NO03G02800, NO03G02800 (gene) Nannochloropsis oceanica

Overview
NameNO03G02800
Unique NameNO03G02800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1190
Alignment locationchr3:840179..841368 +

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Properties
Property NameValue
DescriptionNuclear cap-binding protein subunit 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:840179..841368 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005846nuclear cap binding complex
Vocabulary: Molecular Function
TermDefinition
GO:0000339RNA cap binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0045292mRNA cis splicing, via spliceosome
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR027157NCBP2
IPR000504RRM_dom
Homology
BLAST of NO03G02800 vs. NCBI_GenBank
Match: CRG90515.1 (Nuclear cap-binding protein subunit 2 [Talaromyces islandicus])

HSP 1 Score: 176.4 bits (446), Expect = 7.700e-41
Identity = 80/141 (56.74%), Postives = 104/141 (73.76%), Query Frame = 0
Query:   14 YWDRKQFTNFQDQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRAAMYQSMSD 155
            Y DR +   F+D  ++L+    +Y+GNLSF TTE QIH+ F+K G IKR++MGL+RF K PCGFCFVEY+ HQ ALD + ++ GT LDERI+R +LD G+   R+YGRG+SGGQVRDE R +YD GRGGYGR+   Q M +
Sbjct:   27 YNDRDEADKFEDPNDNLKDATTLYVGNLSFYTTEEQIHELFAKCGEIKRLVMGLDRFQKTPCGFCFVEYYTHQDALDCLKYIGGTKLDERIIRTDLDPGFQEGRQYGRGKSGGQVRDEYREEYDPGRGGYGRSLEEQRMRE 167          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: XP_020121117.1 (Nuclear cap-binding protein subunit 2 [Talaromyces atroroseus] >OKL60996.1 Nuclear cap-binding protein subunit 2 [Talaromyces atroroseus])

HSP 1 Score: 175.6 bits (444), Expect = 1.300e-40
Identity = 78/135 (57.78%), Postives = 102/135 (75.56%), Query Frame = 0
Query:   16 DRKQFTNFQDQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRAAMYQ 151
            DR++   ++D  ++LR    +Y+GNLSF TTE QIH+ F+K G IKR++MGL+RF K PCGFCFVEY+ HQ ALD + ++ GT LDERI+R +LD G+   R+YGRG+SGGQVRDE R +YD GRGGYGR+   Q
Sbjct:   29 DREEAEKYEDPADNLRNATTLYVGNLSFYTTEEQIHELFAKCGEIKRLVMGLDRFQKTPCGFCFVEYYTHQDALDCLKYIGGTKLDERIIRTDLDPGFQEGRQYGRGKSGGQVRDEYREEYDPGRGGYGRSVAEQ 163          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: XP_024702424.1 (small subunit of nuclear cap-binding protein complex [Aspergillus steynii IBT 23096] >PLB47122.1 small subunit of nuclear cap-binding protein complex [Aspergillus steynii IBT 23096])

HSP 1 Score: 175.6 bits (444), Expect = 1.300e-40
Identity = 82/149 (55.03%), Postives = 106/149 (71.14%), Query Frame = 0
Query:    5 LDTDPQPLVYWDRKQFTNFQDQIN-------SLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRA 147
            +D   +P  Y+  K+   +QD++         LRG   +Y+GNLSF TTE QIH+ FSK G +KR++MGL+RF K PCGFCFVEY+ HQ ALD + ++ GT LDERI+R +LD G+   R+YGRG+SGGQVRDE R +YD GRGGYGRA
Sbjct:    9 VDRLDRPSAYYVGKKKRRYQDEMEEQEDQNAKLRGATTLYVGNLSFYTTEEQIHELFSKCGEVKRLVMGLDRFNKTPCGFCFVEYYTHQDALDCLKYIGGTKLDERIIRTDLDPGFEEGRQYGRGKSGGQVRDEYREEYDPGRGGYGRA 157          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: OQD67325.1 (hypothetical protein PENDEC_c039G06918 [Penicillium decumbens])

