NO03G02330, NO03G02330 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G02330 vs. NCBI_GenBank
Match: EWM29666.1 (ras-related protein rab-5b [Nannochloropsis gaditana]) HSP 1 Score: 295.4 bits (755), Expect = 1.600e-76 Identity = 147/202 (72.77%), Postives = 170/202 (84.16%), Query Frame = 0 Query: 44 MTTRAREIKLVLLGDSGVGKSSLVLRFVTQSFKPYSESTIGASFMSKVVELDGQTVKVQIWDTAGQEKYHSLAPMYYRGAAAAVVVYDLTRAESFATLQRWVSELRERNPKDMEIMIAGNKNDLESERQVARSDAEVYAKSIGAGYVETSAKDDVGVRDLFLSLCRKVPGPMPSTGETARGGIYLASETQGEKERKG--TCC 244 M R REIKLV++GDSGVGKSSLVLRFVTQSFKP+SESTIGASFMSKV+ELDGQTVKVQIWDTAGQEKY SLAPMYYRGAAAA+VVYD+TR ESF TLQRWVSEL+E+ P+D+ IM+AGNK DLE +RQVA +AE YA+SIGA Y+ETSAKDD+ V+DLFLSLC++VP P+ G R GIYL+ K ++G TCC Sbjct: 1 MAARPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC 202
BLAST of NO03G02330 vs. NCBI_GenBank
Match: OQS05869.1 (Rab5 family GTPase [Thraustotheca clavata]) HSP 1 Score: 231.9 bits (590), Expect = 2.200e-57 Identity = 113/198 (57.07%), Postives = 148/198 (74.75%), Query Frame = 0 Query: 46 TRAREIKLVLLGDSGVGKSSLVLRFVTQSFKPYSESTIGASFMSKVVELDGQTVKVQIWDTAGQEKYHSLAPMYYRGAAAAVVVYDLTRAESFATLQRWVSELRERNPKDMEIMIAGNKNDLESERQVARSDAEVYAKSIGAGYVETSAKDDVGVRDLFLSLCRKVPGPMPSTGETARGGIYLASETQGEKERKGTCC 244 T+ARE+K+VLLGD+GVGKSSLVLRFVT +F+PYSESTIGASFMSK++ + Q +K QIWDTAGQEKYHSLAPMYYRGAAAA+VVYD+TR +S TL+ WV EL++ P ++ I IAGNK+DLE +R+V+ A+ YA IGA ++ETSAK+D V DLF ++ +++P P + G +++KG CC Sbjct: 5 TKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIMVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLTTLKNWVKELKQLGPDNIVIAIAGNKSDLEDKREVSSQTAKAYADEIGAVFIETSAKEDTNVSDLFKTISQQLPSPAGDNNALPE-----IVDPYGGEKKKGGCC 197
BLAST of NO03G02330 vs. NCBI_GenBank
Match: CCA22973.1 (Rab5 family GTPase putative [Albugo laibachii Nc14]) HSP 1 Score: 229.9 bits (585), Expect = 8.200e-57 Identity = 112/197 (56.85%), Postives = 149/197 (75.63%), Query Frame = 0 Query: 47 RAREIKLVLLGDSGVGKSSLVLRFVTQSFKPYSESTIGASFMSKVVELDGQTVKVQIWDTAGQEKYHSLAPMYYRGAAAAVVVYDLTRAESFATLQRWVSELRERNPKDMEIMIAGNKNDLESERQVARSDAEVYAKSIGAGYVETSAKDDVGVRDLFLSLCRKVPGPMPSTGETARGGIYLASETQGEKERKGTCC 244 +ARE+K+VLLGD+GVGKSSLVLRFVT +F+PYSESTIGASFMSK++ ++ +K QIWDTAGQEKYHSLAPMYYRGAAAA+VVYD+TR +S ATL+ WV EL++ P+++ I IAGNK+DLE +R+V + A+ YA IGA ++ETSAK+D V DLF+S+ +++P T + + G ++K CC Sbjct: 7 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIMVENTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLATLKNWVKELKQLGPENIVIAIAGNKSDLEDKREVPSAQAKAYADEIGALFIETSAKEDTNVSDLFISISKQLP-----TAAAETNALPEILDPYGGVQQKNRCC 198
BLAST of NO03G02330 vs. NCBI_GenBank
Match: GAY05152.1 (Rab5 family GTPase, putative [Pythium insidiosum] >GAX94201.1 Rab5 family GTPase, putative [Pythium insidiosum]) HSP 1 Score: 229.2 bits (583), Expect = 1.400e-56 Identity = 113/199 (56.78%), Postives = 148/199 (74.37%), Query Frame = 0 Query: 45 TTRAREIKLVLLGDSGVGKSSLVLRFVTQSFKPYSESTIGASFMSKVVELDGQTVKVQIWDTAGQEKYHSLAPMYYRGAAAAVVVYDLTRAESFATLQRWVSELRERNPKDMEIMIAGNKNDLESERQVARSDAEVYAKSIGAGYVETSAKDDVGVRDLFLSLCRKVPGPMPSTGETARGGIYLASETQGEKERKGTCC 244 +++ARE+K+VLLGD+GVGKSSLVLRFVT +F+PYSESTIGASFMSK++ ++ +K QIWDTAGQEKYHSLAPMYYRGAAAA+VVYD+TR +S TL+ WV EL++ P ++ I IAGNK+DLE +R+V S A YA+ IGA ++ETSAK+D V DLF+ + +P T T + + G ++KG CC Sbjct: 4 SSKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLVVNDVPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLTTLKNWVKELKQLGPDNIVIAIAGNKSDLEEKREVPASQARAYAEEIGALFIETSAKEDTNVSDLFIKISEALP-----TSSTESNALPEIVDPYGGGKKKGGCC 197
