NO03G03520, NO03G03520 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G03520 vs. NCBI_GenBank
Match: EWM29853.1 (pseudouridine synthase [Nannochloropsis gaditana]) HSP 1 Score: 389.4 bits (999), Expect = 9.600e-105 Identity = 194/283 (68.55%), Postives = 222/283 (78.45%), Query Frame = 0 Query: 5 RSLAWVTAPAGRCAPGRMQLHRLYGSSGDII-GFRPGDGKEGIEAHEKAMKNFELEVVHDDADIIVVNKPAGALCVPGRFIQDSLVVRVAAHFGIKDFTRMVVHRLDQGTSGVLVLAKNDVALKNLHMQLRPEARNLTAGGDGGMQKKYVAVVEGDDLYPINGQINLPLSKDMDNPPKQMVDKMTGKPSLTEYTIRSRGADSSLVELRPITGRTHQLRVHLSCIGHPILGDPFYASLRVQNKAPGGRLCLHAESLAFRHPTTQERVSFSTQYPKVWDEGMVSV 287 RS AWVT G P YGSS I GFRPGDGKEGIEAH KAM+ FEL++++DD D+IVV KPAG+LCVPGRFIQDSLVVRVAAH IKDF RMVVHRLDQGTSGVLV A+ND ALKNLH Q RPEA+ +T G+ GMQK+YVA+VEG ++ G+I LPLSKD DNPPKQMVD GK S+T Y +R G D +LV L P+TGRTHQLRVHLSCIG+PILGDPFYA LRVQ KAPGGRLCLHAESL+FRHP TQER++F++ YP+ WD G+ V Sbjct: 80 RSWAWVT---GAFPPLLRTRSCPYGSSSMAIQGFRPGDGKEGIEAHIKAMEGFELQILYDDTDVIVVTKPAGSLCVPGRFIQDSLVVRVAAHAKIKDFARMVVHRLDQGTSGVLVFARNDAALKNLHAQFRPEAKRMTGNGNEGMQKRYVALVEG-NMDAFEGKIELPLSKDTDNPPKQMVDFAAGKASMTRYRVRRSGVDRNLVGLEPVTGRTHQLRVHLSCIGNPILGDPFYAPLRVQEKAPGGRLCLHAESLSFRHPRTQERLTFTSPYPREWDGGLEDV 358
BLAST of NO03G03520 vs. NCBI_GenBank
Match: CBN77710.1 (pseudouridylate synthases, 23S RNA-specific [Ectocarpus siliculosus]) HSP 1 Score: 188.0 bits (476), Expect = 4.200e-44 Identity = 104/247 (42.11%), Postives = 147/247 (59.51%), Query Frame = 0 Query: 34 IIGFRPGDGKEGIEAHEKAMKN--------FELEVVHDDADIIVVNKPAGALCVPGRFIQDSLVVRVAAHFGIKDFTRMVVHRLDQGTSGVLVLAKNDVALKNLHMQLRPEARNLTAGGDGGMQKKYVAVVEGDDLYPINGQINLPLSKDMDNPPKQMVDKMTGKPSLTEYTIRSRGADSSLVELRPITGRTHQLRVHLSCIGHPILGDPFYASLRVQNKAPGGRLCLHAESLAFRHPTTQERVSFS 273 ++G G GK G+ A E + LE++ D +I+V NKP+ LCVPGR +DSL R A G RM+VHRLD TSG +++A+ D ALK+L+ Q R + ++K+YVA+V G L+ G+++LPL ++ PP MV+ GKPSLT++ + R AD + VEL P++GR+HQLR+H++ IGHPILGD FY + + A GR LHA +L RHP T ER F+ Sbjct: 19 VVGEAGGKGK-GVAAEEMWLNGPFNAPVPPGPLEILFVDEEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFR----------ERQVRKRYVAIVHG-VLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGT--TDSLALAGRCLLHAHTLCLRHPKTGERTMFT 251
BLAST of NO03G03520 vs. NCBI_GenBank
Match: WP_012275919.1 (bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA [Shewanella halifaxensis] >ABZ75366.1 pseudouridine synthase [Shewanella halifaxensis HAW-EB4]) HSP 1 Score: 177.6 bits (449), Expect = 5.700e-41 Identity = 108/227 (47.58%), Postives = 136/227 (59.91%), Query Frame = 0 Query: 58 LEVVHDDADIIVVNKPAGALCVPGR--FIQDSLVVRVAAHFGIKDFTRMVVHRLDQGTSGVLVLAKNDVALKNLHMQLRPEARNLTAGGDGGMQKKYVAVVEGDDLYPINGQINLPLSKDMDNPPKQMVDKMTGKPSLTEYTIRSRGADSSLVELRPITGRTHQLRVHLSCIGHPILGDPFYASLRVQNKAPGGRLCLHAESLAFRHPTTQERVSFSTQYPKVWDEG 283 LE++H D