NO03G02600, NO03G02600 (gene) Nannochloropsis oceanica

Overview
NameNO03G02600
Unique NameNO03G02600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1416
Alignment locationchr3:744894..746309 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:744894..746309 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO03G02600 vs. NCBI_GenBank
Match: EWM29701.1 (hypothetical protein Naga_100114g20 [Nannochloropsis gaditana])

HSP 1 Score: 511.5 bits (1316), Expect = 2.700e-141
Identity = 289/445 (64.94%), Postives = 336/445 (75.51%), Query Frame = 0
Query:   28 LLMLLQQDTLAFLHPKAFAFSSTAAAGPTQRVRQPIVEMMAGDGASSTVSAGTVAVVVGYQSGAAQLLAAKMATMHKDAIVRAILDKGDDSDSEAASFPVNVQVTYKNLESVMAEDLAGASVALISLDKGPGAEVGADPGNYLSLPTLLAAIPESAKVLVAAYANDTSGTGQSGGGGLQLNIFAKGVNPKEAVEAIRRESGGSR-IVLVQHARLFGAANPFTVGGKATQPLPFVSGPLQRPVVEESYAKQNILLALGSSLSRNANAATLRSTLAEAMVRAVEVVGSIADFSVVSLEGQAPCVGDWEQQLAGLDTRGGVTVFEKVLAANERVDLPVLQDWLKDDFGAGLSTLAISRVLNSPKPAIVAMTDSGADIIWQFVQKDLKIRGSGRWCIQLDNVSKSIKILREDATGGMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 472
            +L LLQQ    FL P       + A     R  + +V MM+ +G       G VAVVVGY+ G AQL+AAKMAT  +   VRAIL+ G      A   P NVQVT K+L+S+ ++DLAGASVAL+SLDKGP  E GADP NYL LPT+L+ I    KV++AAYANDT+  G+  GGGL LNIFA+GV+PKE VEA R    GS  IVL QH RLFG     T    A Q LPFV GPLQ+PV+EES+AKQNILLALGSSLSRN +AAT+RS LAE+M+RA  ++ SI DFSVVSLEGQAP  GDWEQ +AGLDTRGGVTVFEKVLAA+ERVDL VLQ+WL +DFGAGLSTLAISRVLNSPKP+IV  T  G+DI+WQFV KDLK++GSGRW IQLD+ +++IKILRE+A G MLTEALPGEEELLQRFSAAINRLVYSRKLSKRR
Sbjct:   91 VLTLLQQGAWGFLAPPRTTLKDSCAI----RAGKSLV-MMSAEG------MGKVAVVVGYEDGTAQLIAAKMATTLEGVRVRAILETGTSDPVPAMLLPPNVQVTRKSLDSIGSDDLAGASVALVSLDKGPKEEAGADPSNYLPLPTILSNIGPLTKVVIAAYANDTAAAGRV-GGGLNLNIFARGVDPKEVVEAARSSGPGSAVIVLAQHGRLFGPPALATSPNAAVQVLPFVGGPLQKPVLEESFAKQNILLALGSSLSRNRDAATMRSALAESMIRASGLIDSIGDFSVVSLEGQAPSAGDWEQLMAGLDTRGGVTVFEKVLAASERVDLNVLQEWLVNDFGAGLSTLAISRVLNSPKPSIVINTAVGSDIVWQFVGKDLKVQGSGRWSIQLDSEARTIKILRENAEGKMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 523          
BLAST of NO03G02600 vs. NCBI_GenBank
Match: CBJ26332.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 91.3 bits (225), Expect = 8.800e-15
Identity = 62/186 (33.33%), Postives = 96/186 (51.61%), Query Frame = 0
Query:  291 NAATLRSTLAEAMVRAVEVVGSI----ADFSVVSLEGQAPCVGDWEQQLAGLDTRGGVTVFEKVLAANERVDLPVLQDWLKDDFG-AGLSTLAISRVLNSPKPAIVAMTDSGADIIWQFVQKDLKIRGSGRWCIQLDNVSKSIKILREDATGGMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 472