BLAST of NO03G02330 vs. NCBI_GenBank
Match: XP_008879649.1 (hypothetical protein H310_13792 [Aphanomyces invadans] >ETV91723.1 hypothetical protein H310_13792 [Aphanomyces invadans]) HSP 1 Score: 228.8 bits (582), Expect = 1.800e-56 Identity = 113/198 (57.07%), Postives = 147/198 (74.24%), Query Frame = 0 Query: 46 TRAREIKLVLLGDSGVGKSSLVLRFVTQSFKPYSESTIGASFMSKVVELDGQTVKVQIWDTAGQEKYHSLAPMYYRGAAAAVVVYDLTRAESFATLQRWVSELRERNPKDMEIMIAGNKNDLESERQVARSDAEVYAKSIGAGYVETSAKDDVGVRDLFLSLCRKVPGPMPSTGETARGGIYLASETQGEKERKGTCC 244 T+ARE+K+VLLGD+GVGKSSLVLRFVT +F+PYSESTIGASFMSK++ + Q +K QIWDTAGQEKYHSLAPMYYRGAAAA+VVYD+TR +S TL+ WV EL++ P ++ I IAGNK+DLE +R+V+ + A+ YA IGA ++ETSAK+D V DLF ++ +++P P + G + KG CC Sbjct: 6 TKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLVTLKNWVKELKQLGPDNIVIAIAGNKSDLEDQREVSSATAKAYADEIGAVFIETSAKEDTNVLDLFKTISQQLPSPAGDNHALPE-----IVDPYGSGKAKGGCC 198
BLAST of NO03G02330 vs. NCBI_GenBank
Match: CCI41542.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 228.4 bits (581), Expect = 2.400e-56 Identity = 112/197 (56.85%), Postives = 147/197 (74.62%), Query Frame = 0 Query: 47 RAREIKLVLLGDSGVGKSSLVLRFVTQSFKPYSESTIGASFMSKVVELDGQTVKVQIWDTAGQEKYHSLAPMYYRGAAAAVVVYDLTRAESFATLQRWVSELRERNPKDMEIMIAGNKNDLESERQVARSDAEVYAKSIGAGYVETSAKDDVGVRDLFLSLCRKVPGPMPSTGETARGGIYLASETQGEKERKGTCC 244 +ARE+K+VLLGD+GVGKSSLVLRFVT +F+PYSESTIGASFMSK++ ++ +K QIWDTAGQEKYHSLAPMYYRGAAAA+VVYD+TR +S ATL+ WV EL++ P+++ I IAGNK+DLE +R+V + A+ YA IGA ++ETSAK+D V DLF+S+ +++P T + G + K CC Sbjct: 7 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIMVENTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLATLKNWVKELKQLGPENIVIAIAGNKSDLEDKREVPSAQAKAYADEIGALFIETSAKEDTNVSDLFISISKQLPVAAAETNALPE-----ILDPYGGVQHKNRCC 198
BLAST of NO03G02330 vs. NCBI_GenBank
Match: OQR82480.1 (Rab5 family GTPase [Achlya hypogyna]) HSP 1 Score: 228.4 bits (581), Expect = 2.400e-56 Identity = 113/198 (57.07%), Postives = 151/198 (76.26%), Query Frame = 0 Query: 46 TRAREIKLVLLGDSGVGKSSLVLRFVTQSFKPYSESTIGASFMSKVVELDGQTVKVQIWDTAGQEKYHSLAPMYYRGAAAAVVVYDLTRAESFATLQRWVSELRERNPKDMEIMIAGNKNDLESERQVARSDAEVYAKSIGAGYVETSAKDDVGVRDLFLSLCRKVPGPMPSTGETARGGIYLASETQGEKERKGTCC 244 T+ARE+K+VLLGD+GVGKSSLVLRFVT +F+PYSESTIGASFMSK++ + Q +K QIWDTAGQEKYHSLAPMYYRGAAAA+VVYD+TR +S TL+ WV EL++ P ++ I IAGNK+DL+ +R+V+ A+ YA IGA ++ETSAK+D V DLF ++ +++P P +G+ + + G ++KG CC Sbjct: 31 TKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLQTLKNWVKELKQLGPDNIVIAIAGNKSDLKDKREVSSETAKAYADEIGAVFIETSAKEDTNVSDLFKTISKQLPSP---SGD--NNALPEIVDPYGGGKKKGGCC 223
BLAST of NO03G02330 vs. NCBI_GenBank
