NO03G02890, NO03G02890 (gene) Nannochloropsis oceanica

Overview
NameNO03G02890
Unique NameNO03G02890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2322
Alignment locationchr3:872402..874723 -

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Properties
Property NameValue
DescriptionAnia-6a type cyclin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:872402..874723 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036915Cyclin-like_sf
Homology
[Close]
BLAST of NO03G02890 vs. NCBI_GenBank
Match: XP_023883313.1 (cyclin-L1-1-like [Quercus suber])

HSP 1 Score: 96.3 bits (238), Expect = 2.300e-16
Identity = 54/128 (42.19%), Postives = 72/128 (56.25%), Query Frame = 0 
Query:    1 MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNLGTTFATWKCNWLPVFDDSK 129
            + VFH +  RR +LP   LEV S +YHDL+  L    +++LKE+GF  C+V +H H F+  Y   L   PEL Q+AWN  NDSLR   CVR+++ + AC  +Y AAR            W  VFD  K
Sbjct:  102 LVVFHRMECRRENLPIEHLEVGSQKYHDLKTDLSRTERHILKEMGF-VCHV-EHPHKFISNYLATLETPPELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQVPLPE-NPPWWKVFDADK 226
[Close]
BLAST of NO03G02890 vs. NCBI_GenBank
Match: XP_009412076.1 (PREDICTED: cyclin-L1-1 isoform X2 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 95.9 bits (237), Expect = 3.000e-16
Identity = 54/128 (42.19%), Postives = 74/128 (57.81%), Query Frame = 0 
Query:    1 MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNLGTTFATWKCNWLPVFDDSK 129
            + VFH +  RR SLP  LL+V S +Y +L+  L+   +++LKE+GF  C+V +H H F+  Y   L   PEL Q+AWN  NDSLR   CVR+++ + AC  +Y AAR            WL VFD  K
Sbjct:  102 IIVFHRMECRRESLPVELLDVLSKKYTELKNDLVRTERHLLKEMGF-ICHV-EHPHKFISNYLATLEAPPELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQVPLPENPPWWL-VFDADK 226
[Close]
BLAST of NO03G02890 vs. NCBI_GenBank
Match: AIU51042.1 (arginine-rich cyclin 1, partial [Ginkgo biloba])

HSP 1 Score: 95.9 bits (237), Expect = 3.000e-16
Identity = 55/126 (43.65%), Postives = 72/126 (57.14%), Query Frame = 0 
Query:    3 VFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNLGTTFATWKCNWLPVFDDSK 129
            VFH I  RR +LP   LE  S +Y DL+  L    ++VLKE+GF  C+V +H H F+L Y  +LG  PE+ Q+AWN  NDSLR   CVR+++ + AC  +Y AAR            W  VFD  K
Sbjct:   10 VFHRIECRRENLPLDPLEPHSKKYADLKMDLNRMERHVLKEMGF-ICHV-EHPHKFILNYLALLGA-PEIRQEAWNLANDSLRRTLCVRFKSEVVACGVVYAAARRFNVPLPE-NPPWWKVFDAEK 131
[Close]
BLAST of NO03G02890 vs. NCBI_GenBank
Match: XP_018685991.1 (PREDICTED: cyclin-L1-1 isoform X1 [Musa acuminata subsp. malaccensis] >XP_018685992.1 PREDICTED: cyclin-L1-1 isoform X1 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 95.9 bits (237), Expect = 3.000e-16
Identity = 54/128 (42.19%), Postives = 74/128 (57.81%), Query Frame = 0 
Query:    1 MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNLGTTFATWKCNWLPVFDDSK 129
            + VFH +  RR SLP  LL+V S +Y +L+  L+   +++LKE+GF  C+V +H H F+  Y   L   PEL Q+AWN  NDSLR   CVR+++ + AC  +Y AAR            WL VFD  K
Sbjct:  102 IIVFHRMECRRESLPVELLDVLSKKYTELKNDLVRTERHLLKEMGF-ICHV-EHPHKFISNYLATLEAPPELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQVPLPENPPWWL-VFDADK 226
[Close]
BLAST of NO03G02890 vs. NCBI_GenBank
Match: XP_009539474.1 (hypothetical protein PHYSODRAFT_320213 [Phytophthora sojae] >EGZ05102.1 hypothetical protein PHYSODRAFT_320213 [Phytophthora sojae])

