NO03G03480, NO03G03480 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G03480 vs. NCBI_GenBank
Match: EWM29791.1 (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 409.5 bits (1051), Expect = 6.900e-111 Identity = 204/223 (91.48%), Postives = 213/223 (95.52%), Query Frame = 0 Query: 1 MRSITIVLAATAALSSAFVMPSTPKAPATQLSVKSKAVPFLEAPKALDGSLPADVGFDPLGLSDIGFDFTYLMVPTKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKYAGYNAVQAHDVFVKSGDMTVGLLAIGFLEVVMGAAIYEMSKGSDRAAGEFSFDPLGLGKDPSKYARYQVSEIKNGRLAMLAFGGIATQAVLTNSGFPYYQ 224 MRS+ ++A TAA+S+AFV+PS PKAP TQL+ KSKAVPFLEAPKALDGSLPADVGFDPL LSDI FDFTYLMVPTKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKYAGYNAVQAHDVFVKSGDMTVGLLAIGFLEVVMGA IYEMSKGSDRAAG+FSFDPLGLGKDP+KYARYQVSEIKNGRLAMLAFGGIATQAVLTN GFPYYQ Sbjct: 1 MRSVAFIVATTAAMSTAFVLPSAPKAPQTQLAAKSKAVPFLEAPKALDGSLPADVGFDPLNLSDIDFDFTYLMVPTKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKYAGYNAVQAHDVFVKSGDMTVGLLAIGFLEVVMGAGIYEMSKGSDRAAGDFSFDPLGLGKDPAKYARYQVSEIKNGRLAMLAFGGIATQAVLTNGGFPYYQ 223
BLAST of NO03G03480 vs. NCBI_GenBank
Match: CBJ33498.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 193.4 bits (490), Expect = 7.800e-46 Identity = 106/229 (46.29%), Postives = 148/229 (64.63%), Query Frame = 0 Query: 1 MRSITIVLAATAALSSAFVMPSTPKAPATQLSV-KSKAVPFLEAPKALDGSLPADVGFDPLGLSDIGFDFTYLMVP------TKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKYAGYN-AVQAHDVFVKSGDMTVGLLAIGFLEVVMGAAIYEMSKGSDRAAGEFSFDPLGLGKDPSKYARYQVSEIKNGRLAMLAFGGIATQAVLTNSGFPY 222 + S+ ++ A ++ M ++PA LS+ SKA+PF+ P+ LDG++P D+GFDPLGLS I DF+ +VP + S++ + L W REAE+KHGR A LAV+GW+ VD G+R P +YA + +V AHD V SG+MT+ LL + LE+V GAAI+ + GS R G+F DPL L +P+K ARY+++EI++ RLAM A GGIATQAVL FPY Sbjct: 5 LASLAALVGGACAFTAPMPMHRAARSPAGALSMANSKAIPFMPQPENLDGTMPGDIGFDPLGLSKIDIDFSEFIVPGAAVMREEGVPSKSPVDTLYWMREAELKHGRVAQLAVVGWILVDQGVRFPGDQYAAISQSVGAHDPMVASGNMTLLLLVVFLLEMVGGAAIFGAASGSGRQPGDFGLDPLNLTSNPAKKARYELNEIQHCRLAMSAIGGIATQAVLNGGDFPY 233
BLAST of NO03G03480 vs. NCBI_GenBank
Match: XP_009038020.1 (hypothetical protein AURANDRAFT_69840 [Aureococcus anophagefferens] >EGB07402.1 hypothetical protein AURANDRAFT_69840 [Aureococcus anophagefferens]) HSP 1 Score: 190.7 bits (483), Expect = 5.000e-45 Identity = 100/222 (45.05%), Postives = 147/222 (66.22%), Query Frame = 0 Query: 1 MRSITIVLAATAALSSAFVMPSTPKAPATQLSVKSKAVPFLEAPKALDGSLPADVGFDPLGLSDIGFDFTYLMVPTKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKYAGYNAVQAHDVFVKSGDMTVGLLAIGFLEVVMGAAIYEMSKGSDRAAGEFSFDPLGLGKDPSKYARYQVSEIKNGRLAMLAFGGIATQAVLTNSGFPYY 223 MR++T++ AT+ S V+PST K T+ KSK++PFLE P ALDG+LP DVGFDPL +D+ ++ +++P K + L + W REAE+KHGR MLA++G++ VD G+ P A+Y G +++QAHD V SG+M LLA+G LE++ + + +KGS R AG+FS+DPL + +K + +EI++ RLAMLAF G+ TQ+ L GFPY+ Sbjct: 1 MRAVTLLACATSVAS--LVVPST-KTSLTRCDAKSKSMPFLECPAALDGTLPGDVGFDPLRFTDLDWNMAEVIIPAKSISATESLPMVYWMREAELKHGRLCMLAIVGYLTVDAGIHFPGARYEGLSSLQAHDAMVASGNMGFMLLAVGVLELLSMVGVVQAAKGSGRKAGDFSWDPLYFTQG-AKADFFFEAEIQHARLAMLAFSGLVTQSALLEKGFPYF 218
