NO03G02940, NO03G02940 (gene) Nannochloropsis oceanica

Overview
NameNO03G02940
Unique NameNO03G02940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1384
Alignment locationchr3:884562..885945 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:884562..885945 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009548DUF1168
Homology
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BLAST of NO03G02940 vs. NCBI_GenBank
Match: CBN79258.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 69.3 bits (168), Expect = 2.100e-8
Identity = 43/88 (48.86%), Postives = 55/88 (62.50%), Query Frame = 0 
Query:   83 MGRYSSVQAYGDNNPKVASVAYEGG----GEEGTA-QRIKTEKLENVTGSTAGASSSSFHIYRAHRRTEMNRLEDLDRRETEKQEQEA 166
            MGRY++VQAY DNNPK+  V+Y+       +EG A  ++  EK + V GS AGA S  FH YRAHRR EM+R+  +D    E Q  EA
Sbjct:    1 MGRYTTVQAYSDNNPKLVHVSYDQAKGKDNDEGKAGGKLVVEKTDQVMGSCAGAGSGEFHTYRAHRRREMHRVAAMDE---EAQVAEA 85
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BLAST of NO03G02940 vs. NCBI_GenBank
Match: XP_002293216.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED89677.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 64.7 bits (156), Expect = 5.200e-7
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 0 
Query:   83 MGRYSSVQAYGDNNPKVASVAYE---GGGEEGTAQR--------IKTEKLENVTGSTAGASSSSFHIYRAHRRTEMNRLEDLDRRETEKQEQEAFE 168
            MGRY+SVQAY DNNP + +V+Y+   G     +A          ++ EK++N  GSTAGA S  FH+YR  R  EM R + ++  E E + ++ F+
Sbjct:    1 MGRYTSVQAYADNNPSMRAVSYDQATGAAASASASEAAPSNRGPVQPEKVDNPYGSTAGAGSGEFHVYRHARAREMARWKKINEDEAEMKAEDEFQ 96
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BLAST of NO03G02940 vs. NCBI_GenBank
Match: OQR95076.1 (hypothetical protein THRCLA_08028 [Thraustotheca clavata])

HSP 1 Score: 64.7 bits (156), Expect = 5.200e-7
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 0 
Query:   83 MGRYSSVQAYGDNNPKVASVAYE----------GGGEEGTAQRIKTEKLENVTGSTAGASSSSFHIYRAHRRTEMNRLEDLD 155
            MGRY++ Q+Y DN  KV +V Y+             + G  ++ K  K+ENV GSTAGA S  FH+YRA RR EM RL  ++
Sbjct:    1 MGRYTTEQSYADNEAKVGTVPYDVVKDKSEVAVKDADAGPKEKFKFNKVENVAGSTAGAGSGEFHMYRAARRREMERLGGME 82
The following BLAST results are available for this feature:
BLAST of NO03G02940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
CBN79258.12.100e-848.86conserved unknown protein [Ectocarpus siliculosus][more]
XP_002293216.15.200e-739.58predicted protein [Thalassiosira pseudonana CCMP13... [more]
OQR95076.15.200e-743.90hypothetical protein THRCLA_08028 [Thraustotheca c... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005602NSK005602Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02940.1NO03G02940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572362gene_1486Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100022g52gene901Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02940.1NO03G02940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02940 ID=NO03G02940|Name=NO03G02940|organism=Nannochloropsis oceanica|type=gene|length=1384bp
ATGTGGGGGACGGGCCAAAGCAAGGGAGTCAAGTGGCCGGTCTTCGCTAC
TTGGCCCTACACGCCGAGCCTTAAGGACCAACACGGACGCGGCGACTGTC
CTGTATTGTGTGTTGCGAGGAGGGTGGGCGTGGATTGgtgcgattgagtt
gcttgtgttgtccttgagacattatgcaagcttctcctttcctttagcga
ggactccttgaaggcgtgtcatcctgtcatcgtccgcccccaaaacccct
gtcggcacaacaatacgcatgcgcagcacagttgggggctgtctatcacg
gagtggctggtggtagacagagaggcagaggggtggccgatttcacagag
gcaaacacatactttagtagtactcatcccaactcatccccagCCTCTCC
CTAGCACGGCCTCTCGTTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGTTGTTGCCCCTCTCACAGCAGGAGCA
GTATGGGGCGCTACTCAAGCGTGCAGGCATATGGCGATAACAATCCCAAG
GTGGCCAGCGTGGCGTATGAGGGCGGTGGGGAGGAGGGTACGGCCCAGCG
CATCAAGgtaatatgcattgtgtctctccttccccctttgcccctccacg
ctccccaaacccacattatgactgatcacgagctccttgtgctagcttgt
aacgcttctgtatgagcagtgtgcttgtcctagcagcgctgctctgctta
agaataagtccaccatttcacctgtccgaccttccactcataaccctcat
tccactccttcacgcccttccctcaccttcaccccctctcgtcagACCGA
GAAGCTTGAAAATGTGACGGGCAGTACGGCAGGGGCGAGCAGCAGCAGCT
TTCATATCTATCGGGCCCATCGACGCACAGAAATGAACAGATTGGAGGAC
CTTGACAGGAGGGAGACCGAGAAGCAAGAGCAGGAAGCGTTTGAGCGGTC
GTTGGAGCAGAAGCGGGTTCAGAGCGAGGAGCGTACCCGGAGGCTAGCCG
AGAAGCGCCGTCGCAAGAAGCAGGCCATGAAGGAGAGGAAAAAGCAGTCG
CCACAGGGACAGGTCCACGAGCAAGACATGAGCAGCGACGAGGACGAGCG
CGATGAGGAGAAGTGGCGAGATGGCAGCGCAAGCAAGAAGAGGAAGGGAG
AGGCGGTTGACTGCCCCATGGTGATGCCCATCGTACAACTCAGGAACGAC
GGAAGTTTCTTGGAAACGATGCTGGCGCTGCAAAAAGAGAAGGCGGGGAA
AGTGAGAAAGGAGGGCAACGGAAGCACTGCACCGTGACTGAGTGAACTCA
GGGAAAAGTAACAAATATGTACAGAAGGATGAGA
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protein sequence of NO03G02940.1

>NO03G02940.1-protein ID=NO03G02940.1-protein|Name=NO03G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MWGTGQSKGVKWPVFATWPYTPSLKDQHGRGDCPVLCVARRVGVDCLSLA
RPLVSSSSSSSSSSSSSSSSSSSCCPSHSRSSMGRYSSVQAYGDNNPKVA
SVAYEGGGEEGTAQRIKTEKLENVTGSTAGASSSSFHIYRAHRRTEMNRL
EDLDRRETEKQEQEAFERSLEQKRVQSEERTRRLAEKRRRKKQAMKERKK
QSPQGQVHEQDMSSDEDERDEEKWRDGSASKKRKGEAVDCPMVMPIVQLR
NDGSFLETMLALQKEKAGKVRKEGNGSTAP*
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Synonyms
Publications