NO03G02970, NO03G02970 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G02970 vs. NCBI_GenBank
Match: EWM29763.1 (exosome component 8 [Nannochloropsis gaditana]) HSP 1 Score: 309.7 bits (792), Expect = 9.600e-81 Identity = 169/282 (59.93%), Postives = 201/282 (71.28%), Query Frame = 0 Query: 4 SRHQVETDALSYAQFDSATYLANLVKAGVRQDGRSLTGLRPLSLLQGILQGTTAGSALVKIGGTKVVAGVTLLVGQPAEDTPSKGEIGVEVHLPPMCHPKYTSIQIQQEEGKALETFVQNVLLKCGVVRREDLRISEGRHVWKLNVDIQCLSHEGSLGDACILAAASALADVQLPATALDKDEEVVILSDTPPRPLEMTRFPVPLTIGLHSDKFLCDLSLTEEERMPTQMTLVLDAENGHLCSAQKAGGASMASEQLARAFALCSARQKQVTRARGQQKPRS 286 SR VE Y++FD ATYL++L A RQDGRS LRPL LLQGILQ +TAGS+L KIG TKV+AGV+L VGQP ED+P KGEIGVEV+L P+CHPK++SIQ QQEE KALE FVQ+VLL+C VVRREDL I EGRHVWKLNVD+QCLSH+GSL DAC+L+A ALADV LP T + DE+VVIL G H+D L DLSL EEE++PT++ + +D E G LC+ QK GG SMASE L A ALC ARQKQ R ++ +S Sbjct: 33 SRGAVEEMISFYSRFDPATYLSDLESACRRQDGRSHKQLRPLKLLQGILQKSTAGSSLAKIGETKVLAGVSLQVGQPGEDSPEKGEIGVEVNLLPLCHPKFSSIQAQQEESKALENFVQSVLLRCNVVRREDLCIVEGRHVWKLNVDLQCLSHDGSLADACVLSALLALADVTLPVTIVGTDEKVVILH------------------GFHADMLLGDLSLAEEEKIPTRLRIAVDCETGQLCTLQKLGGVSMASEHLDSAVALCGARQKQFLLERDLRQDKS 296
BLAST of NO03G02970 vs. NCBI_GenBank
Match: CBJ29102.1 (similar to exosome component 6 [Ectocarpus siliculosus]) HSP 1 Score: 176.4 bits (446), Expect = 1.300e-40 Identity = 105/264 (39.77%), Postives = 155/264 (58.71%), Query Frame = 0 Query: 14 SYAQFDSATYLANLVKAGVRQDGRSLTGLRPLSLLQGIL-QGTTAGSALVKIGGTKVVAGVTLLVGQPAEDTPSKGEIGVEVHLPPMCHPKYTSIQIQQEEGKALETFVQNVLLKCGVVRREDLRISEGRHVWKLNVDIQCLSHEGSLGDACILAAASALADVQLPATALDKDEEVVILSDTPPRPLEMTRFPVPLTIGLHSDKFLCDLSLTEEERMPTQMTLVLDAENGHLCSAQKAGGASMASEQLARAFALCSARQKQVTR 277 ++ + D + VK GVR DGR L +RP+S+ G+L + SALV +G TKV+AG++L VG P+E+TP G + VEV L P+ K++S + E+ L TFV+N +++ G + DL I +G WKL +DI CLS +G+L DA ++AA AL +QLP T D+E+ + DTP + L + PVPLT G+ + D SL EEE + T +T+V +E G +C K GG+ + +QL LC KQ+T+ Sbjct: 5 AFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGR-PSEQAHVLSTFVKNSIVESGALVLTDLAIDDGAFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTR-RIDDEIFVTEDTPTQ-LVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTVVSTSE-GKVCGVHKPGGSCASGKQLNECLQLCQQHAKQLTQ 264
