NO03G03150, NO03G03150 (gene) Nannochloropsis oceanica

Overview
NameNO03G03150
Unique NameNO03G03150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length807
Alignment locationchr3:940936..941742 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:940936..941742 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G03150 vs. NCBI_GenBank
Match: EWM29722.1 (hypothetical protein Naga_100022g24 [Nannochloropsis gaditana])

HSP 1 Score: 75.5 bits (184), Expect = 8.800e-11
Identity = 42/84 (50.00%), Postives = 49/84 (58.33%), Query Frame = 0 
Query:    1 MWSQNDHPSHREGGRQXXXXXXXXXXXXXXXXXRWHNSRSFLDQDG--GMDITLGEGHQPAGEKLVHKDFYNNFGDDFDLRDLS 83
            MWS  D+   REGGRQ                 RW  SR FL++DG  GMD+  G+G+   GEK VHK FYNNFGD F+LRDLS
Sbjct:    1 MWSTTDYAPPREGGRQRVRGFKVSSTGKDSSAERW-QSRGFLEEDGASGMDLAAGDGYL-GGEKQVHKGFYNNFGDIFNLRDLS 82
The following BLAST results are available for this feature:
BLAST of NO03G03150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29722.18.800e-1150.00hypothetical protein Naga_100022g24 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03150.1NO03G03150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03150.1NO03G03150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03150 ID=NO03G03150|Name=NO03G03150|organism=Nannochloropsis oceanica|type=gene|length=807bp
ACAGGCGCCTCGAACCAGCTGCCAGCATTATGTGGAGTCAGAATGATCAC
CCATCCCACCGTGAAGGTGGGCGGCAGCGGGAACGAGGGGCGGACAAGTT
CGGTGGGGACAAACGACTGGGCGGAGACCGGTGGCATAATAGCCGCTCCT
TTCTTGACCAAGACGGCGGCATGGACATAACGCTTGGCGAGGGCCACCAG
CCAGCCGGGGAAAAGCTGGTGCACAAGGACTTTTACAACAACTTTGGGGA
CGATgtgcgtaccgcatacacggggggaaggcggggaagggggaaaaggg
gggaaggagagagggggtcggtaaagtgatagggaaaggtaggaaggttg
tttcgttttcatcgaagggcacgttcgacatgcttatcacatgtgagaca
ctctctccgtattcttctgtcaatgctgacataaaatatcacttaccata
ctctcttctattcccctattaacactgcacacgcagTTCGACCTACGCGA
CCTTTCCTAAGGGTGGCGGCAGGGGCACCATTATTCTTGGAGAAGCAGTC
AAGTGCGTACGAGAAAGAGGGAAGGAGGGAAAAAGAGTAACGAAGGGGTG
TGTCTGTGAATTGGAGATGGGGTCAAGAGCGAGTAAGAACAAGAGAAGGA
GGAGTTAAGGTTAACAAAACATGTGCATGTGTGCATAGTAAATGGGAATA
AAAGTCATCAAAGAGAGAAAAGAAACAGCGAAGCGAGAGGAAAATCCCAA
CTCAGAGCACGGATGGACCACACGGGATTCATAGTAGTGTCTTGCATATG
TGCACAT
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protein sequence of NO03G03150.1

>NO03G03150.1-protein ID=NO03G03150.1-protein|Name=NO03G03150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MWSQNDHPSHREGGRQRERGADKFGGDKRLGGDRWHNSRSFLDQDGGMDI
TLGEGHQPAGEKLVHKDFYNNFGDDFDLRDLS*
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Synonyms
Publications