HSP 1 Score: 173.3 bits (438), Expect = 6.600e-40
Identity = 78/123 (63.41%), Postives = 97/123 (78.86%), Query Frame = 0
Query:   24 QDQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRA 147
            +D I+ L+G   +Y+GNLSF TTE QIH+ FSK G IKR++MGL+RF K PCGFCFVEY+ HQ ALD + ++ GT LDERI+R +LD G+   R+YGRG+SGGQVRDE R +YD GRGGYGRA
Sbjct:   39 EDPIDKLQGATTLYVGNLSFYTTEEQIHELFSKCGEIKRLVMGLDRFNKTPCGFCFVEYYIHQDALDCLKYIGGTKLDERIIRADLDPGFEEGRQYGRGKSGGQVRDEYREEYDPGRGGYGRA 161          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: EPS40288.1 (hypothetical protein H072_5905 [Dactylellina haptotyla CBS 200.50])

HSP 1 Score: 172.6 bits (436), Expect = 1.100e-39
Identity = 85/152 (55.92%), Postives = 108/152 (71.05%), Query Frame = 0
Query:   10 QPLVYWDRKQFTN---FQDQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRAAMYQSMSDPLAE 159
            +P  Y+D+    N    Q + + L+    +Y+GNLSF TTE QIH+ FSK G IKR++MGL+RF K PCGFCFVEY+ H+ ALD + ++ GT LDERIVR +LD G+   R+YGRG+SGGQVRDE R DYD GRGGYGR+   QS S+  AE
Sbjct:   13 RPSTYYDKSNKRNREEVQHREDPLKDATTLYVGNLSFYTTEEQIHELFSKCGEIKRLVMGLDRFAKTPCGFCFVEYYTHEDALDCMKYVGGTKLDERIVRTDLDPGFKEGRQYGRGKSGGQVRDEYREDYDAGRGGYGRS--LQSASEMGAE 162          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: XP_016641353.1 (hypothetical protein SAPIO_CDS7720 [Scedosporium apiospermum] >KEZ41554.1 hypothetical protein SAPIO_CDS7720 [Scedosporium apiospermum])

HSP 1 Score: 172.2 bits (435), Expect = 1.500e-39
Identity = 79/131 (60.31%), Postives = 98/131 (74.81%), Query Frame = 0
Query:   24 QDQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRAAMYQSMSD 155
            Q   + L+    +Y+GNLSF TTE Q+++ FSKVG IKR++MGL+RFTK PCGFCFVEY+ HQ ALD + ++ GT LDERI+R +LD G+   R+YGRG+SGGQVRDE R DYDEGRGG GRA     M D
Sbjct:   46 QSPEDPLKDAATLYVGNLSFYTTEEQVYELFSKVGEIKRLVMGLDRFTKTPCGFCFVEYYTHQDALDCMKYIGGTKLDERIIRTDLDPGFEEGRQYGRGKSGGQVRDEYREDYDEGRGGLGRALQSDRMRD 176          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: XP_002378107.1 (small subunit of nuclear cap-binding protein complex [Aspergillus flavus NRRL3357] >EED52943.1 small subunit of nuclear cap-binding protein complex [Aspergillus flavus NRRL3357] >KOC16124.1 small subunit of nuclear cap-binding protein [Aspergillus flavus AF70] >OOO07218.1 RNP-1 like RNA-binding protein [Aspergillus oryzae])