BLAST of NO03G02970 vs. NCBI_GenBank
Match: XP_006628282.1 (PREDICTED: exosome complex component RRP43 [Lepisosteus oculatus]) HSP 1 Score: 139.8 bits (351), Expect = 1.300e-29 Identity = 83/248 (33.47%), Postives = 133/248 (53.63%), Query Frame = 0 Query: 29 KAGVRQDGRSLTGLRPLSLLQGILQGTTAGSALVKIGGTKVVAGVTLLVGQPAEDTPSKGEIGVEVHLPPMCHPKYTSIQIQQEEGKALETFVQNVLLKCGVVRREDLRISEGRHVWKLNVDIQCLSHEGSLGDACILAAASALADVQLPATALDKDEEVVILSDTPPRPLEMTRFPVPLTIGLHSDKFLCDLSLTEEERMPTQMTLVLDAENGHLCSAQKAGGASMASEQLARAFALCSARQKQVTR 277 K R DGR L R +L G + T GSALVKIG T ++ G+ + P D P+KG I V LPP+C ++ E+ +A F+ +V+ V+RRED+ I +G+ W L DI CL ++G++ DACI+A +AL +VQLP ++ + E+ ++ + L +T+ PV + + D + EEE + T M V+ EN LC+ K GG +++ E+L + R ++V++ Sbjct: 4 KENCRPDGRELGEFRTTTLNIGSV-STADGSALVKIGNTTIICGIKAELTAPPVDAPNKGYIVPNVDLPPLCSSRFRP-GPPGEQAQAASQFIADVIESSQVIRREDICIEKGKLCWVLYCDIMCLDYDGNILDACIIALIAALKNVQLPEVNINTETELAEVNMKQKKHLNITKHPVGSSFAVFDDTIIIVDPTAEEEELSTGMITVVTDENEKLCAVHKPGGTALSGEKLQDCISRAITRNREVSK 249
BLAST of NO03G02970 vs. NCBI_GenBank
Match: XP_016132908.1 (PREDICTED: exosome complex component RRP43-like [Sinocyclocheilus grahami]) HSP 1 Score: 139.8 bits (351), Expect = 1.300e-29 Identity = 82/269 (30.48%), Postives = 135/269 (50.19%), Query Frame = 0 Query: 12 ALSYAQFDSATYLANLVKAGVRQDGRSLTGLRPLSLLQGILQGTTAGSALVKIGGTKVVAGVTLLVGQPAEDTPSKGEIGVEVHLPPMCHPKYTSIQIQQEEGKALETFVQNVLLKCGVVRREDLRISEGRHVWKLNVDIQCLSHEGSLGDACILAAASALADVQLPATALDKDEEVVILSDTPPRPLEMTRFPVPLTIGLHSDKFLCDLSLTEEERMPTQMTLVLDAENGHLCSAQKAGGASMASEQLARAFALCSARQKQVTRARGQ 281 A + + Y + +K R DGR L RP +L + T GSALVKIG T V+ G+ + P D P+KG + V LPP+C K+ E+ +A F+ +V+ ++ E+L I + + W L DI CL ++G+L DACI+ +AL + QLP ++K+ ++ + +PL++ R PV + + D + EEE + T + V+ E LC+ K GG S++ E+L R K++++ G+ Sbjct: 2 AAGFKTAEPLEYHRSFLKENCRSDGRELGEFRPTTLNLSSI-STADGSALVKIGNTTVICGIKAELTMPPSDAPNKGYMVPNVDLPPLCSSKFRP-GPPGEQAQAASQFIADVIESSDLINMEELCIDKSKLCWVLYCDIMCLDYDGNLLDACIIVLLAALKNAQLPEVTINKETDLAEVDIQKKKPLKINRLPVGSSFAVFDDSIIIVDPTAEEESLSTALLTVVTDEEDRLCAVHKPGGTSLSGEKLQHCINRAITRNKEISKLVGK 268
BLAST of NO03G02970 vs. NCBI_GenBank