            +AAT R+++AEA+ R +   GS      + SVVS++G A    +WE++L  LD   GV VF     A  R D   L  WL D +G A L       + +  +P  VA T+SG +++W+ +  DLK   +G+  + +      I+I+R    G    +AL GEEE++Q     IN + Y +   KR+
Sbjct:   53 DAATKRASVAEAIERLIN--GSERKRGLELSVVSVDGFATTDEEWEEELKRLDDSDGVAVFSIEFDAISRKD--QLMRWLADSWGPAALRKSTAGMLRSGARPVAVAPTESGLELVWETLTDDLKAVQAGKLSLVVTEEPAGIRIVRVAGPGQPQGKALSGEEEIVQSLLEGINTVAYPKSFVKRK 234          
BLAST of NO03G02600 vs. NCBI_GenBank
Match: CEM33438.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 80.5 bits (197), Expect = 1.600e-11
Identity = 75/317 (23.66%), Postives = 137/317 (43.22%), Query Frame = 0
Query:  171 SLPTLLAAIPESAKVLVAAYANDTSGTGQSGGGGLQLNIFAKGVNPKEAVEAIRRESGGS-RIVLVQHARLFGAANPFTVGGKATQPLPFVSGPLQRPVVEESYAKQNILLALGSSLSR-NANAATLRSTLAEAMVRAVEVVGSI---------ADFSVVSLEGQAPCVG-DWEQQLAGLDTRGGVTVFEKVLAANERVDLPVLQDWLKDDFG-AGLSTLAISRVLNSPKPAIVAMTDSGADIIWQFVQKDLKIRGSGRWCIQLDNV---SKSIKILREDATGGMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 472
            SL +++A +P+S               G++G  G  L +  +  +P + V +    S  S R V+V++ RL G            +P PF+SGPL+ P ++E Y KQ + ++   SL +      T R  +A+A V+ +E + S+          D +V SLE   P     W++QL+ LD +    V    LA  ER +      W+++++G   +     SR     +P  +        ++W+++ +       G     L+     S ++++ R D     L + L GE E++  F   + +  + R    R+
Sbjct:  148 SLKSVVATVPQS---------------GETGYKGGLLKMLKRKQDPLDQVISKYVSSKPSIRPVIVRYGRLIGGLG---------EPTPFLSGPLRAPQLDEFYVKQGVRMSRTVSLGKVTGETVTRRDQVAKAAVQCLENLDSVEYGGDGEAALDVTVFSLEDPTPPSDYVWQEQLSRLDDKYACDVLVMDLAKAERPE--AFLAWVREEWGREAIGAATASRRSVGARPTAIERKADSVAMVWEYLDESFNAFTEGYLKFALEGAGTGSPTLRVSRYDGDDRPLLKPLFGESEIINLFLEGLTKTAFPRNFIARK 438          
The following BLAST results are available for this feature:
BLAST of NO03G02600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM29701.12.700e-14164.94hypothetical protein Naga_100114g20 [Nannochlorops... [more]
CBJ26332.18.800e-1533.33conserved unknown protein [Ectocarpus siliculosus][more]
CEM33438.11.600e-1123.66unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005640NSK005640Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02600.1NO03G02600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572113gene_1448Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100114g20gene935Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02600.1NO03G02600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02600 ID=NO03G02600|Name=NO03G02600|organism=Nannochloropsis oceanica|type=gene|length=1416bp
