NO03G02400, NO03G02400 (gene) Nannochloropsis oceanica

Overview
NameNO03G02400
Unique NameNO03G02400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1422
Alignment locationchr3:690290..691711 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:690290..691711 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005643nuclear pore
Vocabulary: Biological Process
TermDefinition
GO:0046907intracellular transport
Vocabulary: INTERPRO
TermDefinition
IPR015007NUP2/50/61
IPR000156Ran_bind_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO03G02400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL067nonsL067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR049ngnoR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005684NSK005684Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02400.1NO03G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|6004gene_1426Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02400.1NO03G02400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02400 ID=NO03G02400|Name=NO03G02400|organism=Nannochloropsis oceanica|type=gene|length=1422bp
ATGGCAACGACCACCGGCATCAGCGACCCTGCAATTAGGCATGAAGATCC
CACGATGACTGCCGCCTCTGAGACGACGACGACAACGACGACGACGACAA
CGACGACGACCGCGACGGAAGGCAGCAGCCCTGCACCCGAGTCGGGCTCG
GCGACAAAAAAAAAGCGGGGGGCTGGGGACGACTGGGCCAAGAGCAAGAA
CGACGTTGACAACGATGATTCAAGTGAGATCGCAGAAGAAGGCACTGTCT
CGGGCGAGTTTCGACGTGCGGATCCCGAGACGCTGAGCAAGCGGAGGATA
GTCAAGGCCCGTCGGCCACCTGGCATGGAAGGAGGAGATGGGTCACCTGC
AGGATCGGCGACGGGTGTGGAGGATAAGTCTGTGACCGCCAATCCCTTTG
CAGCCCTTTCTTTAACGAGAGCCAAGACTGATGCTATCGGGGGAGGTGGC
GTGTTCGGGAGTGGGTTCCCCCAGACGAATGCTGCTTCCATCCTCGGGGT
AAGTGGCGGGGGTGGGGGTTGGGGTAGCACGGGAGCGAAGGGAGTTGACA
TGGTGCGGCCAGGCACTGGACCAGGATTAGGCTCGGCGCCGGTTGGGTTT
GCTGCGTATAAACTCAATCCGTTTCAGAGCGCGGCTCCGAGTGCGGGAAC
TGGGGCGTCGTCGTCGTCGTTTGTCTCGTCGCCTTCGAAGAGGAAGCCAC
CCAGTGAGTTGGCGGGGGCGTCCGAGGCCAGTTCTCAATCACAGTTTGGT
AGGCCTGCTGCTTCGATCAATCAGGGGGGCGAGGATGAAGAAGATGGTAG
AGGTAGAGGGGGTAGTCCTGCCGGGGGAGTAGGGGAGGAGGATTTGGAAG
CGGAGCCGAATGTGACGTTTGACGTGCCCAAAGTGCATGGGTTAAAGGAC
GCATCTTACAAGCCCTTGACAGGCGAGGAGCTAGAGATATGCGTGTTGCA
ATTGCGCTCAAAATTGTACCGCTTGACAGAGGTGAAGACTAAAGATGATG
CGGCGGGAGGGGGAGGGGCGTCGTCCTCCTCATCGGCGCAGCCACGACGT
GACTGGGTGGAGACCGGCGTGGGACAAGCCAAGGTACTGAAACCACTGTC
GAGGAATGACAATTTCTCGGCGCCTGCCCGGATAGTGATGCGGCGGGAGC
CTGGGACGAGTGTCTTGATCAATACGTTGCTGAAGGAGCCGGTGGGGGTA
GCCAAGCATGCTGACAAGGCGTTGCGGCTCACATGTTTGGATGAGAATGG
AATGCCTTCTACGTTTTTGTTCCGGTTTAAGACAACGGATGAGATGGAGC
AAATGCTAGGGGAGATTGAGAGGCAACTGGCCATTGCCGCGGGACCAGGA
AGGGGGGGTGGGATAAAGGAGGAAGCAGCCGTGGGGGAAGGGAAGAAGAA
GGATAAGGCCAATGCCGTCTGA
back to top

protein sequence of NO03G02400.1

>NO03G02400.1-protein ID=NO03G02400.1-protein|Name=NO03G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MATTTGISDPAIRHEDPTMTAASETTTTTTTTTTTTTATEGSSPAPESGS
ATKKKRGAGDDWAKSKNDVDNDDSSEIAEEGTVSGEFRRADPETLSKRRI
VKARRPPGMEGGDGSPAGSATGVEDKSVTANPFAALSLTRAKTDAIGGGG
VFGSGFPQTNAASILGVSGGGGGWGSTGAKGVDMVRPGTGPGLGSAPVGF
AAYKLNPFQSAAPSAGTGASSSSFVSSPSKRKPPSELAGASEASSQSQFG
RPAASINQGGEDEEDGRGRGGSPAGGVGEEDLEAEPNVTFDVPKVHGLKD
ASYKPLTGEELEICVLQLRSKLYRLTEVKTKDDAAGGGGASSSSSAQPRR
DWVETGVGQAKVLKPLSRNDNFSAPARIVMRREPGTSVLINTLLKEPVGV
AKHADKALRLTCLDENGMPSTFLFRFKTTDEMEQMLGEIERQLAIAAGPG
RGGGIKEEAAVGEGKKKDKANAV*
back to top
Synonyms
Publications