Match: NP_001187695.1 (exosome complex component RRP43 [Ictalurus punctatus] >ADO28997.1 exosome complex exonuclease rrp43 [Ictalurus punctatus]) HSP 1 Score: 139.4 bits (350), Expect = 1.700e-29 Identity = 79/265 (29.81%), Postives = 136/265 (51.32%), Query Frame = 0 Query: 12 ALSYAQFDSATYLANLVKAGVRQDGRSLTGLRPLSLLQGILQGTTAGSALVKIGGTKVVAGVTLLVGQPAEDTPSKGEIGVEVHLPPMCHPKYTSIQIQQEEGKALETFVQNVLLKCGVVRREDLRISEGRHVWKLNVDIQCLSHEGSLGDACILAAASALADVQLPATALDKDEEVVILSDTPPRPLEMTRFPVPLTIGLHSDKFLCDLSLTEEERMPTQMTLVLDAENGHLCSAQKAGGASMASEQLARAFALCSARQKQVTR 277 A + + Y + +K R DGR L RP +L G + T GSALVKIG V+ G+ + P D P KG I V LPP+C ++ E+ + F+ +++ ++++EDL I + + W L DI CL ++G+L DACI+ +AL + QLP ++K+ ++ + R L++ + PV + + D+ + TEEE + T + + EN LC+ K GG+S+++E+L + R +++ + Sbjct: 2 AAGFKTAEPLEYHRSFLKENCRPDGRELGEFRPTTLNTGSI-STADGSALVKIGNATVICGIKAELATPTADAPDKGYIVPNVDLPPLCSSRFRP-GPPGEQAQVASQFIADIIDDSNIIKKEDLCIGKSKLCWVLYCDIMCLDYDGNLPDACIITLLAALKNAQLPKVTINKETDLPEVDVQHKRHLQINKHPVASSFAVFDDEVIIVDPTTEEESLATALITAVTDENDQLCAFHKPGGSSLSAEKLQGCISRAVTRNREINK 264
BLAST of NO03G02970 vs. NCBI_GenBank
Match: XP_016394643.1 (PREDICTED: exosome complex component RRP43-like [Sinocyclocheilus rhinocerous]) HSP 1 Score: 139.4 bits (350), Expect = 1.700e-29 Identity = 82/269 (30.48%), Postives = 135/269 (50.19%), Query Frame = 0 Query: 12 ALSYAQFDSATYLANLVKAGVRQDGRSLTGLRPLSLLQGILQGTTAGSALVKIGGTKVVAGVTLLVGQPAEDTPSKGEIGVEVHLPPMCHPKYTSIQIQQEEGKALETFVQNVLLKCGVVRREDLRISEGRHVWKLNVDIQCLSHEGSLGDACILAAASALADVQLPATALDKDEEVVILSDTPPRPLEMTRFPVPLTIGLHSDKFLCDLSLTEEERMPTQMTLVLDAENGHLCSAQKAGGASMASEQLARAFALCSARQKQVTRARGQ 281 A + + Y + +K R DGR L RP +L + T GSALVKIG T V+ G+ + P D P+KG + V LPP+C K+ E+ +A F+ +V+ ++ E+L I + + W L DI CL ++G+L DACI+ +AL + QLP ++K+ ++ + +PL++ R PV + + D + EEE + T + V+ E LC+ K GG S++ E+L R K++++ G+ Sbjct: 2 AAGFKTAEPLEYHRSFLKENCRSDGRELGEFRPTTLNISSI-STADGSALVKIGNTTVICGIKAELTMPPSDAPNKGYMVPNVDLPPLCSSKFRP-GPPGEQAQAASQFIADVIESSDLINMEELCIEKSKLCWVLYCDIMCLDYDGNLLDACIIVLLAALKNAQLPEVTINKETDLAEVDIPKKKPLKINRLPVGSSFAVFDDSIIIVDPTAEEESLSTALLTVVTDEEDRLCAVHKPGGTSLSGEKLQHCINRAITRNKEISKLVGK 268
BLAST of NO03G02970 vs. NCBI_GenBank