Match: XP_008617462.1 (Ras-like protein Rab-31 [Saprolegnia diclina VS20] >EQC29127.1 Ras-like protein Rab-31 [Saprolegnia diclina VS20]) HSP 1 Score: 228.0 bits (580), Expect = 3.100e-56 Identity = 113/198 (57.07%), Postives = 147/198 (74.24%), Query Frame = 0 Query: 46 TRAREIKLVLLGDSGVGKSSLVLRFVTQSFKPYSESTIGASFMSKVVELDGQTVKVQIWDTAGQEKYHSLAPMYYRGAAAAVVVYDLTRAESFATLQRWVSELRERNPKDMEIMIAGNKNDLESERQVARSDAEVYAKSIGAGYVETSAKDDVGVRDLFLSLCRKVPGPMPSTGETARGGIYLASETQGEKERKGTCC 244 T+ARE+K+VLLGD+GVGKSSLVLRFVT +F+PYSESTIGASFMSK++ + Q +K QIWDTAGQEKYHSLAPMYYRGAAAA+VVYD+TR +S TL+ WV EL++ P ++ I IAGNK+DL+ +R+V+ A+ YA IGA +VETSAK+D V DLF ++ +++P P + G ++KG CC Sbjct: 5 TKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLQTLKNWVKELKQLGPDNIVIAIAGNKSDLKDKREVSSETAKAYADEIGAVFVETSAKEDTNVSDLFKTISQQLPSPAGDNNALPE-----IVDPYGGGKKKGGCC 197
BLAST of NO03G02330 vs. NCBI_GenBank
Match: XP_012200453.1 (hypothetical protein SPRG_05781 [Saprolegnia parasitica CBS 223.65] >KDO28910.1 hypothetical protein SPRG_05781 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 227.6 bits (579), Expect = 4.100e-56 Identity = 112/198 (56.57%), Postives = 147/198 (74.24%), Query Frame = 0 Query: 46 TRAREIKLVLLGDSGVGKSSLVLRFVTQSFKPYSESTIGASFMSKVVELDGQTVKVQIWDTAGQEKYHSLAPMYYRGAAAAVVVYDLTRAESFATLQRWVSELRERNPKDMEIMIAGNKNDLESERQVARSDAEVYAKSIGAGYVETSAKDDVGVRDLFLSLCRKVPGPMPSTGETARGGIYLASETQGEKERKGTCC 244 T+ARE+K+VLLGD+GVGKSSLVLRFVT +F+PYSESTIGASFMSK++ + Q +K QIWDTAGQEKYHSLAPMYYRGAAAA+VVYD+TR +S TL+ WV EL++ P ++ I IAGNK+DL+ +R+V+ A+ YA IGA ++ETSAK+D V DLF ++ +++P P + G ++KG CC Sbjct: 5 TKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLQTLKNWVKELKQLGPDNIVIAIAGNKSDLKDKREVSSETAKAYADEIGAVFIETSAKEDTNVSDLFKTISQQLPSPAGDNNALPE-----IVDPYGGGKKKGGCC 197
BLAST of NO03G02330 vs. NCBI_GenBank
Match: XP_024578773.1 (gtp binding protein [Plasmopara halstedii] >CEG42404.1 gtp binding protein [Plasmopara halstedii]) HSP 1 Score: 227.6 bits (579), Expect = 4.100e-56 Identity = 111/201 (55.22%), Postives = 147/201 (73.13%), Query Frame = 0 Query: 43 TMTTRAREIKLVLLGDSGVGKSSLVLRFVTQSFKPYSESTIGASFMSKVVELDGQTVKVQIWDTAGQEKYHSLAPMYYRGAAAAVVVYDLTRAESFATLQRWVSELRERNPKDMEIMIAGNKNDLESERQVARSDAEVYAKSIGAGYVETSAKDDVGVRDLFLSLCRKVPGPMPSTGETARGGIYLASETQGEKERKGTCC 244 T ++ARE+K+VLLGD+GVGKSSLVLRFVT +F+PYSESTIGASFMSK++ ++ +K QIWDTAGQEKYHSLAPMYYRGAAAA+VVYD+TR +S TL+ WV EL++ P ++ I IAGNK+DLE +R+V S A YA+ IGA ++ETSAK+D V DLF+ + + +P + + G K++ +CC Sbjct: 4 TGNSKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIVVNDTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLTTLKNWVKELKQLGPDNIVIAIAGNKSDLEEKREVPASQARAYAEEIGALFIETSAKEDTNVSDLFIQISQALPTASAESNALPE----IVDPYGGNKKKSSSCC 200 The following BLAST results are available for this feature:
BLAST of NO03G02330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G02330 ID=NO03G02330|Name=NO03G02330|organism=Nannochloropsis oceanica|type=gene|length=3270bpback to top protein sequence of NO03G02330.1 >NO03G02330.1-protein ID=NO03G02330.1-protein|Name=NO03G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=244bpback to top Synonyms
Publications
|