NO03G02380, NO03G02380 (gene) Nannochloropsis oceanica

Overview
NameNO03G02380
Unique NameNO03G02380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length444
Alignment locationchr3:687425..687868 +

Link to JBrowse

Properties
Property NameValue
DescriptionGlutamyl-trna amidotransferase subunit c
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:687425..687868 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006450regulation of translational fidelity
GO:0006450regulation of translational fidelity
Vocabulary: INTERPRO
TermDefinition
IPR036113Asp/Glu-ADT_sf_sub_c
IPR003837Asp/Glu-ADT_csu
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
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BLAST of NO03G02380 vs. NCBI_GenBank
Match: EWM29665.1 (glutamyl-trna amidotransferase subunit c [Nannochloropsis gaditana])

HSP 1 Score: 154.8 bits (390), Expect = 2.000e-34
Identity = 82/147 (55.78%), Postives = 98/147 (66.67%), Query Frame = 0 
Query:    1 MKLVTIVALVFFTALPRSSAFLFTVPXXXXXXXXXXXXXXXXXXXXXHPEVTTELIKHTATLAQLQFDESEISSLVPRFEAFLNFVGKMQDVPDTTAGLAPGNMPTVDKVLRPDQASIFPNQDAIFANMAEQEDAYLSVPKVGEEDT 148
            M+   + + +   AL + SAFL  +                       PEVT ELIKHTATLAQL FDE EI +++PRF+AFL+FV +MQDVPD+ A  AP +MPTV +VLRPD  SIFPNQDAIF NMAEQEDA+L VPKVGEEDT
Sbjct:    1 MRDKALTSTLILQALLKGSAFLLPLAPSLPSSRLAAADSPSSSSLRQQPEVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGEEDT 147
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BLAST of NO03G02380 vs. NCBI_GenBank
Match: CBJ29461.1 (glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit [Ectocarpus siliculosus])

HSP 1 Score: 72.8 bits (177), Expect = 1.000e-9
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 0 
Query:   50 EVTTELIKHTATLAQLQFDESEISSLVPRFEAFLNFVGKMQDVPDTTAGLAPGNMPTVDKVLRPDQASIFPNQDAIFANMAEQEDAYLSVPKVGEED 147
            ++T +L++ TA LAQ+Q  + E+  L PR E FL FV  M++V + + G A   +      LR D A  F N  AI  NM  +E  YL VPKVGE++
Sbjct:   67 DITPDLVRKTAMLAQIQVSDEEVDVLAPRMEEFLGFVETMKEVAEASDG-AFATLNCGSDFLREDSADRFSNVAAIMENMPIEEGNYLRVPKVGEDE 162
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BLAST of NO03G02380 vs. NCBI_GenBank
Match: CEM04546.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 63.9 bits (154), Expect = 4.700e-7
Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 0 
Query:   51 VTTELIKHTATLAQLQFDESEISSLVPRFEAFLNFVGKMQDVPDTTAG---LAPGNMPTVDKVLRPDQASIFPNQDAIFANMAEQEDAYLSVPKVGE 145
            V   L++ TA LA L   + E+S +V +F+ FL FV  M+ +  +      ++P         LR D    F N++AI ANM E+ED +L +P+VGE
Sbjct:   87 VDEALVRKTAALAHLDLTDDEVSEMVHQFKDFLRFVDDMKAIDTSQLDIDVMSPRASVPYRDPLREDTVQPFDNREAIVANMPEEEDGFLRIPRVGE 183
The following BLAST results are available for this feature:
BLAST of NO03G02380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM29665.12.000e-3455.78glutamyl-trna amidotransferase subunit c [Nannochl... [more]
CBJ29461.11.000e-941.24glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amido... [more]
CEM04546.14.700e-736.08unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL067nonsL067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR049ngnoR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005682NSK005682Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02380.1NO03G02380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572049gene_1424Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100112g7gene975Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02380.1NO03G02380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02380 ID=NO03G02380|Name=NO03G02380|organism=Nannochloropsis oceanica|type=gene|length=444bp
ATGAAGTTGGTCACCATCGTAGCGCTTGTGTTCTTCACCGCCCTCCCAAG
AAGCAGCGCCTTTCTTTTCACAGTCCCCCACGCCGCTGCTTCCTCTACTT
CAGCCTCCCGCCTCGCGGCTGCCTCCTCCTCATCCCCGAAGCACCCCGAA
GTGACCACTGAACTTATCAAGCACACCGCCACGCTTGCCCAGCTTCAATT
CGATGAGTCTGAAATTTCAAGCCTTGTCCCGCGGTTCGAAGCGTTCTTAA
ACTTTGTCGGCAAGATGCAAGATGTGCCCGACACGACGGCCGGCCTAGCC
CCTGGTAACATGCCCACAGTGGACAAGGTATTGCGGCCCGATCAAGCTTC
CATATTTCCTAACCAAGATGCCATTTTTGCCAACATGGCTGAGCAGGAGG
ATGCGTACTTGAGCGTGCCCAAGGTCGGGGAGGAGGACACGTAG
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protein sequence of NO03G02380.1

>NO03G02380.1-protein ID=NO03G02380.1-protein|Name=NO03G02380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=148bp
MKLVTIVALVFFTALPRSSAFLFTVPHAAASSTSASRLAAASSSSPKHPE
VTTELIKHTATLAQLQFDESEISSLVPRFEAFLNFVGKMQDVPDTTAGLA
PGNMPTVDKVLRPDQASIFPNQDAIFANMAEQEDAYLSVPKVGEEDT*
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Synonyms
Publications