DI+VVNKP+G L VPGR DS RV A F +VHRLD TSGV+V+A L++ +L+ + R D +K Y A V G + +G +NLPL D N PKQ VD GKPS T Y + SRG S+LV+L PITGR+HQLRVH+ +GHPILGD FYA + AP RL LHA+SL HP T+ER++FS P + EG Sbjct: 14 LEILHQDKDIMVVNKPSGLLSVPGRDPAHADSTYNRVLAEFP----HAKIVHRLDMATSGVIVVA----LLRSAESELKRQFR------DRETEKTYYARVAG-HVKETHGTVNLPLICDWPNRPKQKVDHKIGKPSQTHYEVISRGKRSTLVKLTPITGRSHQLRVHMMALGHPILGDNFYADPLAKRLAP--RLLLHAQSLTITHPYTKERMTFSCDAPFMNAEG 223
BLAST of NO03G03520 vs. NCBI_GenBank
Match: WP_012154001.1 (bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA [Shewanella pealeana] >ABV86065.1 pseudouridine synthase [Shewanella pealeana ATCC 700345]) HSP 1 Score: 174.9 bits (442), Expect = 3.700e-40 Identity = 109/227 (48.02%), Postives = 134/227 (59.03%), Query Frame = 0 Query: 58 LEVVHDDADIIVVNKPAGALCVPGR--FIQDSLVVRVAAHFGIKDFTRMVVHRLDQGTSGVLVLAKNDVALKNLHMQLRPEARNLTAGGDGGMQKKYVAVVEGDDLYPINGQINLPLSKDMDNPPKQMVDKMTGKPSLTEYTIRSRGADSSLVELRPITGRTHQLRVHLSCIGHPILGDPFYASLRVQNKAPGGRLCLHAESLAFRHPTTQERVSFSTQYPKVWDEG 283 LEV+H D DI+VVNKP+G L VPGR DS RV A F +VHRLD TSGV+V+A L++ +L+ + R D QK Y A V G + +G INLPL D N PKQ VD GKPS T Y + S G S+LV+L PITGR+HQLRVH+ +GHPILGD FYA + AP RL LHA+SL HP T+E ++FS P + EG Sbjct: 14 LEVLHQDKDIMVVNKPSGLLSVPGRDPAHADSTYTRVLAEFP----HAKIVHRLDMATSGVIVVA----LLRSAESELKRQFR------DRETQKTYYARVAG-HVKQSHGTINLPLICDWPNRPKQKVDHKIGKPSQTHYEVISYGKRSTLVKLTPITGRSHQLRVHMMALGHPILGDNFYADPLAKRLAP--RLLLHAQSLTITHPYTKEPMTFSCDAPFMNAEG 223
BLAST of NO03G03520 vs. NCBI_GenBank
Match: WP_025008931.1 (MULTISPECIES: bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA [Shewanella] >OXS01602.1 pseudouridine synthase [Shewanella algae] >PBQ29709.1 RNA pseudouridine synthase [Shewanella algae] >PSS72173.1 RNA pseudouridine synthase [Shewanella algae]) HSP 1 Score: 174.5 bits (441), Expect = 4.800e-40 Identity = 107/227 (47.14%), Postives = 130/227 (57.27%), Query Frame = 0 Query: 58 LEVVHDDADIIVVNKPAGALCVPGR--FIQDSLVVRVAAHFGIKDFTRMVVHRLDQGTSGVLVLAKNDVALKNLHMQLRPEARNLTAGGDGGMQKKYVAVVEGDDLYPINGQINLPLSKDMDNPPKQMVDKMTGKPSLTEYTIRSRGADSSLVELRPITGRTHQLRVHLSCIGHPILGDPFYASLRVQNKAPGGRLCLHAESLAFRHPTTQERVSFSTQYPKVWDEG 283 L++++ D DIIV+NKP+G L VPGR DS RV A VVHRLD TSGVL+LA A + L Q R D QK Y A V G + G I LPL D N P+Q VD GKPSLT Y + S+G S+LV+L PITGR+HQLRVH+ +GHPILGD FYA + AP RL LHA SL+ +HP + E +SFS P + EG Sbjct: 14 LDILYQDKDIIVINKPSGLLSVPGRDPAHHDSAYARVLAEHP----QAQVVHRLDMATSGVLLLALRRSAERELKRQFR----------DRETQKSYYARVAG-HIKATQGSIELPLICDWPNRPRQKVDHQVGKPSLTHYEVISKGRYSTLVKLIPITGRSHQLRVHMMALGHPILGDGFYADSWAKRLAP--RLLLHAASLSIKHPYSGEPMSFSAPVPFLAPEG 223
BLAST of NO03G03520 vs. NCBI_GenBank
