NO03G03090, NO03G03090 (gene) Nannochloropsis oceanica

Overview
NameNO03G03090
Unique NameNO03G03090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1143
Alignment locationchr3:924577..925719 -

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin unc44
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:924577..925719 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
[Close]
BLAST of NO03G03090 vs. NCBI_GenBank
Match: EWM29772.1 (ankyrin unc44 [Nannochloropsis gaditana])

HSP 1 Score: 134.0 bits (336), Expect = 4.400e-28
Identity = 135/153 (88.24%), Postives = 142/153 (92.81%), Query Frame = 0 
Query:   22 LIDGGEFDVNEAGAGERRPLHRAAGSNHVEICRYLIEKGANIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVNARDIDNKTAFDLAMQGKHAAVIKVLKEMGDPNAQGAACCVM 175
            +I+G EFDVNEAGAG+RRPLHRAAGSNH+E+CRYLIE+GA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    LVNARD DNKT FDLAMQGKHAAV+K LKEMGDPNAQGAACCVM
Sbjct:    1 MIEGKEFDVNEAGAGDRRPLHRAAGSNHIEVCRYLIERGAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKDALVNARDADNKTPFDLAMQGKHAAVVKALKEMGDPNAQGAACCVM 153
[Close]
BLAST of NO03G03090 vs. NCBI_GenBank
Match: CBN75604.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 102.8 bits (255), Expect = 1.100e-18
Identity = 124/177 (70.06%), Postives = 140/177 (79.10%), Query Frame = 0 
Query:    1 MPNDSALHKSCHNGELDAVQRLIDGGEFDVNEAGAGERRPLHRAAGSNHVEICRYLIEKGANIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLV----NARDIDNKTAFDLAMQGKHAAVIKVLKEMGDPNAQGAACCV 174
            MP D+ LHK+ HNG+L  V++L++ GE  VNE GA ERR LHRAAG NHVEI  YL+EKGA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   ++    N +D   KT FD+A  G+H A   +LKE+GDPNAQ AAC +
Sbjct:    1 MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAACTI 177
[Close]
BLAST of NO03G03090 vs. NCBI_GenBank
Match: CBJ48958.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 73.9 bits (180), Expect = 5.400e-10
Identity = 32/64 (50.00%), Postives = 48/64 (75.00%), Query Frame = 0 
Query:    1 MPNDSALHKSCHNGELDAVQRLIDGGEFDVNEAGAGERRPLHRAAGSNHVEICRYLIEKGANID 65
            MP D+ LHKS H G++ +V++L++ GE +VN+ GA +R  LHRAAG+NHV I  YL++ GA ++
Sbjct:    1 MPLDTELHKSAHKGDIQSVRQLVETGEVNVNQKGAQDRTALHRAAGANHVGIIIYLLQAGAPVN 64
[Close]
BLAST of NO03G03090 vs. NCBI_GenBank
Match: XP_008614247.1 (hypothetical protein SDRG_10053 [Saprolegnia diclina VS20] >EQC32306.1 hypothetical protein SDRG_10053 [Saprolegnia diclina VS20])

HSP 1 Score: 66.2 bits (160), Expect = 1.100e-7
Identity = 112/173 (64.74%), Postives = 129/173 (74.57%), Query Frame = 0 
Query:    1 MPNDSALHKSCHNGELDAVQRLIDGGEFDVNEAGAGERRPLHRAAGSNHVEICRYLIEKGANIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVNARDIDNKTAFDLAMQGKHAAVIKVLKEMGDPNAQGAACCV 174
            MP+D+ LHK+ HNG+  AV ++++  + DVN  GA +RR LHRA                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL   +D D K AFDLAM GKH+AV K +KE+GDP AQ ++C +
Sbjct:    1 MPSDTPLHKAAHNGDKGAVLQILEDPDMDVNVPGAADRRALHRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL---KDKDGKMAFDLAMAGKHSAVCKAMKELGDPAAQSSSCAI 170
[Close]
BLAST of NO03G03090 vs. NCBI_GenBank
Match: XP_009827347.1 (hypothetical protein H257_04505 [Aphanomyces astaci] >ETV83917.1 hypothetical protein H257_04505 [Aphanomyces astaci])

HSP 1 Score: 65.5 bits (158), Expect = 1.900e-7
Identity = 112/173 (64.74%), Postives = 126/173 (72.83%), Query Frame = 0 
Query:    1 MPNDSALHKSCHNGELDAVQRLIDGGEFDVNEAGAGERRPLHRAAGSNHVEICRYLIEKGANIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVNARDIDNKTAFDLAMQGKHAAVIKVLKEMGDPNAQGAACCV 174
            MP+D+ LHK+ HNG+  AV ++++    DVN  GA +RRPLHRA                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       D K AFDLAM GKH AV+K +KE+GDP AQ A+C +
Sbjct:    1 MPSDTPLHKAAHNGDKGAVLQILEDPSMDVNAPGAADRRPLHRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK---DGKLAFDLAMAGKHNAVVKAMKELGDPAAQSASCVI 170
[Close]
BLAST of NO03G03090 vs. NCBI_GenBank
Match: XP_012210286.1 (hypothetical protein SPRG_15748 [Saprolegnia parasitica CBS 223.65] >KDO18999.1 hypothetical protein SPRG_15748 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 63.5 bits (153), Expect = 7.300e-7
Identity = 111/173 (64.16%), Postives = 127/173 (73.41%), Query Frame = 0 
Query:    1 MPNDSALHKSCHNGELDAVQRLIDGGEFDVNEAGAGERRPLHRAAGSNHVEICRYLIEKGANIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVNARDIDNKTAFDLAMQGKHAAVIKVLKEMGDPNAQGAACCV 174
            MP+D+ LHK+ HNG+  AV ++++  + DVN  GA +RR LHRA                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     D D K AFDLAM GKH+AV K +KE+GDP AQ ++C +
Sbjct:    1 MPSDTPLHKAAHNGDKGAVLQILEDPDMDVNVPGAADRRALHRA---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKDGKMAFDLAMAGKHSAVCKAMKELGDPAAQSSSCAI 170
[Close]
BLAST of NO03G03090 vs. NCBI_GenBank
Match: OQR85590.1 (hypothetical protein ACHHYP_11661 [Achlya hypogyna])

