NO03G03590, NO03G03590 (gene) Nannochloropsis oceanica

Overview
NameNO03G03590
Unique NameNO03G03590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1836
Alignment locationchr3:1066920..1068755 +

Link to JBrowse

Properties
Property NameValue
DescriptionMitochodrial transcription termination factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1066920..1068755 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
GO:0003690double-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
Homology
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BLAST of NO03G03590 vs. NCBI_GenBank
Match: EWM29832.1 (Mitochodrial transcription termination factor [Nannochloropsis gaditana])

HSP 1 Score: 371.3 bits (952), Expect = 5.700e-99
Identity = 302/595 (50.76%), Postives = 375/595 (63.03%), Query Frame = 0 
Query:    9 SRTQDMIMFGVALVVATTLMPGPSHAFVGLPRPAHHHRRRERPWIQQSCFSVSPASASTTIPTLFPTPTPDDMAIYSDRLHALDMLAPLQVAIIQSRLEHLHTLFPSENATSMAYRLPDLLRVEPTDLAHRVAERRVQLEALLPACRPLRMMAKVPALVFQDFDAQTKKVAENLRREFPEMDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLISSRIKHLESLFPTSIPGEIFTMISRKPTLLLTNSDRVIGPKLGHLKRLLGSAAALELCHAMPTIFNRDLDKVEERLGALIAHLPGIDVVRFLKLNPAFLTEPEGDVSGHLAALHTALPPGVELAKLLAQEPQLYTEKAAVLALKLREVRERTGLEVEEMTVRLGRDARFLIVPYGLLAARLRFWAAWQQVSAEGKD---AEEMKGKQAGEEERKKALKRINLSSLVGMPLDRFVALYPAYPHYLASKLGGDWTPALGGNNAFRLEKVYSGVLWRQTGLVYEKARFTGDHGGXXXXGYHQVNGGGGRQWKKGSQYSKQQSPGRSK 601
            +R   +++ G+ L+V T +   PS AF G  R      +     + Q C  + PA+A+TT+     TPTP+D+  ++ RL  L  LA   + +I+ RLEHL+ LFP ENATSM  R+PDLL VEP DLA RVAER+VQL ALLPACRPLR+MAK P LVFQDFD+Q K  AE L  E P MDL                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +++RIKHLE+LFP +   E+  MI+RKP+LLLT+ +RV+ PKL  L+ +LGSAAA ELC  MP+I +RDL++VE RL  L A +PG D+VRFL+ NPAFL+   G V   L AL +  P GVEL K+L +EP+LY E   VLALKL EV   T L  EE+  RL RDARFL+V YG LA+RLRF  A + V AE  +     +           + +L+RINL S+  MPL RF+ LYP YP YL  +LG   TP   G+N + LE+ +S +LWR               GG       Q+NG GGR  +  S   ++++ G  K
Sbjct:   11 TRYHPLLLCGLLLIVGTCVR--PSDAFTGQSRKFFCQWKECWKTLSQPCRGMEPAAATTTVS---GTPTPEDLIGHATRLQPLAGLAFFPLGLIERRLEHLYALFPRENATSMVCRVPDLLCVEPNDLAARVAERQVQLAALLPACRPLRLMAKAPILVFQDFDSQIKSTAERLEWELPGMDLARVVCPNPAVLTRAWDTVLFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALEPRQVAARIKHLEALFPAATRAEVAKMINRKPSLLLTSVERVLRPKLARLRNILGSAAAQELCQTMPSILSRDLEQVEARLKLLRAPVPGQDLVRFLRYNPAFLSSAPGAVGARLTALQSVFPRGVELGKMLIREPKLYAEDVDVLALKLAEVHAATRLSKEEVVERLRRDARFLLVSYGRLASRLRFLKALENVGAEPWEWARQGDPGXXXXXXXXVRPSLQRINLGSMASMPLGRFLHLYPLYPFYLLHELGRSPTPHKEGSNVYHLEEAHSQMLWRD--------------GGLRDSPVKQINGNGGRPGRPHS-IGRKENMGEEK 585
The following BLAST results are available for this feature:
BLAST of NO03G03590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29832.15.700e-9950.76Mitochodrial transcription termination factor [Nan... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005535NSK005535Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03590.1NO03G03590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572672gene_1554Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100017g68gene839Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03590.1NO03G03590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03590 ID=NO03G03590|Name=NO03G03590|organism=Nannochloropsis oceanica|type=gene|length=1836bp
ATGGTTAACTCAACCAAGCTTGAGTCCAGGACTCAAGATATGATCATGTT
TGGCGTCGCCCTTGTGGTTGCCACCACCCTCATGCCAGGGCCGAGTCACG
CGTTTGTAGGCCTTCCGCGGCCAGCACACCATCACAGAAGAAGAGAACGG
CCATGGATACAGCAATCCTGTTTCTCGGTATCTCCCGCCTCCGCAAGCAC
TACGATCCCCACCCTGTTCCCCACTCCCACTCCAGATGACATGGCCATCT
ACTCCGACCGCCTTCATGCCCTCGACATGCTGGCCCCTCTCCAAGTCGCC
ATCATCCAATCCCGTCTTGAACATCTTCACACTCTGTTCCCCAGTGAGAA
TGCCACCTCCATGGCTTACCGCCTCCCTGACCTGCTCCGCGTCGAACCCA
CCGACCTCGCGCACCGAGTGGCCGAGCGCCGAGTGCAACTTGAGGCCTTA
CTTCCCGCCTGTCGCCCCCTCCGTATGATGGCCAAGGTACCTGCTCTCGT
CTTCCAAGACTTTGACGCACAAACCAAGAAAGTTGCAGAGAACCTTCGAC
GGGAATTTCCCGAGATGGACCTAGCGCGGGTCGTGTACCAAAACCCCATT
GTCCTTGCCCGCGAATGGGACGCCGTCATCCTCCCAAAAATAACAGCCCT
CCGCGCCCTGTTCCCGAAGCAAGACCTCGGCAAAATGATTGCTCGTCGTC
CCGACCTCCTCTCACGAGACGTGGAAGGGAAAATGACAGAAAAACTTGCA
GGACTAGCCGCCCTCCTTCCCTCCGTCAACGTCCAAGAGCTCGTCGCCCG
CCAACCCGATCTCCTCGCCCGCGATCTCTCCCTCATCTCCTCCCGGATCA
AGCATCTCGAATCCCTCTTTCCTACCTCCATCCCTGGTGAGATTTTCACG
ATGATTAGCCGTAAACCCACTCTCCTACTTACCAACAGTGACCGTGTGAT
AGGCCCCAAACTGGGCCACCTCAAGCGCCTCCTCGGTTCGGCCGCCGCGC
TGGAACTCTGCCACGCGATGCCCACTATCTTCAATCGTGACCTAGATAAA
GTTGAAGAGCGCTTAGGGGCCTTGATCGCACACTTGCCTGGTATTGACGT
CGTCAGATTTTTGAAGTTAAACCCCGCGTTTTTGACTGAGCCCGAAGGAG
ACGTCAGTGGCCACTTGGCTGCCTTGCACACCGCCCTCCCTCCAGGGGTA
GAGCTCGCGAAGCTTCTCGCGCAAGAACCACAATTATACACGGAGAAAGC
GGCAGTCTTGGCGTTGAAGTTGAGGGAGGTCCGGGAGAGGACGGGCCTGG
AGGTAGAGGAGATGACGGTGCGACTAGGTAGGGATGCGAGATTTTTGATT
GTCCCTTATGGATTACTTGCGGCCCGTTTGCGTTTTTGGGCGGCCTGGCA
GCAGGTATCGGCGGAAGGAAAGGATGCAGAGGAAATGAAGGGGAAGCAGG
CAGGGGAAGAGGAGAGGAAGAAGGCGTTGAAAAGGATCAATCTGAGTTCG
TTGGTGGGCATGCCGTTGGACCGATTCGTGGCGCTCTATCCTGCCTACCC
TCACTACCTCGCCAGTAAGTTGGGGGGGGACTGGACGCCCGCTTTGGGAG
GCAATAATGCGTTTAGGCTTGAAAAGGTGTATTCGGGCGTGTTGTGGCGT
CAGACGGGGTTGGTGTATGAAAAGGCTCGTTTCACTGGTGACCATGGTGG
TGACCATGGTGGGGGCTACCATCAAGTGAATGGTGGAGGAGGGAGGCAAT
GGAAAAAGGGATCGCAGTATTCGAAGCAGCAATCACCGGGGAGGTCAAAA
CCATACAATGCGAAGCGTCCGGTCATGTCTCCTTAA
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protein sequence of NO03G03590.1

