NO03G02170, NO03G02170 (gene) Nannochloropsis oceanica

Overview
NameNO03G02170
Unique NameNO03G02170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1374
Alignment locationchr3:645887..647260 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:645887..647260 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G02170 vs. NCBI_GenBank
Match: EWM29680.1 (hypothetical protein Naga_100299g7 [Nannochloropsis gaditana])

HSP 1 Score: 289.3 bits (739), Expect = 2.100e-74
Identity = 142/163 (87.12%), Postives = 155/163 (95.09%), Query Frame = 0 
Query:  249 ATNSIKVEVVETDMTPGADGPTYSIKLNMNGRSYVAKRHHNKLRSLVDGLRDRGYRVWRPFPEVEEMVGQAPVKVENSLVEALPFYEGFGYSIKSLASTMLKSTSAAHLRKKRSVQLEQMSARIDAFLKTVFLENDDLQYEQVVSQFFWEPLEKKLPVLLEEE 412
            A+N+IKVEVVETDMTPGADGPTY IKLNMNGRSY+AKRHHNKLRSLV+GLR RGYRVWRPFPEVE+M+ Q+PVKVENSLVEALPFYEGFGYSIKSLASTMLKSTSA+HLRKKRSVQLEQMS RIDAFLKTVFLENDDL+YEQ V  FFWEPL+KKLP ++EE+
Sbjct:  269 ASNTIKVEVVETDMTPGADGPTYHIKLNMNGRSYMAKRHHNKLRSLVEGLRARGYRVWRPFPEVEDMMRQSPVKVENSLVEALPFYEGFGYSIKSLASTMLKSTSASHLRKKRSVQLEQMSQRIDAFLKTVFLENDDLEYEQEVYHFFWEPLQKKLPPVMEED 431
The following BLAST results are available for this feature:
BLAST of NO03G02170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29680.12.100e-7487.12hypothetical protein Naga_100299g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL067nonsL067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR049ngnoR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005662NSK005662Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02170.1NO03G02170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571993gene_1403Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100299g7gene955Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02170.1NO03G02170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02170 ID=NO03G02170|Name=NO03G02170|organism=Nannochloropsis oceanica|type=gene|length=1374bp
ATGTATTCCGGCACATCTTACGCCTCGGGCAACCCATATGTTGTAGGGGG
CTACCGGGTCTCTTCGACATCCAGCACCAACACGACAACACATGCTAACC
CGGTGGCCCTGAGCACCTCCAGCCCCCTCAGCACCACCACCACTTCAAGC
CCGGTGACTGCATACATCAGCAGCAGCACCACCATGACGTCGACAAGCGA
TTGTTGTGCCTCCACCTCGTCCTTGTCCTCACCTACAAACGCAGCGCCTC
CCAGCAGCAGTTCGACTCCCTACGGTGGCGTGGGCCTCATCTCCTCCACA
TTGGCAGGAACCAACACCTGCAGCAGCACCAGTAGCACCAAAAATATCTC
CTCACGTAAACCGATCGCGCCACTGCCACTTTCGTCATTATCATCATTGT
CATCACAGCCCGATACGAAAATAACTCCTGCAGTGTCCTCCCTCTTGTCC
TCCCAACTGCCCTCGGCTTCGCCCCACTCCCCAACAACCGCCAGCTCACC
CTACAGCACATTTCCCATCAGAGCGAGTGGCGCGAATGAGGTGTGCAGCA
GCGGTAGCAGCAGTAATAGCGATACTACCTCCTCTTGCTCCTCTCCACGG
ACTCAGACGAGAAGTACCAACAACTACCAGCGCAGCAGCAGTGGCACCCT
AAGCCAAGCAGCCGCTGCCTTCGCCGCAACAGCAGCCGCTGCCGGCTCCC
GAAACGGGAAGAGATCATCCCGCACCTGTGGGGGAGGGCCTTCAGCTACC
AACAGCATCAAGGTGGAGGTGGTGGAGACTGACATGACGCCTGGCGCGGA
CGGGCCTACTTATTCGATCAAGCTCAACATGAATGGTCGGAGCTACGTAG
CGAAGCGGCACCATAACAAGCTGCGCTCGCTTGTGGACGGACTCCGCGAT
CGGGGATATCGGGTCTGGCGACCTTTCCCAGAGGTTGAGGAGATGGTTGG
GCAAGCTCCCGTAAAGGTGGAGAACAGCTTAGTGGAAGCATTGCCATTCT
ACGAGGGTTTTGGGTATTCAATCAAGAGTCTTGCGTCGACCATGCTGAAA
AGCACGAGCGCAGCGCATTTGCGGAAGAAGCGCTCGGTGCAGCTGGAGCA
GATGTCGGCGCGCATTGACGCGTTTTTGAAAACCGTTTTTTTGGAAAATG
ACGACTTGCAGTATGAGCAAGTGGTGTCCCAATTTTTTTGGGAGCCGCTG
GAGAAGAAGCTACCGGTGTTGCTTGAAGAGGAGGGGTGGGAGGACGGAGA
AGGAGAGTCAGATACGGAGGAAGAAGGGGAGGGAAGCAGTTCCTCGGACG
AAGAGGAGGATTTAGGGAGAGAGGGGGGGAGGGAGACGGCGGTGCAGGCC
GGTATGGTGCGGATGCGGAAGTGA
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protein sequence of NO03G02170.1

>NO03G02170.1-protein ID=NO03G02170.1-protein|Name=NO03G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp
MYSGTSYASGNPYVVGGYRVSSTSSTNTTTHANPVALSTSSPLSTTTTSS
PVTAYISSSTTMTSTSDCCASTSSLSSPTNAAPPSSSSTPYGGVGLISST
LAGTNTCSSTSSTKNISSRKPIAPLPLSSLSSLSSQPDTKITPAVSSLLS
SQLPSASPHSPTTASSPYSTFPIRASGANEVCSSGSSSNSDTTSSCSSPR
TQTRSTNNYQRSSSGTLSQAAAAFAATAAAAGSRNGKRSSRTCGGGPSAT
NSIKVEVVETDMTPGADGPTYSIKLNMNGRSYVAKRHHNKLRSLVDGLRD
RGYRVWRPFPEVEEMVGQAPVKVENSLVEALPFYEGFGYSIKSLASTMLK
STSAAHLRKKRSVQLEQMSARIDAFLKTVFLENDDLQYEQVVSQFFWEPL
EKKLPVLLEEEGWEDGEGESDTEEEGEGSSSSDEEEDLGREGGRETAVQA
GMVRMRK*
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Synonyms
Publications