BLAST of NO03G03480 vs. NCBI_GenBank
Match: XP_002184127.1 (protein fucoxanthin chl a/c protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44305.1 protein fucoxanthin chl a/c protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 174.9 bits (442), Expect = 2.900e-40 Identity = 103/198 (52.02%), Postives = 123/198 (62.12%), Query Frame = 0 Query: 34 KSKAVPFLEAPKALDGSLPADVGFDPLGLSDIGFDFTYLMVPTKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKYAGY----NAVQAHDVFVKSGDMTVGLLAIGFLEVVMGAAIYEMSKG--SDRAAGEFSFD-PLGLGKDPSKYARYQVSEIKNGRLAMLAFGGIATQAVL--TNSGFPYY 223 +S+AVPFL P LDGS P D GFDP LS I +F + P W+E+ G+S L W REAEIKH R AMLAV GW+A D G+R P A A Y NA AH++ V G MTV LLAIGF+E GAA+ ++SKG +DR AG+F FD L GK + E+ NGRLAMLAFGGIATQ L FPY+ Sbjct: 51 RSRAVPFLPRPINLDGSSPGDQGFDPFYLSSIPKNFAGFLQPPSWEET-GGISTLYWMREAEIKHCRVAMLAVTGWIATDFGVRFPGAG-APYTDIPNAYNAHNILVDQGTMTVMLLAIGFVEFCTGAALVQVSKGELTDRDAGDFGFDGGLLKGKSAEAIKTMKTKEVNNGRLAMLAFGGIATQTALGEATQSFPYF 246
BLAST of NO03G03480 vs. NCBI_GenBank
Match: GAX25838.1 (light-harvesting complex I chlorophyll a/b binding protein 2 [Fistulifera solaris]) HSP 1 Score: 173.7 bits (439), Expect = 6.400e-40 Identity = 105/240 (43.75%), Postives = 145/240 (60.42%), Query Frame = 0 Query: 1 MRSITIVLAATAALSSAFVMPSTPKAPATQLSV-------------KSKAVPFLEAPKALDGSLPADVGFDPLGLSDIGFDFTYLMVPTKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKY---AGYNAVQAHDVFVKSGDMTVGLLAIGFLEVVMGAAIYEMSKG-SDRAAGEFSFDPLGL-GKDPSKYARYQVSEIKNGRLAMLAFGGIATQAVLTNSGFPYY 223 M+S + ++ A A S++ P+ K+ +T L +SKAVP+L P LDG+LP D GFDP LS I +F + P W+E++ G+ L W REAE KHGR AMLAV+GW+ D +RLP +++ A N+ AH++ V+ G M V L A+G +EV GAA+ ++SKG SDR A +F FD L GK ++ + + EI NGRLAMLAFGGIATQ L + FPY+ Sbjct: 1 MKSFSALVVAAMAASASXFAPTATKSTSTALKAEERLWNSMVDKTQRSKAVPYLPRPINLDGTLPGDQGFDPFYLSSIPKNFAGFIQPPSWEETK-GIPTLYWMREAEAKHGRMAMLAVVGWIVAD-SIRLPFSQFSFDAIPNSYNAHNILVEQGTMVVFLHALGLVEVCNGAALVQVSKGESDREAADFGFDGGYLKGKTEAQIFKLKTQEINNGRLAMLAFGGIATQTALGHPDFPYF 238
BLAST of NO03G03480 vs. NCBI_GenBank