Match: XP_018610946.1 (PREDICTED: exosome complex component RRP43 [Scleropages formosus]) HSP 1 Score: 139.0 bits (349), Expect = 2.200e-29 Identity = 82/265 (30.94%), Postives = 137/265 (51.70%), Query Frame = 0 Query: 12 ALSYAQFDSATYLANLVKAGVRQDGRSLTGLRPLSLLQGILQGTTAGSALVKIGGTKVVAGVTLLVGQPAEDTPSKGEIGVEVHLPPMCHPKYTSIQIQQEEGKALETFVQNVLLKCGVVRREDLRISEGRHVWKLNVDIQCLSHEGSLGDACILAAASALADVQLPATALDKDEEVVILSDTPPRPLEMTRFPVPLTIGLHSDKFLCDLSLTEEERMPTQMTLVLDAENGHLCSAQKAGGASMASEQLARAFALCSARQKQVTR 277 A + + Y + +K R DGR L R +L G + T GSALVKIG T V+ G+ + P D P+KG I V LPP+C ++ E+ +A F+ +++ +++REDL I G+ W L DI CL ++G+L DAC++A +AL + QLP ++K+ E+ ++ PL +T+ PV + + + + EEE + T V+ E+ LC+ K GG+ +++E+L + R ++V + Sbjct: 2 AAGFKTAEPLEYHRSFLKENCRPDGRELGEFRATTLNIGSI-STADGSALVKIGNTTVICGIKAELATPPTDAPNKGYIVPNVDLPPLCSSRFRP-GPPGEQAQAASQFIADLIDSANIIQREDLCIESGKLSWVLYCDIMCLDYDGNLLDACVIALLAALENAQLPEVTINKETELAEVNPQKLHPLNVTKHPVGSSFAVFDNTIVIVDPTAEEESLSTATITVVTDEDERLCALHKPGGSGLSAEKLQDCISRAVTRHREVRK 264
BLAST of NO03G02970 vs. NCBI_GenBank
Match: XP_012678463.1 (PREDICTED: exosome complex component RRP43 [Clupea harengus]) HSP 1 Score: 137.5 bits (345), Expect = 6.500e-29 Identity = 85/259 (32.82%), Postives = 135/259 (52.12%), Query Frame = 0 Query: 19 DSATYLANLVKAGVRQDGRSLTGLRPLSLLQGILQGTTAGSALVKIGGTKVVAGVTLLVGQPAEDTPSKGEIGVEVHLPPMCHPKYTSIQIQQEEGKALETFVQNVLLKCGVVRREDLRISEGRHVWKLNVDIQCLSHEGSLGDACILAAASALADVQLPATALDKDEEVVILSDTPPRPLEMTRFPVPLTIGLHSDKF-LCDLSLTEEERMPTQMTLVLDAENGHLCSAQKAGGASMASEQLARAFALCSARQKQVTR 277 D Y + +K R DGR L R +L G + T GSALVKIG T V+ G+ + P DTP KG I V +PP+C K S +E+ +A F+ +++ ++R+EDL I + + W L DI CL ++G+L D CI+A +AL + QLP ++K+ ++ + P+ + R PV + + + + D + EE MTLV+D E G LCS K GG +++ E+L R +++++ Sbjct: 9 DPLEYHKSFLKENCRPDGRELDEFRTTTLNIGPI-STAEGSALVKIGNTTVMCGIKAELAVPPSDTPDKGYIVPNVDMPPLCASKVRS-GPPEEQAQAASQFIADIIETSEIIRKEDLCIEKEKLCWVLYCDIMCLDYDGNLLDTCIVALLAALKNTQLPKVTINKETDLPEVDLLKKCPISVNRHPVGSSFAVFDNTITIVDPTADEESLATAVMTLVID-EEGRLCSLHKPGGTALSGEKLQDCMGRAVTRHREISK 264
BLAST of NO03G02970 vs. NCBI_GenBank
