NO03G02180, NO03G02180 (gene) Nannochloropsis oceanica

Overview
NameNO03G02180
Unique NameNO03G02180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length525
Alignment locationchr3:648391..648915 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:648391..648915 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO03G02180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL067nonsL067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR049ngnoR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02180.1NO03G02180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571996gene_1404Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02180.1NO03G02180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02180 ID=NO03G02180|Name=NO03G02180|organism=Nannochloropsis oceanica|type=gene|length=525bp
ATGCCGCCGCCTGAGCCGGCCCTGCCGCCCGCAGCTGTCGGGAAAGGTGC
AACCGAGAAGCTTATCGAGCTTATAACGCTGCTAACACTTGGAGGTCTCT
TCCTCGGTGCCTTGTATTTGAAAGTCTACGGTTTTGCATACCCTTCCAGC
CATAGAAGAAATTATTGCAGTAGTCATAGTACCCTGTTCCACTTGATCGG
AGGTACAGGGGGAGGCCGGCAAGGCGAGGACGAGCTGCGCGAGATTATGG
TGCTGGCAAAGCACGCTCAAATGCGAGGGGAAATCATGGAGTACGGAGGC
CTGAGGGGTTGGCTGGAGCACTACATGGCCAGGAAAAAGGCCAGCCTTCC
CGACAAGATACGGCATAATGTTGAAGGAGATGTACAGCCCGAGACATCAT
CGACTCTACCGGTGCAGGAAAGACCCAAAGCAAGCGCAGGCTCGTATTTT
TTCACAGCACTCATGGCCTCCCTACTGGCGGCAGTATGCGTATTGCACCA
CCACAGCAAAGCCTTGACGTCTTAA
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protein sequence of NO03G02180.1

>NO03G02180.1-protein ID=NO03G02180.1-protein|Name=NO03G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MPPPEPALPPAAVGKGATEKLIELITLLTLGGLFLGALYLKVYGFAYPSS
HRRNYCSSHSTLFHLIGGTGGGRQGEDELREIMVLAKHAQMRGEIMEYGG
LRGWLEHYMARKKASLPDKIRHNVEGDVQPETSSTLPVQERPKASAGSYF
FTALMASLLAAVCVLHHHSKALTS*
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Synonyms
Publications