HSP 1 Score: 171.8 bits (434), Expect = 1.900e-39
Identity = 76/123 (61.79%), Postives = 97/123 (78.86%), Query Frame = 0
Query:   24 QDQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRA 147
            +D  ++L+    +Y+GNLSF TTE QIH+ FSK G +KR++MGL+RFTK PCGFCFVEY+ HQ ALD + ++ GT LDERI+R +LD G+   R+YGRG+SGGQVRDE R +YD GRGGYGRA
Sbjct:   38 EDPTDNLKNATTLYVGNLSFYTTEEQIHELFSKCGEVKRLVMGLDRFTKTPCGFCFVEYYTHQDALDCLKYVGGTKLDERIIRTDLDPGFEEGRQYGRGKSGGQVRDEYREEYDPGRGGYGRA 160          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: XP_016612852.1 (hypothetical protein SPPG_00516 [Spizellomyces punctatus DAOM BR117] >KND04813.1 hypothetical protein SPPG_00516 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 171.8 bits (434), Expect = 1.900e-39
Identity = 81/144 (56.25%), Postives = 100/144 (69.44%), Query Frame = 0
Query:    1 MAELLDTDPQPLVYWDRKQFTNFQDQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYG 145
            M  L+ +  +P VY D K      D    +  +  +YIGNLSF TTE QI++ FSK G IKR+IMGL+RF K PCGFCFVEY+  Q A+D + F++GT LDERI+R +LD GY   R +GRG SGGQVRDE R DYDEGRGG+G
Sbjct:    1 MTSLVTSLGKPSVYKDNKYLGTDDDWEREIAASSTLYIGNLSFYTTEEQIYELFSKCGEIKRIIMGLDRFKKTPCGFCFVEYYNRQDAMDCMKFINGTKLDERIIRTDLDPGYKEGRNFGRGRSGGQVRDEHREDYDEGRGGWG 144          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: OQE20299.1 (hypothetical protein PENSTE_c013G01769 [Penicillium steckii])

HSP 1 Score: 171.8 bits (434), Expect = 1.900e-39
Identity = 76/122 (62.30%), Postives = 96/122 (78.69%), Query Frame = 0
Query:   25 DQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRA 147
            + +N L+G   +Y+GNLSF TTE QIH+ F+K G IKR++MGL+RF K PCGFCFVEY+ HQ ALD + ++ GT LDERI+R +LD G+   R+YGRG+SGGQVRDE R +YD GRGGYGRA
Sbjct:   37 EPVNKLQGATTLYVGNLSFYTTEEQIHELFAKCGEIKRLVMGLDRFNKTPCGFCFVEYYTHQDALDCLKYVGGTKLDERIIRADLDPGFEEGRQYGRGKSGGQVRDEYREEYDPGRGGYGRA 158          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: PIG80837.1 (nuclear cap-binding protein subunit 2 [Aspergillus arachidicola])

