NO03G02600, NO03G02600 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO03G02600 vs. NCBI_GenBank
Match: EWM29701.1 (hypothetical protein Naga_100114g20 [Nannochloropsis gaditana]) HSP 1 Score: 511.5 bits (1316), Expect = 2.700e-141 Identity = 289/445 (64.94%), Postives = 336/445 (75.51%), Query Frame = 0 Query: 28 LLMLLQQDTLAFLHPKAFAFSSTAAAGPTQRVRQPIVEMMAGDGASSTVSAGTVAVVVGYQSGAAQLLAAKMATMHKDAIVRAILDKGDDSDSEAASFPVNVQVTYKNLESVMAEDLAGASVALISLDKGPGAEVGADPGNYLSLPTLLAAIPESAKVLVAAYANDTSGTGQSGGGGLQLNIFAKGVNPKEAVEAIRRESGGSR-IVLVQHARLFGAANPFTVGGKATQPLPFVSGPLQRPVVEESYAKQNILLALGSSLSRNANAATLRSTLAEAMVRAVEVVGSIADFSVVSLEGQAPCVGDWEQQLAGLDTRGGVTVFEKVLAANERVDLPVLQDWLKDDFGAGLSTLAISRVLNSPKPAIVAMTDSGADIIWQFVQKDLKIRGSGRWCIQLDNVSKSIKILREDATGGMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 472 +L LLQQ FL P + A R + +V MM+ +G G VAVVVGY+ G AQL+AAKMAT + VRAIL+ G A P NVQVT K+L+S+ ++DLAGASVAL+SLDKGP E GADP NYL LPT+L+ I KV++AAYANDT+ G+ GGGL LNIFA+GV+PKE VEA R GS IVL QH RLFG T A Q LPFV GPLQ+PV+EES+AKQNILLALGSSLSRN +AAT+RS LAE+M+RA ++ SI DFSVVSLEGQAP GDWEQ +AGLDTRGGVTVFEKVLAA+ERVDL VLQ+WL +DFGAGLSTLAISRVLNSPKP+IV T G+DI+WQFV KDLK++GSGRW IQLD+ +++IKILRE+A G MLTEALPGEEELLQRFSAAINRLVYSRKLSKRR Sbjct: 91 VLTLLQQGAWGFLAPPRTTLKDSCAI----RAGKSLV-MMSAEG------MGKVAVVVGYEDGTAQLIAAKMATTLEGVRVRAILETGTSDPVPAMLLPPNVQVTRKSLDSIGSDDLAGASVALVSLDKGPKEEAGADPSNYLPLPTILSNIGPLTKVVIAAYANDTAAAGRV-GGGLNLNIFARGVDPKEVVEAARSSGPGSAVIVLAQHGRLFGPPALATSPNAAVQVLPFVGGPLQKPVLEESFAKQNILLALGSSLSRNRDAATMRSALAESMIRASGLIDSIGDFSVVSLEGQAPSAGDWEQLMAGLDTRGGVTVFEKVLAASERVDLNVLQEWLVNDFGAGLSTLAISRVLNSPKPSIVINTAVGSDIVWQFVGKDLKVQGSGRWSIQLDSEARTIKILRENAEGKMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 523
BLAST of NO03G02600 vs. NCBI_GenBank
Match: CBJ26332.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 91.3 bits (225), Expect = 8.800e-15 Identity = 62/186 (33.33%), Postives = 96/186 (51.61%), Query Frame = 0 Query: 291 NAATLRSTLAEAMVRAVEVVGSI----ADFSVVSLEGQAPCVGDWEQQLAGLDTRGGVTVFEKVLAANERVDLPVLQDWLKDDFG-AGLSTLAISRVLNSPKPAIVAMTDSGADIIWQFVQKDLKIRGSGRWCIQLDNVSKSIKILREDATGGMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 472 +AAT R+++AEA+ R + GS + SVVS++G A +WE++L LD GV VF A R D L WL D +G A L + + +P VA T+SG +++W+ + DLK +G+ + + I+I+R G +AL GEEE++Q IN + Y + KR+ Sbjct: 53 DAATKRASVAEAIERLIN--GSERKRGLELSVVSVDGFATTDEEWEEELKRLDDSDGVAVFSIEFDAISRKD--QLMRWLADSWGPAALRKSTAGMLRSGARPVAVAPTESGLELVWETLTDDLKAVQAGKLSLVVTEEPAGIRIVRVAGPGQPQGKALSGEEEIVQSLLEGINTVAYPKSFVKRK 234
BLAST of NO03G02600 vs. NCBI_GenBank
Match: CEM33438.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 80.5 bits (197), Expect = 1.600e-11 Identity = 75/317 (23.66%), Postives = 137/317 (43.22%), Query Frame = 0 Query: 171 SLPTLLAAIPESAKVLVAAYANDTSGTGQSGGGGLQLNIFAKGVNPKEAVEAIRRESGGS-RIVLVQHARLFGAANPFTVGGKATQPLPFVSGPLQRPVVEESYAKQNILLALGSSLSR-NANAATLRSTLAEAMVRAVEVVGSI---------ADFSVVSLEGQAPCVG-DWEQQLAGLDTRGGVTVFEKVLAANERVDLPVLQDWLKDDFG-AGLSTLAISRVLNSPKPAIVAMTDSGADIIWQFVQKDLKIRGSGRWCIQLDNV---SKSIKILREDATGGMLTEALPGEEELLQRFSAAINRLVYSRKLSKRR 472 SL +++A +P+S G++G G L + + +P + V + S S R V+V++ RL G +P PF+SGPL+ P ++E Y KQ + ++ SL + T R +A+A V+ +E + S+ D +V SLE P W++QL+ LD + V LA ER + W+++++G + SR +P + ++W+++ + G L+ S ++++ R D L + L GE E++ F + + + R R+ Sbjct: 148 SLKSVVATVPQS---------------GETGYKGGLLKMLKRKQDPLDQVISKYVSSKPSIRPVIVRYGRLIGGLG---------EPTPFLSGPLRAPQLDEFYVKQGVRMSRTVSLGKVTGETVTRRDQVAKAAVQCLENLDSVEYGGDGEAALDVTVFSLEDPTPPSDYVWQEQLSRLDDKYACDVLVMDLAKAERPE--AFLAWVREEWGREAIGAATASRRSVGARPTAIERKADSVAMVWEYLDESFNAFTEGYLKFALEGAGTGSPTLRVSRYDGDDRPLLKPLFGESEIINLFLEGLTKTAFPRNFIARK 438 The following BLAST results are available for this feature:
BLAST of NO03G02600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G02600 ID=NO03G02600|Name=NO03G02600|organism=Nannochloropsis oceanica|type=gene|length=1416bpback to top protein sequence of NO03G02600.1 >NO03G02600.1-protein ID=NO03G02600.1-protein|Name=NO03G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bpback to top Synonyms
Publications
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