NO03G02340, NO03G02340 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G02340 vs. NCBI_GenBank
Match: EWM29663.1 (chorismate mutase [Nannochloropsis gaditana]) HSP 1 Score: 474.2 bits (1219), Expect = 3.800e-130 Identity = 254/315 (80.63%), Postives = 274/315 (86.98%), Query Frame = 0 Query: 53 RLTWGVPSITHTPNEATAT-SFPTSS--PPTASTHTGHGALASTTTADVMSLDSIRSTLIRQEDSIIFALIERAQFRRNEAIYLKGILQLDPSIPDYTFLNSLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPNPILTPLQFPALLAPNTVDVNAQILDLYINEIVSAVCKEGDDEQHGSSVLADITLLQAISRRIHLGKFVAEAKFLESEARYRALVAADDVDGVMALLTNTAVEARVLERAKLKASTYGQDITGETEECKVEPDVIAAIYRDIIIPLTKDVEVLYLFERVGRPVXXXXXXXXXXYRLRI 365 RLTWG PSITH+ +EA+ S P++S ++ ++ ASTTTADVMSLDSIRSTLIRQEDSIIFALIERAQFR+N+AIY KGILQLDPSIPDY FL +LSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLP+PILTPLQFPALLAPNTVDVNAQIL LYINE+V AVCKEGDDEQHGSSVLADITLLQA+SRRIHLGKFVAE KF E EA+YRALV ADDVDGVM+LLTN+AVEARVL RAKLKASTYGQDI GETE CKVEPDVIAAIYRD+IIPLTKDVEVLYLFERVGR YRLR+ Sbjct: 118 RLTWGAPSITHSHHEASEDGSVPSASFISTSSRVNSPSAVSASTTTADVMSLDSIRSTLIRQEDSIIFALIERAQFRQNQAIYAKGILQLDPSIPDYPFLKTLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPDPILTPLQFPALLAPNTVDVNAQILHLYINEVVPAVCKEGDDEQHGSSVLADITLLQALSRRIHLGKFVAETKFQEEEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQDIMGETEACKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVGRKPPAPLPGPASHYRLRV 432
BLAST of NO03G02340 vs. NCBI_GenBank
Match: CBJ48359.1 (Chorismate Mutase [Ectocarpus siliculosus]) HSP 1 Score: 272.3 bits (695), Expect = 2.200e-69 Identity = 150/265 (56.60%), Postives = 180/265 (67.92%), Query Frame = 0 Query: 100 SLDSIRSTLIRQEDSIIFALIERAQFRRNEAIYLKGILQLDPSIPDYTFLNSLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPNPILTPLQFPALLAPNTVDVNAQILDLYINEIVSAVCKEGDDEQHGSSVLADITLLQAISRRIHLGKFVAEAKFLESEARYRALVAADDVDGVMALLTNTAVEARVLERAKLKASTYGQDITG---ETEEC-------------KVEPDVIAAIYRDIIIPLTKDVEVLYLFERVGRP 349 SL+S+R +LIRQE++IIFALIER QFR N AIY +++ S + SFLEY+L ETEKLH VRRY S EE AFFP LP PIL PL FP LLAPN V+VN QIL Y++EIV +C+ GDD+QHGSSV+ D+ LQA+SRR+HLGKFVAE+KF E Y+ L A D GV+ LLTN AVE +VL+RA +KASTYG DI TE+ KV P I IYRD +IPLTKDVE+LYLF+R G P Sbjct: 122 SLESVRGSLIRQEETIIFALIEREQFRCNNAIYTDRTFRVNRSDAADIYGRDASFLEYMLSETEKLHATVRRYMSLEELAFFPMFLPEPILPPLDFPRLLAPNDVNVNDQILKRYVSEIVPMICEPGDDDQHGSSVVCDVNALQALSRRVHLGKFVAESKFQEDSKTYQDLCRAGDARGVLELLTNKAVEEKVLKRAFMKASTYGSDINDVPVSTEDAKGGDGAAKAEQNFKVNPQFIVDIYRDTVIPLTKDVEILYLFQRTGYP 386