Match: WP_071238448.1 (bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA [Shewanella algae] >OHY52845.1 RNA pseudouridine synthase [Shewanella algae] >PST67355.1 RNA pseudouridine synthase [Shewanella algae]) HSP 1 Score: 174.5 bits (441), Expect = 4.800e-40 Identity = 107/227 (47.14%), Postives = 130/227 (57.27%), Query Frame = 0 Query: 58 LEVVHDDADIIVVNKPAGALCVPGR--FIQDSLVVRVAAHFGIKDFTRMVVHRLDQGTSGVLVLAKNDVALKNLHMQLRPEARNLTAGGDGGMQKKYVAVVEGDDLYPINGQINLPLSKDMDNPPKQMVDKMTGKPSLTEYTIRSRGADSSLVELRPITGRTHQLRVHLSCIGHPILGDPFYASLRVQNKAPGGRLCLHAESLAFRHPTTQERVSFSTQYPKVWDEG 283 L++++ D DIIV+NKP+G L VPGR DS RV A VVHRLD TSGVL+LA A + L Q R D QK Y A V G + G I LPL D N P+Q VD GKPSLT Y + S+G S+LV+L PITGR+HQLRVH+ +GHPILGD FYA + AP RL LHA SL+ +HP + E +SFS P + EG Sbjct: 14 LDILYQDKDIIVINKPSGLLSVPGRDPAHHDSAYARVLAEHP----QAQVVHRLDMATSGVLLLALRRSAERELKRQFR----------DRETQKSYYARVAG-HIKATQGSIELPLICDWPNRPRQKVDHQVGKPSLTHYEVISKGRYSTLVKLIPITGRSHQLRVHMMALGHPILGDGFYADSWAKRLAP--RLLLHAASLSIKHPYSGEPMSFSAPVPFLAPEG 223
BLAST of NO03G03520 vs. NCBI_GenBank
Match: OGS98715.1 (RNA pseudouridine synthase [Gallionellales bacterium RIFCSPLOWO2_02_FULL_59_110] >OGT04931.1 RNA pseudouridine synthase [Gallionellales bacterium RIFCSPLOWO2_02_58_13] >OGT12181.1 RNA pseudouridine synthase [Gallionellales bacterium RIFCSPLOWO2_12_FULL_59_22]) HSP 1 Score: 174.1 bits (440), Expect = 6.300e-40 Identity = 103/227 (45.37%), Postives = 137/227 (60.35%), Query Frame = 0 Query: 54 KNFELEVVHDDADIIVVNKPAGALCVPGRFI--QDSLVVRVAAHFGIKDFTRMVVHRLDQGTSGVLVLAKNDVALKNLHMQLRPEARNLTAGGDGGMQKKYVAVVEGDDLYPINGQINLPLSKDMDNPPKQMVDKMTGKPSLTEYTI--RSRGADSSLVELRPITGRTHQLRVHLSCIGHPILGDPFYASLRVQNKAPGGRLCLHAESLAFRHPTTQERVSFSTQYP 277 +N +L++++ D +IV NKPAG L VPGR QD L RV A F ++VHRLD TSG+L+ A+ + L R A +QK+YVAVV G P +G+++LPL D N PKQ VD +GKPSLT Y + D++ VEL P+TGRTHQLRVH++ IGHPILGD Y Q++A GRL LHA +L+F HP + E +SFS++ P Sbjct: 12 RNNDLDLIYRDDSLIVANKPAGLLAVPGRGADKQDCLASRVQAEFP----DALIVHRLDMATSGLLLFARGAEMQRLLSQMFRERA----------VQKRYVAVVAGRVQTP-SGEVDLPLICDWPNRPKQKVDFASGKPSLTRYRLLTHDTNTDTTRVELEPVTGRTHQLRVHMAAIGHPILGDALYGE-NTQSRA--GRLLLHASALSFVHPLSGETLSFSSEPP 220
BLAST of NO03G03520 vs. NCBI_GenBank
Match: WP_044735152.1 (bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA [Shewanella algae]) HSP 1 Score: 173.3 bits (438), Expect = 1.100e-39 Identity = 106/227 (46.70%), Postives = 130/227 (57.27%), Query Frame = 0 Query: 58 LEVVHDDADIIVVNKPAGALCVPGR--FIQDSLVVRVAAHFGIKDFTRMVVHRLDQGTSGVLVLAKNDVALKNLHMQLRPEARNLTAGGDGGMQKKYVAVVEGDDLYPINGQINLPLSKDMDNPPKQMVDKMTGKPSLTEYTIRSRGADSSLVELRPITGRTHQLRVHLSCIGHPILGDPFYASLRVQNKAPGGRLCLHAESLAFRHPTTQERVSFSTQYPKVWDEG 283 L++++ D DIIV+NKP+G L VPGR DS RV A VVHRLD TSGVL+LA A + L Q R D QK Y A V G + G I LPL D N P+Q VD GKPSLT Y + S+G S+LV+L PITGR+HQLRVH+ +GHPILGD FYA + AP RL LHA SL+ +HP + + +SFS P + EG Sbjct: 14 LDILYQDKDIIVINKPSGLLSVPGRDPAHHDSAYARVLAEHP----QAQVVHRLDMATSGVLLLALRRSAERELKRQFR----------DRETQKSYYARVAG-HIKATQGSIELPLICDWPNRPRQKVDHQVGKPSLTHYEVISKGRYSTLVKLIPITGRSHQLRVHMMALGHPILGDGFYADSWAKRLAP--RLLLHAASLSIKHPYSGDPMSFSAPVPFLAPEG 223