>NO03G03590.1-protein ID=NO03G03590.1-protein|Name=NO03G03590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=612bp
MVNSTKLESRTQDMIMFGVALVVATTLMPGPSHAFVGLPRPAHHHRRRER
PWIQQSCFSVSPASASTTIPTLFPTPTPDDMAIYSDRLHALDMLAPLQVA
IIQSRLEHLHTLFPSENATSMAYRLPDLLRVEPTDLAHRVAERRVQLEAL
LPACRPLRMMAKVPALVFQDFDAQTKKVAENLRREFPEMDLARVVYQNPI
VLAREWDAVILPKITALRALFPKQDLGKMIARRPDLLSRDVEGKMTEKLA
GLAALLPSVNVQELVARQPDLLARDLSLISSRIKHLESLFPTSIPGEIFT
MISRKPTLLLTNSDRVIGPKLGHLKRLLGSAAALELCHAMPTIFNRDLDK
VEERLGALIAHLPGIDVVRFLKLNPAFLTEPEGDVSGHLAALHTALPPGV
ELAKLLAQEPQLYTEKAAVLALKLREVRERTGLEVEEMTVRLGRDARFLI
VPYGLLAARLRFWAAWQQVSAEGKDAEEMKGKQAGEEERKKALKRINLSS
LVGMPLDRFVALYPAYPHYLASKLGGDWTPALGGNNAFRLEKVYSGVLWR
QTGLVYEKARFTGDHGGDHGGGYHQVNGGGGRQWKKGSQYSKQQSPGRSK
PYNAKRPVMSP*
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Synonyms
Publications