BLAST of NO03G02340 vs. NCBI_GenBank
Match: XP_002177537.1 (probable chorismate mutase [Phaeodactylum tricornutum CCAP 1055/1] >EEC52000.1 probable chorismate mutase [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 247.7 bits (631), Expect = 5.700e-62 Identity = 145/284 (51.06%), Postives = 184/284 (64.79%), Query Frame = 0 Query: 95 TADVMSLDSIRSTLIRQEDSIIFALIERAQFRRNEAIYLKGILQL------DPSIPDYTFLNSLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLP---NPILTPLQFPALLAPNT-----VDVNAQILDLYINEIVSAVCKEGDDEQHGSSVLADITLLQAISRRIHLGKFVAEAKFLESEARYRALVAADDVDGVMALLTNTAVEARVLERAKLKASTYGQD-----------------ITGETEECKVEPDVIAAIYRDIIIPLTKDVEVLYLFERVGR 348 T DV+SLDSIRS+LIRQE++IIFALIERAQFR+NE +Y KG S+ D+ LSF+EY+L+ TE LH VRRYTSPEE AFFPE LP L L++P L + ++ N +L Y+ +IV +V ++GDDEQHGS+VL DI LQA+SRRIH GKFVAE+KF + Y+ LV A+D DGVM LLTNT VE +V+ RAKLKA+TYG + + K++P VI ++YRDI+IPLTK +EV YLF R GR Sbjct: 11 TVDVLSLDSIRSSLIRQEETIIFALIERAQFRQNEIVYRKGGFGNLGTPVGSTSVDDH----DLSFMEYMLVGTEALHCGVRRYTSPEEQAFFPERLPYGQMDALPLLEYPQELLSSVGGACDLNFNKALLQNYVEKIVPSVSQQGDDEQHGSTVLCDIAALQALSRRIHYGKFVAESKFRSDPSGYQQLVDANDADGVMKLLTNTVVEEKVIRRAKLKAATYGTEPLLSEMPPIKGADTTSIVAAAAAPGKIDPTVIESVYRDIVIPLTKVIEVAYLFRRCGR 290
BLAST of NO03G02340 vs. NCBI_GenBank
Match: XP_008873366.1 (chorismate mutase [Aphanomyces invadans] >ETV97805.1 chorismate mutase [Aphanomyces invadans]) HSP 1 Score: 245.0 bits (624), Expect = 3.700e-61 Identity = 130/258 (50.39%), Postives = 176/258 (68.22%), Query Frame = 0 Query: 101 LDSIRSTLIRQEDSIIFALIERAQFRRNEAIYLKGILQLDPSIPDYTFLNSL--SFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPNPILTPLQFPALLAPNTVDVNAQILDLYINEIVSAVCKEGDDE-QHGSSVLADITLLQAISRRIHLGKFVAEAKFLESEARYRALVAADDVDGVMALLTNTAVEARVLERAKLKASTYGQDITGET-------EECKVEPDVIAAIYRDIIIPLTKDVEVLYLFERVGRP 349 LD R+ LIRQE++IIFALIERAQF RN AIY K + + +S SFLE++L ETE+LH RRYTSP+EHAFFP LP+PIL PL + +L PNT+++N QI+ +Y+ +++ + ++ DD +GSS AD+ +LQA+S+RIH GKF+AEAKF RY L+ +D +G+M LTN AVE +V+ R + KASTYGQDI G T E CKV+P VIA +YR+ ++PLTK V+V YL +R+ P Sbjct: 9 LDDYRNVLIRQEETIIFALIERAQFPRNTAIYRKRADAAESLLSFKGKYHSFEGSFLEFMLSETERLHALNRRYTSPDEHAFFPSFLPDPILPPLDYQTVLMPNTININDQIMSVYLEKLLPHITQDIDDHTTYGSSANADVAVLQALSKRIHFGKFIAEAKFQAETERYTKLILNNDAEGIMDALTNLAVEDKVVMRVRFKASTYGQDIDGSTTHDATSFEHCKVDPQVIADLYRNFVMPLTKQVQVTYLLQRLHHP 266
BLAST of NO03G02340 vs. NCBI_GenBank