HSP 1 Score: 95.5 bits (236), Expect = 3.900e-16
Identity = 48/109 (44.04%), Postives = 70/109 (64.22%), Query Frame = 0 
Query:    3 VFHHIRRRRR----SLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAAR 108
            VF+ + RRR+    ++   L+++  + +   R  L+   + VL +LGF   NV  H H FVL Y K+L G P+LAQ+AW Y+NDSLR D CVRY A + ACAA+++A+R
Sbjct:  104 VFYAMLRRRKWRRTTVAQQLVDLEGATFAQWRMWLIMVERQVLIDLGFSVYNVAQHPHKFVLYYVKVLDGSPQLAQQAWGYINDSLRADLCVRYSAQVIACAAIFLASR 212
[Close]
BLAST of NO03G02890 vs. NCBI_GenBank
Match: XP_008812657.1 (PREDICTED: cyclin-L1-1 isoform X2 [Phoenix dactylifera])

HSP 1 Score: 95.1 bits (235), Expect = 5.100e-16
Identity = 53/125 (42.40%), Postives = 73/125 (58.40%), Query Frame = 0 
Query:    1 MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNLGTTFATWKCNWLPVFD 126
            + VFH +  RR +LP   L+V S +Y DL+  L+   +++LKE+GF  C+V +H H F+  Y   LG  PEL Q+AWN  NDSLR   CVR+++ + AC  +Y AAR            WL VFD
Sbjct:  102 LIVFHRMECRRENLPIEHLDVFSKKYSDLKNDLIRTERHLLKEMGF-ICHV-EHPHKFISNYLATLGTPPELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQVPLPENPPWWL-VFD 223
[Close]
BLAST of NO03G02890 vs. NCBI_GenBank
Match: XP_008812660.1 (PREDICTED: cyclin-L1-1 isoform X4 [Phoenix dactylifera])

HSP 1 Score: 95.1 bits (235), Expect = 5.100e-16
Identity = 53/125 (42.40%), Postives = 73/125 (58.40%), Query Frame = 0 
Query:    1 MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNLGTTFATWKCNWLPVFD 126
            + VFH +  RR +LP   L+V S +Y DL+  L+   +++LKE+GF  C+V +H H F+  Y   LG  PEL Q+AWN  NDSLR   CVR+++ + AC  +Y AAR            WL VFD
Sbjct:   86 LIVFHRMECRRENLPIEHLDVFSKKYSDLKNDLIRTERHLLKEMGF-ICHV-EHPHKFISNYLATLGTPPELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQVPLPENPPWWL-VFD 207
[Close]
BLAST of NO03G02890 vs. NCBI_GenBank
Match: XP_008643870.1 (uncharacterized LOC100382239 isoform X1 [Zea mays])

HSP 1 Score: 94.7 bits (234), Expect = 6.700e-16
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 0 
Query:    1 MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAAR 108
            +FVFH +  RR +LP   L+V S +Y +LR  L+   +++LKE+GF  C+V +H H F+  Y   L   PEL Q+AWN  NDSLR   CVR+++ + AC  +Y AAR
Sbjct:  102 IFVFHRMECRRENLPIEFLDVFSKKYSELRRDLIRTERHLLKEMGF-ICHV-EHPHKFISNYLATLEAPPELTQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAAR 206
[Close]
BLAST of NO03G02890 vs. NCBI_GenBank
Match: XP_004968779.1 (cyclin-L1-1 [Setaria italica] >KQL05236.1 hypothetical protein SETIT_001621mg [Setaria italica])