Match: GAX09492.1 (light-harvesting complex I chlorophyll a/b binding protein 2 [Fistulifera solaris]) HSP 1 Score: 172.2 bits (435), Expect = 1.900e-39 Identity = 96/194 (49.48%), Postives = 127/194 (65.46%), Query Frame = 0 Query: 34 KSKAVPFLEAPKALDGSLPADVGFDPLGLSDIGFDFTYLMVPTKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKY---AGYNAVQAHDVFVKSGDMTVGLLAIGFLEVVMGAAIYEMSKG-SDRAAGEFSFDPLGL-GKDPSKYARYQVSEIKNGRLAMLAFGGIATQAVLTNSGFPYY 223 +SKAVP+L P LDG+LP D GFDP LS I +F + P W+E++ G+ L W REAE KHGR AMLAV+GW+ D +RLP +++ A N+ AH++ V+ G M V L A+G +EV GAA+ ++SKG SDR A +F FD L GK ++ + + EI NGRLAMLAFGGIATQ L + FPY+ Sbjct: 97 RSKAVPYLPRPINLDGTLPGDQGFDPFYLSSIPKNFAGFIQPPSWEETK-GIPTLYWMREAEAKHGRMAMLAVVGWIVAD-SIRLPFSQFSFDAIPNSYNAHNILVEQGTMVVFLHALGLVEVCNGAALVQVSKGESDREAADFGFDGGYLKGKTEAQIFKLKTQEINNGRLAMLAFGGIATQTALGHPDFPYF 288
BLAST of NO03G03480 vs. NCBI_GenBank
Match: XP_002287251.1 (fucoxanthin chlorophyll a/c light-harvesting protein [Thalassiosira pseudonana CCMP1335] >EED94694.1 fucoxanthin chlorophyll a/c light-harvesting protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 170.2 bits (430), Expect = 7.100e-39 Identity = 100/216 (46.30%), Postives = 126/216 (58.33%), Query Frame = 0 Query: 12 AALSSAFVMPSTPKAPATQLSVKSKAVPFLEAPKALDGSLPADVGFDPLGLSDIGFDFTYLMVPTKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVA--KYAGY-NAVQAHDVFVKSGDMTVGLLAIGFLEVVMGAAIYEMSKG-SDRAAGEFSFDPLGL--GKDPSKYARYQVSEIKNGRLAMLAFGGIATQAVLTNSGFPY 222 A +S MP + +SKA+PFL P LDGS DVGFDP LS I +F + P W+E+ GL L W REAE+KHGR AM+A GW+A D G+R P A Y NA AH++ V SG M V L IGF+E+ A + E+SKG +DR AG+F FDPLG GK ++ E++NGR AM+AFGG+ATQ L FPY Sbjct: 26 AVKTSLDAMPDRMWNKMVDKTQRSKAMPFLPRPINLDGSYVGDVGFDPFYLSSIDKNFAGFIQPPSWEET-NGLPTLYWMREAELKHGRIAMMAFAGWLATDFGVRFPGAGEPYTSVPNAFSAHNIMVDSGAMWVMLSLIGFIEISTAAVLVEVSKGENDREAGDFCFDPLGFCKGKSADAINTMKLKELQNGRAAMMAFGGLATQTALGGVDFPY 240
BLAST of NO03G03480 vs. NCBI_GenBank
Match: XP_002287768.1 (fucoxanthin chlorophyll a/c protein [Thalassiosira pseudonana CCMP1335] >EED95211.1 fucoxanthin chlorophyll a/c protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 158.7 bits (400), Expect = 2.100e-35 Identity = 96/219 (43.84%), Postives = 125/219 (57.08%), Query Frame = 0 Query: 12 AALSSAFVMPSTPKAPATQLSVKSKAVPFLEAPKALDGSLPADVGFDPLGLSDIGFDFTYLMVPTKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVD-----MGLRLPVAKY-AGYNAVQAHDVFVKSGDMTVGLLAIGFLEVVMGAAIYEMSKG-SDRAAGEFSFDPLGL--GKDPSKYARYQVSEIKNGRLAMLAFGGIATQAVLTNSGFPY 222 A +S MP + +S ++PFL P LDGS DVGFDP LS I +F + P W+E+ GL L W REAE+KHGR AMLA GW+A D + LR P A Y A N++ AHD+ V G + L+AIG +EV + E+SKG SDRAAG+F DPL GK + ++ E++NGR AM+AF G+ TQA L + FPY Sbjct: 25 AVKTSLDAMPDRMWNKMVDKTQRSASMPFLPRPINLDGSYVGDVGFDPFYLSSIDKNFAGFIQPPSWEET-NGLPTLYWMREAELKHGRVAMLAWTGWLATDGALGPVPLRFPGAAYQAVPNSLSAHDIMVDQGSLGFMLVAIGIIEVCCATVLVEVSKGESDRAAGDFKLDPLQFLKGKSDADINTMKLKELQNGRAAMMAFAGVVTQAALGGTDFPY 242