Match: XP_009829673.1 (chorismate mutase [Aphanomyces astaci] >ETV80726.1 chorismate mutase [Aphanomyces astaci]) HSP 1 Score: 244.6 bits (623), Expect = 4.900e-61 Identity = 133/273 (48.72%), Postives = 180/273 (65.93%), Query Frame = 0 Query: 93 TTTADVMSLDSIRSTLIRQEDSIIFALIERAQFRRNEAIYLKGILQLDPSIPDYTFLNSL-----SFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPNPILTPLQFPALLAPNTVDVNAQILDLYINEIVSAVCKEGDDE-QHGSSVLADITLLQAISRRIHLGKFVAEAKFLESEARYRALVAADDVDGVMALLTNTAVEARVLERAKLKASTYGQDITGET-----------EECKVEPDVIAAIYRDIIIPLTKDVEVLYLFERVGRP 349 T T + LD R+ LIRQE++IIF+LIERAQF RN IY K + D + +F SFLE++L ETE+LH RRYTSP+EHAFFP LP+PIL PL + ++L PNT+++N QI+ +Y+ +++ + + DD GSS ADI +LQA+S+RIH GKF+AEAKF RY AL+ A+D +G+M LTN AVE +V+ R + KASTYGQDI +T E CKV+P VIA +YR+ ++PLTK V+V YL +R+ P Sbjct: 2 TATPKKVLLDDYRNVLIRQEETIIFSLIERAQFLRNAPIYRK---RADATASLLSFKGKYNGFEGSFLEFMLSETERLHALNRRYTSPDEHAFFPSFLPDPILPPLDYQSVLIPNTININDQIMSVYLEKLLPHITHDSDDHTTFGSSANADIAVLQALSKRIHFGKFIAEAKFQAETKRYTALILANDAEGIMDALTNLAVEDKVVMRVRFKASTYGQDIVDDTTTTIHDNSNSIEHCKVDPQVIADLYRNFVMPLTKQVQVAYLLQRLHHP 271
BLAST of NO03G02340 vs. NCBI_GenBank
Match: XP_009829674.1 (chorismate mutase, variant [Aphanomyces astaci] >ETV80727.1 chorismate mutase, variant [Aphanomyces astaci]) HSP 1 Score: 244.6 bits (623), Expect = 4.900e-61 Identity = 133/273 (48.72%), Postives = 180/273 (65.93%), Query Frame = 0 Query: 93 TTTADVMSLDSIRSTLIRQEDSIIFALIERAQFRRNEAIYLKGILQLDPSIPDYTFLNSL-----SFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPNPILTPLQFPALLAPNTVDVNAQILDLYINEIVSAVCKEGDDE-QHGSSVLADITLLQAISRRIHLGKFVAEAKFLESEARYRALVAADDVDGVMALLTNTAVEARVLERAKLKASTYGQDITGET-----------EECKVEPDVIAAIYRDIIIPLTKDVEVLYLFERVGRP 349 T T + LD R+ LIRQE++IIF+LIERAQF RN IY K + D + +F SFLE++L ETE+LH RRYTSP+EHAFFP LP+PIL PL + ++L PNT+++N QI+ +Y+ +++ + + DD GSS ADI +LQA+S+RIH GKF+AEAKF RY AL+ A+D +G+M LTN AVE +V+ R + KASTYGQDI +T E CKV+P VIA +YR+ ++PLTK V+V YL +R+ P Sbjct: 2 TATPKKVLLDDYRNVLIRQEETIIFSLIERAQFLRNAPIYRK---RADATASLLSFKGKYNGFEGSFLEFMLSETERLHALNRRYTSPDEHAFFPSFLPDPILPPLDYQSVLIPNTININDQIMSVYLEKLLPHITHDSDDHTTFGSSANADIAVLQALSKRIHFGKFIAEAKFQAETKRYTALILANDAEGIMDALTNLAVEDKVVMRVRFKASTYGQDIVDDTTTTIHDNSNSIEHCKVDPQVIADLYRNFVMPLTKQVQVAYLLQRLHHP 271
BLAST of NO03G02340 vs. NCBI_GenBank