BLAST of NO03G03520 vs. NCBI_GenBank
Match: WP_107005079.1 (bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA [Shewanella algae] >PSS70177.1 RNA pseudouridine synthase [Shewanella algae]) HSP 1 Score: 173.3 bits (438), Expect = 1.100e-39 Identity = 107/227 (47.14%), Postives = 129/227 (56.83%), Query Frame = 0 Query: 58 LEVVHDDADIIVVNKPAGALCVPGR--FIQDSLVVRVAAHFGIKDFTRMVVHRLDQGTSGVLVLAKNDVALKNLHMQLRPEARNLTAGGDGGMQKKYVAVVEGDDLYPINGQINLPLSKDMDNPPKQMVDKMTGKPSLTEYTIRSRGADSSLVELRPITGRTHQLRVHLSCIGHPILGDPFYASLRVQNKAPGGRLCLHAESLAFRHPTTQERVSFSTQYPKVWDEG 283 L++++ D DIIV+NKP+G L VPGR DS RV A VVHRLD TSGVL+LA A + L Q R D QK Y A V G + G I LPL D N P+Q VD GKPSLT Y + S+G S+LV L PITGR+HQLRVH+ +GHPILGD FYA + AP RL LHA SL+ +HP + E +SFS P + EG Sbjct: 14 LDILYQDKDIIVINKPSGLLSVPGRDPAHHDSAYARVLAEHP----QAQVVHRLDMATSGVLLLALRRSAERELKRQFR----------DRETQKSYYARVAG-HIKATQGSIELPLICDWPNRPRQKVDHQVGKPSLTHYEVISKGRYSTLVMLIPITGRSHQLRVHMMALGHPILGDGFYADSWAKRLAP--RLLLHAASLSIKHPYSGEPMSFSAPVPFLAPEG 223
BLAST of NO03G03520 vs. NCBI_GenBank
Match: WP_039035058.1 (MULTISPECIES: bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA [Shewanella] >OIN13414.1 RNA pseudouridine synthase [Shewanella algae]) HSP 1 Score: 172.6 bits (436), Expect = 1.800e-39 Identity = 106/227 (46.70%), Postives = 130/227 (57.27%), Query Frame = 0 Query: 58 LEVVHDDADIIVVNKPAGALCVPGR--FIQDSLVVRVAAHFGIKDFTRMVVHRLDQGTSGVLVLAKNDVALKNLHMQLRPEARNLTAGGDGGMQKKYVAVVEGDDLYPINGQINLPLSKDMDNPPKQMVDKMTGKPSLTEYTIRSRGADSSLVELRPITGRTHQLRVHLSCIGHPILGDPFYASLRVQNKAPGGRLCLHAESLAFRHPTTQERVSFSTQYPKVWDEG 283 L++++ D DIIV+NKP+G L VPGR DS RV A VVHRLD TSGVL+LA A + L Q R D QK Y A V G + G I LPL D N P+Q VD GKPSLT Y + S+G S+LV+L PITGR+HQLRVH+ +GHPILGD FYA + AP RL LHA SL+ +HP + + +SFS P + EG Sbjct: 14 LDILYQDKDIIVINKPSGLLSVPGRDPAHHDSAYARVLAEHP----QAQVVHRLDMATSGVLLLALRRSAERELKRQFR----------DRETQKSYYARVAG-HIKANQGSIELPLICDWPNRPRQKVDHQVGKPSLTHYEVISKGRYSTLVKLIPITGRSHQLRVHMMALGHPILGDGFYADSWAKRLAP--RLLLHAASLSIQHPYSGDPMSFSAPVPFLTPEG 223 The following BLAST results are available for this feature:
BLAST of NO03G03520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G03520 ID=NO03G03520|Name=NO03G03520|organism=Nannochloropsis oceanica|type=gene|length=867bpback to top protein sequence of NO03G03520.1 >NO03G03520.1-protein ID=NO03G03520.1-protein|Name=NO03G03520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bpback to top Synonyms
Publications
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