NO03G02390, NO03G02390 (gene) Nannochloropsis oceanica

Overview
NameNO03G02390
Unique NameNO03G02390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1659
Alignment locationchr3:688258..689916 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:688258..689916 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009668RNA_pol-assoc_fac_A49-like
Homology
The following BLAST results are available for this feature:
BLAST of NO03G02390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL067nonsL067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR049ngnoR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005683NSK005683Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02390.1NO03G02390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626765gene_1425Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02390.1NO03G02390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02390 ID=NO03G02390|Name=NO03G02390|organism=Nannochloropsis oceanica|type=gene|length=1659bp
ATGAGCTCCTCCGGCAAAAAACGCAAGAGCTTCAGCGAAACTAATGGCGC
CCCTGCCTCCTCCCCATCACAAAGGACCAATAAGGCGTTCCACCACCGCA
TCAAAGTAAACATCCGGCTGGCTGAGAACGTCCCCTCGGCCGACAGCGAA
AAACAAGAAACGGCCAATCCACTGGTTGTCCCGCCCGTGCTTGTCAGCTT
TCCCCACGGCCGCCCCCGGCAAGCCGAGACCCTCACCTTCCGCTGCCGGG
CCACGGACTCCAAAGGGGGGCAACGCCGACGCCGTCTCCGCCTGGCAGGC
GAGACCCCTCATGTGGCCTATTCAGCAGAACAACCCGCCGTGGCTCACAA
GAACACGGCGAAGTACATGGTGGGTATCTATCGGGAAAACACGCAGGAAG
TAGTGCTCTACCCCGTAGAGGCCATCGTGGCGCTGGAGCAGAAAGTCCGC
ATCCGCAACGCCGCAGGCGAGCTCCTGGGAATCGCGGCGGGAGCTGACGA
CGAAGAGGAATGCGGAGAAGAGGAAGAAGAGGAAGCGGCGAGAGTATCAT
CGTACGCCGAGAGACGCAAGTCGTTGGTGGACACGTTCGGGACCAAGAAA
AAACGACGGGTTATGCAATCGCAGGAAGAGAATCGGATTAGTGCCGATGC
TGTGGTGGGCCTCAATGCCTTGGGTGGGTTCCTGGCCGATTCTTTGAAAG
AAGTCCAAAAGGACGCTGCGGAGGCGAAGCAGACTCTTACCCCGGCAGAG
GCCTCAAGAGCGACGTTGTTGCCTCCCTACAACGTGCAGGCACGAAGTGT
GGATCAAGTTTATCTTCCTCGACGAATGCTGGGCGGGGAGGGGGTATGGG
ATAGCGTTGCACAGGAGCTTGAAGAGCTTTTAGGTCAAGCTTCAGATGCC
TTAGCCGCAACAGCGGCAGGACAAGGAGAGGATGGGAAGGAGAGAGGGGC
AGCGGGAGTGGGAGGGTCTCGTAGTGGTACCGGTCTGGTGCGCGAGACGA
TATTAAAAAGGTTTGAGAATTGGCCAGCGTTCGTCCGTCAGCTTATTGTG
AGCGCCCCTTTGCCTACCCTGGATGATTCAATAGGAGGTGGCGGTGATGA
TGGTGGTGGTATGAATGGAAGGAGGAGGGGAGATGGGGGGGTGGAGGTAG
ATCCGAGGAAGGAGCACATGTGTCGCTTGTTGCTGTTGAGGCATTTGTTT
GAGTTGTACCGGCTACCCCCCATGGTGAGAGGAGGGGCGAGTAGCCTATC
GATGGCTTTGGGGCTCGGAACGGTAAACCAGACGGTGTCGGTGGTGTTGC
TGGAGCATTTCTTCCAGTCTGAAGGGGAAGGGGAGGGGGAGGGAGGAAGG
GGAGGAGGTTTCGAGGAGAGGTACCAGAGACATACACGGACAAAGGCTTT
GACGGATAAATTGCTTTTGCACCTTTTGGTGTTGTGTTTGGTGGTGGGCG
GCTACCGGGTATCGGCTTCAAGGGTGGCCCTGGATCTGAGAATGAGCGTG
GGGGAGTGCACAACGTTGTTCAGGGAGACGGGAGCGACGGTAAGGAAGGT
TTATGGAGGTGCAGGTCATAGTGGATTTGGGGGGCAGATAGATGAGGAGA
AACAAGGAGAGGGTGGAGGAGGAAGAAAGAGGGGGAGGGGGAGTGGGGGG
GGGAGGTGA
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protein sequence of NO03G02390.1

>NO03G02390.1-protein ID=NO03G02390.1-protein|Name=NO03G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp
MSSSGKKRKSFSETNGAPASSPSQRTNKAFHHRIKVNIRLAENVPSADSE
KQETANPLVVPPVLVSFPHGRPRQAETLTFRCRATDSKGGQRRRRLRLAG
ETPHVAYSAEQPAVAHKNTAKYMVGIYRENTQEVVLYPVEAIVALEQKVR
IRNAAGELLGIAAGADDEEECGEEEEEEAARVSSYAERRKSLVDTFGTKK
KRRVMQSQEENRISADAVVGLNALGGFLADSLKEVQKDAAEAKQTLTPAE
ASRATLLPPYNVQARSVDQVYLPRRMLGGEGVWDSVAQELEELLGQASDA
LAATAAGQGEDGKERGAAGVGGSRSGTGLVRETILKRFENWPAFVRQLIV
SAPLPTLDDSIGGGGDDGGGMNGRRRGDGGVEVDPRKEHMCRLLLLRHLF
ELYRLPPMVRGGASSLSMALGLGTVNQTVSVVLLEHFFQSEGEGEGEGGR
GGGFEERYQRHTRTKALTDKLLLHLLVLCLVVGGYRVSASRVALDLRMSV
GECTTLFRETGATVRKVYGGAGHSGFGGQIDEEKQGEGGGGRKRGRGSGG
GR*
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Synonyms
Publications