Match: XP_002176231.1 (probable chorismate mutase [Phaeodactylum tricornutum CCAP 1055/1] >EEC42784.1 probable chorismate mutase [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 243.8 bits (621), Expect = 8.300e-61 Identity = 145/273 (53.11%), Postives = 181/273 (66.30%), Query Frame = 0 Query: 95 TADVMSLDSIRSTLIRQEDSIIFALIERAQFRRNEAIYLKGILQL------DPSIPDYTFLNSLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLP---NPILTPLQFPALLAPNT-----VDVNAQILDLYINEIVSAVCKEGDDEQHGSSVLADITLLQAISRRIHLGKFVAEAKFLESEARYRALVAADDVDGVMALLTNTAVEARVLERAKLKASTYG-QDITGETEECKVEPD-----VIAAIYRDIIIPLTKDVEVLYLFERVGR 348 T DV+SLDSIRS+LIRQE++IIFALIERAQFR+NE +Y KG S+ D+ LSF+EY+L+ TE LH VRRYTSPEEHAFFPE LP L L++P L + ++ N +L Y+ +IV +V K+GDDEQHGS+VL DI LQA+SRRIH GKFVAE+K+ + Y+ LV A+D DGVM LLTN VE +V+ RAKLKA+TYG + + E K AA+YRDI+IPLTK +EV YLF R GR Sbjct: 11 TVDVLSLDSIRSSLIRQEETIIFALIERAQFRQNEIVYRKGGFGNLGTPVGSTSVEDH----DLSFMEYMLVGTEALHCGVRRYTSPEEHAFFPERLPYGQMDALPLLEYPQELLSSVGGACDLNFNKALLQNYVEKIVPSVSKQGDDEQHGSTVLCDIAALQALSRRIHYGKFVAESKYRSDPSGYQQLVDANDADGVMKLLTNRVVEEKVIRRAKLKAATYGTEPLLSEMPPIKGADTTSIVAAAAAVYRDIVIPLTKVIEVAYLFRRCGR 279
BLAST of NO03G02340 vs. NCBI_GenBank
Match: KOO23465.1 (chorismate mutase [Chrysochromulina sp. CCMP291]) HSP 1 Score: 242.7 bits (618), Expect = 1.800e-60 Identity = 132/255 (51.76%), Postives = 172/255 (67.45%), Query Frame = 0 Query: 93 TTTADVMSLDSIRSTLIRQEDSIIFALIERAQFRRNEAIYLKGILQLDPSIPDYTFL--NSLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPNPILTPLQFPALLAPNTVDVNAQILDLYINEIVSAVCKEGDDEQHGSSVLADITLLQAISRRIHLGKFVAEAKFLESEARYRALVAADDVDGVMALLTNTAVEARVLERAKLKASTYGQDITGETEECKVEPDVIAAIYRDIIIPLTKDVEVLYLFERV 346 T +SLDSIRS LIRQED+IIFALIERAQ R+N + Y +G S Y L S L+++LLETE+LH +VRRYTSP+EHAFFP LP P L + F +L P V++N +I+D+Y++ +V +C GDD+QHGSSV+ADI LQAIS+R+H G +VAE+KF +Y L+ A D +G+M LLTN AVE RVL+R +LKAST+GQ+I I A+YRD +IPLTK EV YL +R+ Sbjct: 2 TVPPSSLSLDSIRSALIRQEDTIIFALIERAQHRQNASCYERG------SANSYAVLAGKGASLLDFMLLETERLHARVRRYTSPDEHAFFPHRLPAPQLPMIDFEPVLHPCIVNLNGEIMDMYLSRVVPGLCGPGDDQQHGSSVVADIAALQAISKRVHYGFYVAESKFRAQPEQYTRLIEAGDEEGIMELLTNAAVEQRVLQRVRLKASTFGQEIEAP----------IVAMYRDYVIPLTKVAEVQYLLQRL 240
BLAST of NO03G02340 vs. NCBI_GenBank