BLAST of NO03G03480 vs. NCBI_GenBank
Match: EJK77608.1 (hypothetical protein THAOC_00550 [Thalassiosira oceanica]) HSP 1 Score: 156.8 bits (395), Expect = 8.100e-35 Identity = 104/243 (42.80%), Postives = 137/243 (56.38%), Query Frame = 0 Query: 3 SITIVLAATAALS-SAFVMPSTPKAPATQLSV--------------KSKAVPFLEAPKALDGSLPADVGFDPLGLSDIGFDFTYLMVPTKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVD-----MGLRLPVAKYAGY-NAVQAHDVFVKSGDMTVGLLAIGFLEVVMGAAIYEMSKG-SDRAAGEFSFDPLGL--GKDPSKYARYQVSEIKNGRLAMLAFGGIATQAVLTNSGFPY 222 S T+ +AA+ A S +AF ST A T L +S A+PFL P LDGS DVGFDP LS I +F + P +W++ G+ L W REAE+KHGR MLA LG++A D + LR P A Y N+ +AH+ V+ G M LL +GF+E M A+ E++KG SDRAAG+F DPL GK + ++ E++NGRLAMLAF G+ TQA L + FPY Sbjct: 4 STTLAIAASLASSATAFAPASTNGAAKTSLDAMPDRMWDSMVDKTERSAALPFLPRPINLDGSYVGDVGFDPFYLSSIPKNFAGFIQPPQWEDVE-GIPTLYWMREAELKHGRVTMLAWLGFLATDGAFGPVPLRFPGAIYHDVANSYEAHNAMVEQGSMGFLLLVVGFVEFCMSGALVEVAKGESDRAAGDFKLDPLQFLKGKSEEEVNAMKLKELQNGRLAMLAFSGVVTQAALGGTEFPY 245
BLAST of NO03G03480 vs. NCBI_GenBank
Match: XP_009038907.1 (putative plastid light harvesting protein isoform 51 [Aureococcus anophagefferens] >EGB06328.1 putative plastid light harvesting protein isoform 51 [Aureococcus anophagefferens]) HSP 1 Score: 154.1 bits (388), Expect = 5.200e-34 Identity = 101/224 (45.09%), Postives = 124/224 (55.36%), Query Frame = 0 Query: 1 MRSITIVLAATAALSSAFVMPSTPKAPATQLSVKSKAVPFLEAPKALDGSLPADVGFDPLGLSDIGFDFTYLMVPTKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKYAGYNAVQAHDVFVKSGDMTVGLLAIGFLEVVMGAAIYEMSKGSDRAAGEFSFDPL--GLGKDPSKYARYQVSEIKNGRLAMLAFGGIATQAVLTNSGFPYY 223 M ++LAATA +SA V P + T + KS ++PFLEA L G + + GFDPLGLS VP + W RE+E+KHGR MLA LG+VA DMG LP + +++ AHDV V G MT + I E + AI EM GS R G+F FDPL G G DP Q+ EI+NGRLAMLAF GI TQAVLT GFPY+ Sbjct: 1 MARTALLLAATATCASALVAPVSQTTSLTSMHEKSASMPFLEASPNLKGYIGGEKGFDPLGLS--------YWVP------------MDWLRESELKHGRVCMLATLGFVATDMGFVLP-GEMHQVSSIGAHDVAVAQGSMTQITIFIAICECIGYLAILEMLDGSGRKPGDFGFDPLQIGGGDDP----EMQLREIENGRLAMLAFAGIVTQAVLTGKGFPYF 199 The following BLAST results are available for this feature:
BLAST of NO03G03480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G03480 ID=NO03G03480|Name=NO03G03480|organism=Nannochloropsis oceanica|type=gene|length=672bpback to top protein sequence of NO03G03480.1 >NO03G03480.1-protein ID=NO03G03480.1-protein|Name=NO03G03480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bpback to top Synonyms
Publications
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