ATGGCTTCCTCCACAAGGCTGAGCGCTTTTAGAGCCCTTTTTGCTTCCAG
ATCCCTTCCTAGCCTCCTTCCCCTCGCCCTCCTCCTGATGCTGCTGCAGC
AAGACACCCTGGCCTTTCTTCATCCCAAAGCATTCGCTTTCTCGTCCACA
GCAGCAGCGGGGCCCACCCAGCGAGTAAGACAGCCTATCGTGGAGATGAT
GGCAGGAGACGGTGCAAGCAGCACCGTGAGTGCGGGCACTGTCGCCGTGG
TGGTGGGGTACCAAAGCGGGGCGGCCCAGCTACTGGCGGCTAAGATGGCC
ACAATGCATAAGGATGCCATCGTGCGTGCAATTTTAGACAAAGGAGATGA
TAGCGATAGCGAAGCTGCCTCTTTCCCCGTCAACGTGCAAGTGACCTACA
AAAATCTGGAAAGTGTGATGGCAGAAGATCTGGCAGGCGCCTCAGTGGCT
CTTATTAGTTTGGACAAGGGGCCGGGAGCAGAGGTAGGGGCGGATCCAGG
CAATTACTTGTCGCTGCCGACCTTGCTCGCAGCCATTCCAGAATCGGCCA
AGGTGCTGGTAGCAGCGTATGCGAATGACACGTCAGGGACGGGGCAAAGC
GGTGGGGGTGGGTTGCAACTCAATATTTTTGCAAAGGGCGTGAACCCGAA
GGAGGCCGTGGAGGCCATTCGTCGAGAAAGTGGGGGCTCGCGGATCGTGC
TTGTACAGCATGCGCGTTTGTTTGGCGCGGCTAATCCTTTTACTGTTGGG
GGAAAGGCTACTCAGCCATTGCCTTTCGTGAGTGGGCCTTTGCAGAGGCC
TGTGGTGGAGGAGTCTTACGCGAAGCAAAATATTTTATTGGCCTTGGGGA
GCTCCTTATCCAGAAACGCGAATGCGGCTACGTTGAGGTCAACGTTGGCT
GAGGCGATGGTAAGGGCGGTAGAGGTGGTGGGGAGCATTGCGGATTTCAG
CGTGGTGAGTTTGGAAGGACAGGCGCCTTGTGTGGGGGATTGGGAGCAGC
AGTTGGCAGGGCTCGACACGAGGGGAGGGGTGACCGTTTTCGAGAAGGTA
CTGGCGGCGAATGAACGGGTGGATCTTCCGGTGTTGCAGGACTGGTTGAA
GGATGACTTTGGGGCGGGGCTCTCGACGCTTGCTATTTCCCGGGTGTTGA
ACTCGCCCAAGCCAGCGATCGTTGCGATGACCGACTCTGGGGCTGATATC
ATATGGCAGTTTGTCCAGAAGGATTTGAAAATCAGGGGATCCGGGAGGTG
GTGCATTCAGTTGGATAACGTGTCGAAGTCAATAAAAATATTGAGAGAAG
ACGCGACAGGGGGCATGTTGACGGAGGCGCTGCCGGGTGAGGAGGAGTTG
CTGCAGCGGTTCTCAGCAGCGATTAATAGGTTGGTGTACTCGAGGAAGCT
AAGTAAACGACGGTAA
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protein sequence of NO03G02600.1

>NO03G02600.1-protein ID=NO03G02600.1-protein|Name=NO03G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MASSTRLSAFRALFASRSLPSLLPLALLLMLLQQDTLAFLHPKAFAFSST
AAAGPTQRVRQPIVEMMAGDGASSTVSAGTVAVVVGYQSGAAQLLAAKMA
TMHKDAIVRAILDKGDDSDSEAASFPVNVQVTYKNLESVMAEDLAGASVA
LISLDKGPGAEVGADPGNYLSLPTLLAAIPESAKVLVAAYANDTSGTGQS
GGGGLQLNIFAKGVNPKEAVEAIRRESGGSRIVLVQHARLFGAANPFTVG
GKATQPLPFVSGPLQRPVVEESYAKQNILLALGSSLSRNANAATLRSTLA
EAMVRAVEVVGSIADFSVVSLEGQAPCVGDWEQQLAGLDTRGGVTVFEKV
LAANERVDLPVLQDWLKDDFGAGLSTLAISRVLNSPKPAIVAMTDSGADI
IWQFVQKDLKIRGSGRWCIQLDNVSKSIKILREDATGGMLTEALPGEEEL
LQRFSAAINRLVYSRKLSKRR*
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Synonyms
Publications