HSP 1 Score: 63.5 bits (153), Expect = 7.300e-7
Identity = 111/173 (64.16%), Postives = 127/173 (73.41%), Query Frame = 0 
Query:    1 MPNDSALHKSCHNGELDAVQRLIDGGEFDVNEAGAGERRPLHRAAGSNHVEICRYLIEKGANIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVNARDIDNKTAFDLAMQGKHAAVIKVLKEMGDPNAQGAACCV 174
            MP+D+ LHK+ HNG+  AV ++++  + DVN  GA +RR LHRA                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     D D K AFDLAM GKH+AV K +KE+GDP AQ ++C +
Sbjct:    1 MPSDTPLHKAAHNGDKGAVLQILEDPDMDVNVPGAADRRALHRA---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKDGKMAFDLAMAGKHSAVCKAMKELGDPAAQSSSCAI 170
The following BLAST results are available for this feature:
BLAST of NO03G03090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM29772.14.400e-2888.24ankyrin unc44 [Nannochloropsis gaditana][more]
CBN75604.11.100e-1870.06conserved unknown protein [Ectocarpus siliculosus][more]
CBJ48958.15.400e-1050.00conserved unknown protein [Ectocarpus siliculosus][more]
XP_008614247.11.100e-764.74hypothetical protein SDRG_10053 [Saprolegnia dicli... [more]
XP_009827347.11.900e-764.74hypothetical protein H257_04505 [Aphanomyces astac... [more]
XP_012210286.17.300e-764.16hypothetical protein SPRG_15748 [Saprolegnia paras... [more]
OQR85590.17.300e-764.16hypothetical protein ACHHYP_11661 [Achlya hypogyna... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005585NSK005585Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03090.1NO03G03090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572432gene_1502Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100022g37gene887Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03090.1NO03G03090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03090 ID=NO03G03090|Name=NO03G03090|organism=Nannochloropsis oceanica|type=gene|length=1143bp
AAACGATAGGGGAGGCAACGAAGCCTCAAGCTCAGACGAGGACGATACGT
CAGGCCCATTTTTGTTTTTTTGGGTCGCGGCGCTCCGCCAAATCTCTTCT
TACCATCTGGGTGCAGCCACGCTACGGTGCGTCAAGAGAAAAGTACACAA
GCCAGAATTGACTGAGAGGGACGACTTATAATCATGCCAAACGACTCCGC
CCTGCACAAGTCGTGCCATAATGGAGAGCTTGACGCTGTGCAGCGGCTGA
TTGATGGCGGGGAATTCGACGTTAATGAAGgtgcgtggacagtggaatgg
gaccaaaaggacgaagctgtcacgggcagcccaagacagtatgtctgatg
tttcatttctcttcattatttcacaccctttgccaccacatacgcagCGG
GAGCGGGTGAAAGAAGACCACTGCATCGAGCAGCTGGCAGCAATCACGTG
GAAATATGCCGGTACTTAATTGAGAAGGGTGCCAATATTGACCAGgttcg
aagtaaatcgatggaggcttcgcttaaacgagtagacacacaaggatttg
caaactgcgtgggatgctatgacaacatcttgcatctctctgcctccttt
cttttcattcttttcctccttcccctctggcgcatcccctctcagacttc
tttcattcctccctcccatgctactgtcacaatagCCTGACAAGAGTGGG
CGAACTGCTTTGCACTGGGCCAGCATCAGCGGACACATGGAATCAGCAGA
ATTGCTGGTGGAGAATGGCGCCAATCTCATGGCCGAGACCTCCTCCAAAA
TGACACCCTTGCATGGTGCCGCCGAGGGCGGGCGTGCAGAGCTCATCAGG
ATGTTTCTGGAAAAGGGGGACAAGATGGTACTCGTGAATGCCCGCGATAT
CGATAACAAGACGGCATTTGACTTGGCGATGCAGGGCAAGCATGCGGCTG
TCATTAAGGTGTTAAAGGAGATGGGAGACCCGAACGCGCAGGGGGCGGCT
TGCTGCGTCATGTAAGTCCTTGACTAACCATACAATATATCACGCGCGAA
GGAAGATTAGGGCAAACAGGAAAAGGGAAAGAGGAGGAGGCAAGAAAAAA
AGAAATAAATAAGAATTTGTGAAGCACAATGAAGGGTTTTGAT
back to top

protein sequence of NO03G03090.1

>NO03G03090.1-protein ID=NO03G03090.1-protein|Name=NO03G03090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MPNDSALHKSCHNGELDAVQRLIDGGEFDVNEAGAGERRPLHRAAGSNHV
EICRYLIEKGANIDQPDKSGRTALHWASISGHMESAELLVENGANLMAET
SSKMTPLHGAAEGGRAELIRMFLEKGDKMVLVNARDIDNKTAFDLAMQGK
HAAVIKVLKEMGDPNAQGAACCVM*
back to top
Synonyms
Publications