NO03G02200, NO03G02200 (gene) Nannochloropsis oceanica

Overview
NameNO03G02200
Unique NameNO03G02200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length915
Alignment locationchr3:651089..652003 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:651089..652003 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO03G02200 vs. NCBI_GenBank
Match: EWM29677.1 (hypothetical protein Naga_100299g3 [Nannochloropsis gaditana])

HSP 1 Score: 230.7 bits (587), Expect = 6.000e-57
Identity = 129/267 (48.31%), Postives = 151/267 (56.55%), Query Frame = 0 
Query:    1 MTTSIRFSSRR--SWPPASLSSASPFLKLLVLIVLLKLCQQSRGPTNTGY--GVFLVAATVIPANTGRRPSHPEASVVSACGGRLSPAQGSP----RVVAWGEGWELDEDIWERLGTRILDFVLRRKEPEEPHPLRMQRWTISMRRLPFFRRVIRHMQFYPDGRCEVEEEIGGRPLLFKHQ----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPPLMQGKWKYDKYGLNWELEEKGLKHFFHAELIWHSFGDRPKMHCG 256
            MT ++  S +R  S  P   +   P L LL ++V +     S    +  +      VAA +     GRR           C GR +P    P     V+AWG GWE D+D+WERLGTRIL+FVLRRKEPEEPHPLRMQRWTISMRR PFFR V+RHMQFY DGRCEVEEE+   PL  K +                                        PP +QGKWKYDKYGLNWELEE GL++F+HAELIWHSFGDRPKMHCG
Sbjct:    1 MTRALCGSHQRCASRGPVGGAVTCPLLLLLKILVFVMYISPSPRSVHASHHQPAMNVAAVIGAPFIGRRSG-------ETCPGRRAPGTVCPPSSRLVLAWGGGWEFDDDVWERLGTRILNFVLRRKEPEEPHPLRMQRWTISMRRFPFFRLVVRHMQFYVDGRCEVEEEVHSPPLFPKRRKKAGQSALPSAIRAGKGESAQSRKLRKRRPHVKKAKIAEEPPTLQGKWKYDKYGLNWELEEGGLRYFYHAELIWHSFGDRPKMHCG 260
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BLAST of NO03G02200 vs. NCBI_GenBank
Match: CEL98275.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 81.3 bits (199), Expect = 5.900e-12
Identity = 53/176 (30.11%), Postives = 77/176 (43.75%), Query Frame = 0 
Query:  116 LRRKEPE---EPHPLRMQRWTISMRRLPFFRRVIRHMQFYPDGRCEVEEEIGGRPLLFKHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPPLMQGKWKYDKYGLNWELEEKGLKHFFHAELIWHSFGDRPKMHCGVIVRNRGPRSLLPPWLFRPVVGVFSGLGNGTDT 289
            L RK+ E    PHPLRM+ W + +RR  F RR    + F  DG  +  +                                                    +G+W+ DK+G+ WE       H + AE+ W+ FG +P+M+ GVI R+R  R+ +   LFRPV+G F+G+G GTDT
Sbjct:   49 LFRKQTEADDSPHPLRMEEWKLRVRRGLFRRRSEMRINFRRDGSLQTSDG--------------------------------------------------HKGEWRLDKFGVMWEFLVDNTTHRYMAEVHWNVFGSQPRMYKGVITRDR--RAPIRADLFRPVIGTFTGIGCGTDT 172
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BLAST of NO03G02200 vs. NCBI_GenBank
Match: CBJ48964.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.8 bits (190), Expect = 6.500e-11
Identity = 53/174 (30.46%), Postives = 73/174 (41.95%), Query Frame = 0 
Query:  119 KEPEEPHPLRMQRWTISMRRLPFFRRVIRHMQFYPDGRCEVEEEIGGRPLLFKHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPPLMQGKWKYDKYGLNWELEE--KGLKHFFH--AELIWHSFGDRPKMHCGVIVRNRGPRSLLPPWLFRPVVGVFSGLGNGTDT 289
