGCGCACCTTCTCGCCT
CCTCTGGCAACCGGTGGGGCCCTCCCTCCTCCAAGCCCTCCTTTCGACCC
CTCAGCAGTTCCAGTCACACCCGTTTAAAACGACGGGGTTGTATGCCGCT
CTCTTGCCAGTGAGTGGAATTATAGTGTTCTGTCTGCCTGGTGTATTAAT
CACAGATGCTGTGCTGCAAGCTATGTACAAGAAGGTCGGACATGGGGTAG
AGGTGTGGATACACGATGGCAAGGAAATTTGTCGGTTGAGCTGGATGGTT
TCACGTTTATCCTTGCGGCAGACGTATCGCCTTGCGAATAAGCAGTTGAG
GAAGACGGGCGCAGATCCGATGGCTGCTTTGAATTGGATAGGGGAAATGG
CATGTGAAGCCGTGGTGCACCCGCTTGTAACTGCTGGGGTAGTCTGGGAG
AGGGCCAAGCGGGCGGTGGTGACGGCGGGGAAGATTGTAGAGTGGGCGCA
GAAGCAGGTGATGGAGAAGTAG
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protein sequence of NO03G03830.1

>NO03G03830.1-protein ID=NO03G03830.1-protein|Name=NO03G03830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MASIKTKGLGSGAPTGGGYQGEGDVMLPAIDLGMAVTIARAVYDVCDDVL
DKLYEVTEKDCQAALDKTLKKSAALIKNLSDKLVEHQDQACESYVKLQAQ
QYAIKRIPEGANRLPDGEWWSIEDETDEYGEGYRDLESGEGGVVLSKVTM
AQDEAYAKKFRDHHSGMVGLLNDIEAACLDLTEEEMEELADVGLFCARIA
AEYAQGFARRSLAILEKDYDWETAEEKRREREEHVTVEEATEEEIAELYR
SRMEEPLPPFKTNTVKSGSKRSKTTTTSTHVKETKNSFFDDLCDPYALAP
PPSSGRCRRGRGAPSRLLWQPVGPSLLQALLSTPQQFQSHPFKTTGLYAA
LLPVSGIIVFCLPGVLITDAVLQAMYKKVGHGVEVWIHDGKEICRLSWMV
SRLSLRQTYRLANKQLRKTGADPMAALNWIGEMACEAVVHPLVTAGVVWE
RAKRAVVTAGKIVEWAQKQVMEK*
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Synonyms
Publications