Match: XP_023321750.1 (exosome complex component RRP43-like [Eurytemora affinis]) HSP 1 Score: 137.1 bits (344), Expect = 8.500e-29 Identity = 84/269 (31.23%), Postives = 142/269 (52.79%), Query Frame = 0 Query: 12 ALSYAQFDSATYLANLVKAGVRQDGRSLTGLRPLSLLQGILQGTTAGSALVKIGGTKVVAGVTLLVGQPAEDTPSKGEIGVEVHLPPMCHPKYTSIQIQQEEGKALETFVQNVLLKCGVVRREDLRISEGRHVWKLNVDIQCLSHEGSLGDACILAAASALADVQLPATALDKDEEVVILSDTPPRPLEMTRFPVPLTIGLH---SDKFLCDLSLTEEERMPTQMTLVLDAENGHLCSAQKAGGASMASEQLARAFALCSARQKQVTRA 278 +L + YL + +G R DGR L RP+S+ G ++ + GS++V+ G T VV G+ L + +P + P++G I V LP MC+P + S E ++L FV+ V+ + +L W L +DI CL H+G++ DA + +AL +Q+P D + E V ++ PL++ R V + G++ S K + D + EEE +Q+TLV ++G +C++Q+ GG+ ++SE L A +L S K++ A Sbjct: 2 SLEFRSLQPTEYLRKHISSGFRPDGRKLNERRPISISSGNIK-SADGSSIVRQGNTTVVCGIKLELAKPTPENPNQGFIVPNVTLPAMCNPSFKS-GPPSAEAQSLSAFVKEVIDSSSCIDLTELCPVNHMFAWVLYIDIICLDHDGNIRDAAVAGLMAALRSLQIPELDFDSETEKVSVTSV-RNPLKLCRMAVSCSSGIYDMDSPKLISDTTWEEEENSDSQITLV-TLDSGEICTSQQTGGSPLSSEALQEAISLASTHSKEILNA 266
BLAST of NO03G02970 vs. NCBI_GenBank
Match: XP_015235821.1 (PREDICTED: exosome complex component RRP43 [Cyprinodon variegatus]) HSP 1 Score: 136.7 bits (343), Expect = 1.100e-28 Identity = 84/263 (31.94%), Postives = 132/263 (50.19%), Query Frame = 0 Query: 12 ALSYAQFDSATYLANLVKAGVRQDGRSLTGLRPLSLLQGILQGTTAGSALVKIGGTKVVAGVTLLVGQPAEDTPSKGEIGVEVHLPPMCHPKYTSIQIQQEEGKALETFVQNVLLKCGVVRREDLRISEGRHVWKLNVDIQCLSHEGSLGDACILAAASALADVQLPATALDKDEEVVILSDTPPRPLEMTRFPVPLTIGLHSDKFLCDLSLTEEERMPTQMTLVLDAENGHLCSAQKAGGASMASEQLARAFALCSARQKQV 275 A + + Y + +K R DGR L R +L G + T GSALVK+G T ++ G+ + P D P KG I V LPP+C ++ E+ +A F+ +V+ +++ EDL I G+ W L DI CL ++G++ DACI+A +AL + QLP A++K+ + + + L + R PV + + D L EEE + T V+ E G LCS K GG ++ E+L +ARQ+++ Sbjct: 2 AAGFKTAEPLEYHRSFLKENCRPDGRELFEFRTTTLNIGSI-STADGSALVKLGNTTIICGIKAELANPTTDAPDKGYIVPNVDLPPLCSSRFRP-GPPGEQAQAASQFIADVIESSDLIKTEDLCIERGKLCWVLYCDIMCLDYDGNILDACIIALLAALKNTQLPEVAVNKETCLPEVDFEKRQRLRIHRHPVGASFCVFDDSILIVDPTAEEESLSTAHLTVVTDEEGRLCSVHKPGGTPLSGEKLQECINRATARQREI 262 The following BLAST results are available for this feature:
BLAST of NO03G02970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G02970 ID=NO03G02970|Name=NO03G02970|organism=Nannochloropsis oceanica|type=gene|length=1266bpback to top protein sequence of NO03G02970.1 >NO03G02970.1-protein ID=NO03G02970.1-protein|Name=NO03G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bpback to top Synonyms
Publications
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