            +E +E HPLR Q WT+ +R  P+ RR  + + F+ +G     +                                                    +G+W +D  GL W++    +      H  AEL W+ FG +P+M  G I R+R P S LPPWLFRPVVG F G G G DT
Sbjct:   59 RESQESHPLRTQDWTLQIRSSPWTRRE-QEVTFHRNGTMSSNDG--------------------------------------------------NKGEWWFDVGGLYWDVNTTIRAAPTVLHHKAELHWNVFGSQPRMFRGTITRDRLPNSPLPPWLFRPVVGSFIGSGVGDDT 181
The following BLAST results are available for this feature:
BLAST of NO03G02200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM29677.16.000e-5748.31hypothetical protein Naga_100299g3 [Nannochloropsi... [more]
CEL98275.15.900e-1230.11unnamed protein product [Vitrella brassicaformis C... [more]
CBJ48964.16.500e-1130.46conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL067nonsL067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR049ngnoR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005664NSK005664Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02200.1NO03G02200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572002gene_1406Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100299g3gene959Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02200.1NO03G02200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02200 ID=NO03G02200|Name=NO03G02200|organism=Nannochloropsis oceanica|type=gene|length=915bp
ATGACGACCTCAATACGATTTAGCAGTAGGAGAAGCTGGCCTCCCGCCTC
TCTCTCGTCCGCCTCCCCCTTTCTCAAGCTCCTGGTCCTGATAGTCCTGC
TAAAGCTCTGCCAACAATCACGAGGCCCCACGAACACAGGATATGGCGTT
TTCCTTGTCGCCGCGACCGTCATACCTGCGAATACGGGTCGCCGTCCCTC
CCATCCCGAAGCCTCTGTCGTGTCCGCGTGTGGTGGTCGTCTTAGTCCAG
CCCAAGGCTCCCCCAGAGTAGTGGCATGGGGAGAAGGATGGGAGCTGGAC
GAGGACATCTGGGAGCGATTAGGCACGCGAATCCTTGACTTTGTCTTGCG
GCGGAAGGAGCCGGAGGAGCCCCACCCCTTGAGGATGCAACGATGGACGA
TCTCTATGCGTCGTTTGCCCTTTTTCCGTCGGGTCATCCGACACATGCAA
TTTTACCCCGATGGCCGCTGCGAGGTAGAGGAAGAGATTGGCGGACGGCC
ATTGCTGTTCAAGCACCAGCATCAAGCAACAGCTAAAGCGAAGGCAGCAG
TAACAGCAGGAGGGAAAGGAGGAGGGAACGGACAACGACGGAAACGAAGA
AAGAAGGGAGGGAGGGGGGCAGCCGGACCGCCACTCATGCAAGGGAAGTG
GAAATATGACAAGTACGGTTTAAACTGGGAGTTGGAAGAGAAGGGATTAA
AGCACTTTTTCCACGCCGAATTGATTTGGCATTCTTTCGGGGATCGGCCC
AAGATGCACTGTGGGGTGATCGTGAGGAACCGGGGCCCGCGCTCCCTGTT
GCCGCCTTGGTTGTTCCGGCCGGTTGTGGGTGTCTTTTCCGGGTTAGGCA
ATGGCACAGATACGTGCCTGGTGCCTGAAGCACAGAGTAACGAGAATCGG
TTTCGGAATTACTAG
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protein sequence of NO03G02200.1

>NO03G02200.1-protein ID=NO03G02200.1-protein|Name=NO03G02200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MTTSIRFSSRRSWPPASLSSASPFLKLLVLIVLLKLCQQSRGPTNTGYGV
FLVAATVIPANTGRRPSHPEASVVSACGGRLSPAQGSPRVVAWGEGWELD
EDIWERLGTRILDFVLRRKEPEEPHPLRMQRWTISMRRLPFFRRVIRHMQ
FYPDGRCEVEEEIGGRPLLFKHQHQATAKAKAAVTAGGKGGGNGQRRKRR
KKGGRGAAGPPLMQGKWKYDKYGLNWELEEKGLKHFFHAELIWHSFGDRP
KMHCGVIVRNRGPRSLLPPWLFRPVVGVFSGLGNGTDTCLVPEAQSNENR
FRNY*
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Synonyms
Publications