HSP 1 Score: 94.7 bits (234), Expect = 6.700e-16
Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 0 
Query:    1 MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAARNLGTTFATWKCNWLPVFD 126
            +FVFH +  RR +LP   L+V S +Y +LR  L+   +++LKE+GF  C+V +H H F+  Y   L   PEL Q+AWN  NDSLR   CVR+++ + AC  +Y AAR  G +       W  VFD
Sbjct:  102 IFVFHRMECRRENLPIEYLDVFSKKYSELRHDLIRTERHLLKEMGF-ICHV-EHPHKFISNYLVTLEA-PELTQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRRGISLPE-DPPWWTVFD 222
[Close]
BLAST of NO03G02890 vs. NCBI_GenBank
Match: NP_001149537.1 (uncharacterized protein LOC100283163 [Zea mays] >ACG35766.1 cyclin-L2 [Zea mays])

HSP 1 Score: 94.7 bits (234), Expect = 6.700e-16
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 0 
Query:    1 MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCNVMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACAALYMAAR 108
            +FVFH +  RR +LP   L+V S +Y +LR  L+   +++LKE+GF  C+V +H H F+  Y   L   PEL Q+AWN  NDSLR   CVR+++ + AC  +Y AAR
Sbjct:  102 IFVFHRMECRRENLPIEFLDVFSKKYSELRHDLIRTERHLLKEMGF-ICHV-EHPHKFISNYLATLEAPPELTQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAAR 206
The following BLAST results are available for this feature:
BLAST of NO03G02890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_023883313.12.300e-1642.19cyclin-L1-1-like [Quercus suber][more]
XP_009412076.13.000e-1642.19PREDICTED: cyclin-L1-1 isoform X2 [Musa acuminata ... [more]
AIU51042.13.000e-1643.65arginine-rich cyclin 1, partial [Ginkgo biloba][more]
XP_018685991.13.000e-1642.19PREDICTED: cyclin-L1-1 isoform X1 [Musa acuminata ... [more]
XP_009539474.13.900e-1644.04hypothetical protein PHYSODRAFT_320213 [Phytophtho... [more]
XP_008812657.15.100e-1642.40PREDICTED: cyclin-L1-1 isoform X2 [Phoenix dactyli... [more]
XP_008812660.15.100e-1642.40PREDICTED: cyclin-L1-1 isoform X4 [Phoenix dactyli... [more]
XP_008643870.16.700e-1644.86uncharacterized LOC100382239 isoform X1 [Zea mays][more]
XP_004968779.16.700e-1642.40cyclin-L1-1 [Setaria italica] >KQL05236.1 hypothet... [more]
NP_001149537.16.700e-1644.86uncharacterized protein LOC100283163 [Zea mays] >A... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02890.1NO03G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|8609gene_1482Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02890.1NO03G02890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02890 ID=NO03G02890|Name=NO03G02890|organism=Nannochloropsis oceanica|type=gene|length=2322bp
ATGTTCGTCTTCCATCACATACGTCGGCGGCGTCGATCCCTCCCTCCCTC
CTTGCTGGAAGTCACATCTTCTCGGTACCATGACTTGCGCGAAGCCCTCC
TGACATTCGGAAAGTACGTCCTGAAAGAACTCGGCTTCGGGTTTTGTAAT
GTGATGGACCACCAACACAACTTTGTCCTCTGTTACAACAAAATCTTGGG
GGGGTTCCCGGAGCTTGCTCAGAAGGCCTGGAATTATTTGAACGATAGTT