Match: GAX92267.1 (chorismate mutase [Pythium insidiosum]) HSP 1 Score: 242.7 bits (618), Expect = 1.800e-60 Identity = 135/292 (46.23%), Postives = 188/292 (64.38%), Query Frame = 0 Query: 68 ATATSFPTSSPPTASTHTGHGALASTTTADVMSLDSIRSTLIRQEDSIIFALIERAQFRRNEAIYL----KGILQLDPSIPDYTFLNSLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPNPILTPLQFPALLAPNTVDVNAQILDLYINEIVSAVCKE-GDDEQHGSSVLADITLLQAISRRIHLGKFVAEAKFLESEARYRALVAADDVDGVMALLTNTAVEARVLERAKLKASTYGQDI------TGETEECKVEPDVIAAIYRDIIIPLTKDVEVLYLFERVGRP 349 ATAT+ +S H+ H + S V LD R+ LIRQE++IIFALIERAQF RN+A+Y+ G + Y SFL+++ ETEKLH RRYTSP+E+AF+P LP PIL L +P +L PN +++N QI+ +Y+ +I+ + + D +GS+ ADI +LQA+S+RIH GKF+AEAKF RY L+ A+D +G+MA LTN AVE +VL R +LKASTYGQD+ T ECKV+P +I+ +YRD ++PLTK+V+V+YL +R+ P Sbjct: 2 ATATA-------ASSVHSSHAVVFSDPMRPV-RLDDFRNVLIRQEETIIFALIERAQFARNQAVYIPRDAPGSVAFGGLKGKYDAFKG-SFLDFMFSETEKLHALTRRYTSPDENAFYPHLLPEPILPNLNYPQVLHPNRININDQIMSVYLEKILPGLTDDTSDATSYGSTATADIAVLQALSKRIHFGKFIAEAKFQAERERYTQLILANDAEGIMAALTNMAVEEKVLRRVQLKASTYGQDVQEGSQTTATANECKVDPQLISDLYRDFVMPLTKEVQVMYLLQRLAHP 284
BLAST of NO03G02340 vs. NCBI_GenBank
Match: OEU23051.1 (chorismate mutase, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 240.4 bits (612), Expect = 9.200e-60 Identity = 145/287 (50.52%), Postives = 187/287 (65.16%), Query Frame = 0 Query: 95 TADVMSLDSIRSTLIRQEDSIIFALIERAQFRRNEAIYLKGI------LQLDPSIPDYTFLNSLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPE-HLPNPILTPLQ-----FPALLA----PNTVDVNAQILDLYINEIVSAVCKEGDDEQHGSSVLADITLLQAISRRIHLGKFVAEAKFLESEARYRALVAADDVDGVMALLTNTAVEARVLERAKLKASTYGQD--------ITGE-------------TEECKVEPDVIAAIYRDIIIPLTKDVEVLYLFER 345 T++ +SLDSIR++LIRQE++IIFALIERAQFR+N A+Y KGI + +SFLEY+L ETEKLH VRRY SPEEHAF+PE L +P T L+ LL+ ++V+ N +L YI ++V A+C +GDDEQHGSSVL D+ +LQA+S+R+H GKFVAE+K+L Y+ALV A+D +GVM LLTN AVE +VL RA+LKA+TYG D + GE +E+ KV + IYRD+IIPLTKDVEV YLF R Sbjct: 4 TSEFLSLDSIRASLIRQEETIIFALIERAQFRQNNAVYEKGIEKERNLFSESDNXXXXXXXXDVSFLEYMLTETEKLHASVRRYRSPEEHAFYPEKQLVDPTDTVLKQQLEYQSGLLSDIGDASSVNFNEILLKKYIEDVVPAICAKGDDEQHGSSVLNDVAVLQALSKRVHYGKFVAESKYLGDPDAYQALVDANDAEGVMKLLTNEAVELKVLRRARLKAATYGTDPLLADLPPLYGEQKGIPSIALGDDGSEDNKVCALTVEIIYRDLIIPLTKDVEVAYLFRR 290 The following BLAST results are available for this feature:
BLAST of NO03G02340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G02340 ID=NO03G02340|Name=NO03G02340|organism=Nannochloropsis oceanica|type=gene|length=1110bpback to top protein sequence of NO03G02340.1 >NO03G02340.1-protein ID=NO03G02340.1-protein|Name=NO03G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bpback to top Synonyms
Publications
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