HSP 1 Score: 171.8 bits (434), Expect = 1.900e-39
Identity = 76/123 (61.79%), Postives = 97/123 (78.86%), Query Frame = 0
Query:   24 QDQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRA 147
            +D  ++L+    +Y+GNLSF TTE QIH+ FSK G +KR++MGL+RFTK PCGFCFVEY+ HQ ALD + ++ GT LDERI+R +LD G+   R+YGRG+SGGQVRDE R +YD GRGGYGRA
Sbjct:   38 EDPTDNLKNATTLYVGNLSFYTTEEQIHELFSKCGEVKRLVMGLDRFTKTPCGFCFVEYYTHQDALDCLKYVGGTKLDERIIRTDLDPGFEEGRQYGRGKSGGQVRDEYREEYDPGRGGYGRA 160          
The following BLAST results are available for this feature:
BLAST of NO03G02800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CRG90515.17.700e-4156.74Nuclear cap-binding protein subunit 2 [Talaromyces... [more]
XP_020121117.11.300e-4057.78Nuclear cap-binding protein subunit 2 [Talaromyces... [more]
XP_024702424.11.300e-4055.03small subunit of nuclear cap-binding protein compl... [more]
OQD67325.16.600e-4063.41hypothetical protein PENDEC_c039G06918 [Penicilliu... [more]
EPS40288.11.100e-3955.92hypothetical protein H072_5905 [Dactylellina hapto... [more]
XP_016641353.11.500e-3960.31hypothetical protein SAPIO_CDS7720 [Scedosporium a... [more]
XP_002378107.11.900e-3961.79small subunit of nuclear cap-binding protein compl... [more]
XP_016612852.11.900e-3956.25hypothetical protein SPPG_00516 [Spizellomyces pun... [more]
OQE20299.11.900e-3962.30hypothetical protein PENSTE_c013G01769 [Penicilliu... [more]
PIG80837.11.900e-3961.79nuclear cap-binding protein subunit 2 [Aspergillus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005614NSK005614Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02800.1NO03G02800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G02800.2NO03G02800.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572255gene_1472Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100022g67gene914Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02800.1NO03G02800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G02800.2NO03G02800.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02800 ID=NO03G02800|Name=NO03G02800|organism=Nannochloropsis oceanica|type=gene|length=1190bp
ACAGCAAGCAAGTAAGCATGGCGGAACTTTTGGACACGGACCCGCAGCCG
TTGGTGTACTGGGATCGCAAGCAGTTCACGAACTTCCAGGACCAGgtaag
cttttgcggggagccattggacgtaagtgcgcggtgcctttcgacaacct
cctttgccctgaccagtcagaccaaagcattcccagcttggaagagtatt
attttcctctgcagtcgacaagcgccgtaacggagcccgtcggtcatgct
tgaggaggcagacagacggacacgacctagaaactttccgtcaaggccgc
cgcggatgctcacacaccaataacatgcacatgtgcacagATCAATTCAT
TACGGGGTACCAAGGTAGTATACATTGGAAATCTCAGCTTTCAAACTACT
GAGCCCCAGATCCATCAGGCTTTCTCCAAGgtacgaactgcgttttgtta
gctgaaactatcactctcactactcttacgccgttatcccaaacccctat
tggggtcaaatagGTTGGTTCCATCAAGCGCGTCATCATGGGCCTCAACC
GATTTACCAAGGAGCCCTGCGGCTTTTGCTTTGTCGAgtgcgttatgggt
ttgaggaaggatgagttggagatggccgggagtaaggtgtctgctgcaat
tccaatatccagcactctcactcccgcataatgtatttagctctgacctt
taccccatgtctatttaaacatttcatacctacacttggtcatgtttttg
cgcagGTACTTTGAACATCAGTGCGCGCTGGACGCCGTTGCCTTTTTGCA
CGGTACCACCTTAGACGAGCGCATCGTTCGCGTGGAGCTGGACTGGGGCT
ACCACCCGTCCAGACGGTACGGTCGCGGGGAAAGCGGTGGTCAGGTGCGC
GATGAAAAGCGCTTGGACTACGACGAAGGCCGTGGTGGCTATGGGCGGGC
GGCCATGTATCAATCGATGTCTGATCCCCTTGCCGAGGCACCCATTCCTC
CATCCATAGgtaaggttggagcacagaaagcggtgggatgacagctatca
caacacaccattcaaatgttctgtattacatacatacagTTTCTGGGAGA
CGGCCGCAGCGGCCTGGAGTGCCATAATATTTTGCATTGGGTGCGTCGGC
TGTGTGCGGGGGTGGTGTACAAATCGAGAAAGGAAATTCA
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protein sequence of NO03G02800.1

>NO03G02800.1-protein ID=NO03G02800.1-protein|Name=NO03G02800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MAELLDTDPQPLVYWDRKQFTNFQDQINSLRGTKVVYIGNLSFQTTEPQI
HQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTL
DERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRAAMYQ
SMSDPLAEAPIPPSIVSGRRPQRPGVP*
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protein sequence of NO03G02800.2

>NO03G02800.2-protein ID=NO03G02800.2-protein|Name=NO03G02800.2|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MAELLDTDPQPLVYWDRKQFTNFQDQINSLRGTKVVYIGNLSFQTTEPQI
HQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTL
DERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRAAMYQ
SMSDPLAEAPIPPSIGKVGAQKAVG*
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Synonyms
Publications