TGAGGCTTGACTGCTGCGTGCGGTACCGCGCGGCACTGAGTGCATGTGCT
GCTCTGTATATGGCGGCGAGGAATTTGGGGACAACGTTCGCCACGTGGAA
GTGCAACTGGCTTCCGGTCTTCGATGACTCGAAATTCAATTCTTGGAGAC
TCTCGCGGCCTGAGACTCGGCAAGAAAAGGCGTATATGCCGCTTCCTTTG
CGTGGCATTTGTTTTCGCCCACTGCTTCCCTCGAACCGACAAAAACGAGG
AGAAAATATGGAGGGCGGCTGCAGTCGTAAAGGCACGATGGGCCATTGGG
CACGTAATATGGGCCACAGGGCACgtaccttgtattgaaagaatgccaaa
attaaagtactggcaatcatcaactactaggatatcatttgtgcgtgaca
gcgacgatgtaggtggacgccatattatatcttgcctttcaggccgcaca
ttttcacgaacccgaggggaaaatgggaaagctagactaattgttttgaa
tctttcggggattctagcgtgcgcgtgcgtgcggttctttttccatgggt
tgtatttgcgccctcgacaaagcaggcgctacccgctggaaagtcccgtt
gtcttaaaggtcaacaaataatgtataaggacttggatgtaagtcaagca
gaaacaaagcatggtgtggaatctggccagcacatcacgttagatactgt
gagcacatcccgccccaaatccgaacaattcgctgagttcccctcacgga
aagtgaagacgttgacttcttctccctacttaaaaaaaatatattgatga
gctttttggacagtccgggacgaggcatgcgtacaagggtgttggctaca
tgctactccagGTTATTTGTTGTATATTGAGCAACAGCTGCCACTATCAG
CACAGTGGTTTACAAGgtgcagtagaataccttccctcctcccaagagcc
gagacgagcgtgcatggcaccgcctccgctgcaaagcatttggctcgctg
ctttttttactgccgccgccaccatatccaccaccgacaccaacccaccg
ccacatcccccacacccacactcccacagGTGGCCCCCTACGCCAGCCTG
GAAGCGAACAATAACACAGTGGCAACACCAGAGTGACAGTGGGCGCCGAG
ACAAGCgtgcgtggcgccgcctcccttgcacagcatttccttcctgcgcc
acaccggcctcctaccatcgtttccctgtccagctccgcgcgacaaccta
cttttccccttgtgccgcggaccacactgtgcgcttcataagaacagtca
ttggaccagagggggcaccttgcttgccctttacacatctgttcaccacc
aggatgaatcatgggcgcccacttttcgtagccccatcctacccactttt
atcttagcacgccttcctaggggcgacgaacttctatgcggacatcgtct
ttgtttgtatgccttggtctgtggagtcgtgatcctttgagtaggactat
caaccctcataaccagattttcgcggttctatgtgtccctccctttattt
tccgtccaaaaacacagaattgccctctgttaaagtcaagCGACCGGATT
GAGGGAGGGGTTATGCGGGAGCAAGAGCAGCAGCAGCAGCAGCAGCAGAA
GCAGTAGGGTGGGGGAGGAGAAGGAGGGGGAGAAGGGGAAGAAAGAAAAT
GGACCACGGCAGCAGAAGCAGCAAAGGCAGCACCAGCACGAGCACGAGCA
GAAGCAGCAGGAGAAGGAAGGAGAGGAGGGGAAGGAGAGGAGGGGGAGAA
AGAAGAAATGCTGGAGGGGTTCGAAGAGGAGTGCGAGCAGTACTAGCACG
AGCAGCAGCAGGATGGGGAGGGGGAGGGAGAGGAGCAGGAGCTGGAGGGG
AAGTGTGGGAGCAGGAGCAGGAGTGGGAGGGAGGGAAGAGCGGATGAGAG
GTAGAGGATGGGTGGGAGGGGAAGCAGCAGTAGCAGGAGGAGAAGGAGAA
AGAGAAGGAGGAGGAAAGAGGAGTGGGAATGGGATTTCACATGCCATCCA
TCCGAGAAATCTGTCGGTGTGA
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protein sequence of NO03G02890.1

>NO03G02890.1-protein ID=NO03G02890.1-protein|Name=NO03G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MFVFHHIRRRRRSLPPSLLEVTSSRYHDLREALLTFGKYVLKELGFGFCN
VMDHQHNFVLCYNKILGGFPELAQKAWNYLNDSLRLDCCVRYRAALSACA
ALYMAARNLGTTFATWKCNWLPVFDDSKFNSWRLSRPETRQEKAYMPLPL
RGICFRPLLPSNRQKRGENMEGGCSRKGTMGHWARNMGHRARYLLYIEQQ
LPLSAQWFTRWPPTPAWKRTITQWQHQSDSGRRDKPTGLREGLCGSKSSS
SSSSRSSRVGEEKEGEKGKKENGPRQQKQQRQHQHEHEQKQQEKEGEEGK
ERRGRKKKCWRGSKRSASSTSTSSSRMGRGRERSRSWRGSVGAGAGVGGR
EERMRGRGWVGGEAAVAGGEGEREGGGKRSGNGISHAIHPRNLSV*
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Synonyms
Publications