NO03G02090, NO03G02090 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G02090 vs. NCBI_GenBank
Match: XP_002414114.1 (nibrin, putative [Ixodes scapularis] >EEC17422.1 nibrin, putative [Ixodes scapularis]) HSP 1 Score: 111.7 bits (278), Expect = 1.100e-20 Identity = 69/237 (29.11%), Postives = 126/237 (53.16%), Query Frame = 0 Query: 35 KKKNKKPYYHLVAG-DFVVGRKNCDIIYNKYDTTISRQHARITVLPLQPEEVIAVGTAQTIQVTDLGSRYHTLVNDVQLPPQATHILRSGDVLTFGRYDTKARI-WHKPLVLCLSRVSATTKQTLKEAAAKAGAHIVDKWRSTCTHLIVGKTATATTKVCLAVVNSRPVVDVKWLMQGVLGRSSVGVSLPEPAKYLPDWSSVAMV-----RDLNKTRNSLFGELLFLYVAADETEEL 265 ++K + ++ L+ G ++ VGRK+ II + D ++SR HA +TV + + + V +++ DLGS+Y T +N+V+L ++++GD++TFG+ + + + P+V+ S + K+ LKE+AAK G ++ +W CTHL++ + T K A+V ++PVV +L V S P+ Y+PD S + D N R +LF +F ++ + +L Sbjct: 5 RRKTGETFFQLLCGEEYTVGRKDVQIIVDG-DASVSRSHALLTVSAVPHDRIDDVSFVPLLRLKDLGSKYGTRLNNVRLAANEETVVQNGDIVTFGQLGSSFTVHYEPPMVITSSCLQPDEKEKLKESAAKLGGRVMPEWSDACTHLVM-SSIRLTVKTTSALVAAKPVVKPTFLYDTVSRLRSKNWMDLNPSDYIPDISEENLTVPKAELDQNPARKTLFSGKVFYFLDKSQHAKL 239
BLAST of NO03G02090 vs. NCBI_GenBank
Match: XP_002906623.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY66024.1 conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 111.7 bits (278), Expect = 1.100e-20 Identity = 76/231 (32.90%), Postives = 117/231 (50.65%), Query Frame = 0 Query: 43 YHLVAGDFVVGRKNCDIIYNKYDTTISRQHARITVLPLQPEEVIAVGTAQTIQVTDLGSRYHTLVNDVQLPPQATHILRSGDVLTFGRYDTKARIWHKPLVLCLSRVSATTKQTLKEAAAKAGAHIVDKWRSTCTHLIVGK-TATATTKVCLAVVNSRPVVDVKWLMQGVLGRSSVGVSLPEPAKYLPDWSSVAMVRD---LNKTRNSLFGELLFLYVAADETEELVKDAG 270 ++LVAG++ VGRK C ++ D++ISR HA I V L PE++ T T+++ D SR+ + VN Q+ T ILR GD ++FG T R+ ++ VL SR+ + + + + G H+V TH I+ AT KV A+V ++PVV W+ +L RSS+ LP ++LP V V N R SLF +++ +EL+ G Sbjct: 223 FYLVAGEWSVGRKRCHFNFHA-DSSISRTHALIRVGALTPEQLRDPSTRPTLELVDKNSRFGSFVNQEQI--FGTRILRHGDQISFGAKKTVLRVRYQVFVLVASRIQRANRVQVNDTCQRLGMHLVAAESKDATHCIMDPGRIVATVKVLWALVYNQPVVCTPWI-YAILNRSSLPEPLPRCEEFLPSDPLVPSVESNYLPNSLRKSLFQGYAVVFLTPQSMQELIPAMG 449
BLAST of NO03G02090 vs. NCBI_GenBank
Match: XP_006127557.1 (PREDICTED: nibrin [Pelodiscus sinensis]) HSP 1 Score: 111.3 bits (277), Expect = 1.400e-20 Identity = 71/230 (30.87%), Postives = 126/230 (54.78%), Query Frame = 0 Query: 40 KPYYHLVAGDFVVGRKNCDIIYNKYDTTISRQHARITVLPLQPEEVIAVGTAQTIQVTDLGSRYHTLVNDVQLPPQATHILRSGDVLTFGRYDTKARIWHKPLVLCLSRVSATTKQTLKEAAAKAGAHIVDKWRSTCTHLIVGKTATATTKVCLAVVNSRPVVDVKWLMQGVLGRSSVGVSLPEPAKYLPDWSSVAMVRD-----LNKTRNSLFGELLFLYVAADETEEL 265 +PY LV ++VVGRKNC I+ D +ISR HA +TV +P A+ T + + D S+Y T VN +L + L+SGD + FG +++K R+ + PL++C S + A+ K L +A + G +V+ W CTHL++ + T K A++ +RP++ ++ ++ + S LP+ + P A+ + + + RN++FG FL+++A + ++L Sbjct: 6 EPYRLLVGTEYVVGRKNCSILIQD-DQSISRTHAVLTVTHPEPNLSQAL-TVPELVIKDT-SKYGTFVNGEKLLNGTSRTLKSGDRVNFGVFESKFRVEYDPLIVCSSCLEASGKTALNQAILQLGGIVVNDWSKECTHLVM-ISVKVTVKTICALICNRPIIKPEYFVECIQAIQS-KQQLPKLESFYPPVDEPAIGTEKLDLSMRQERNTIFGGKTFLFLSAKQHKKL 230
BLAST of NO03G02090 vs. NCBI_GenBank
Match: XP_017557521.1 (PREDICTED: nibrin isoform X1 [Pygocentrus nattereri]) HSP 1 Score: 107.1 bits (266), Expect = 2.700e-19 Identity = 75/231 (32.47%), Postives = 116/231 (50.22%), Query Frame = 0 Query: 42 YYHLVAGDFVVGRKNCDIIYNKYDTTISRQHARITVLPLQPEEVIAVGTAQTIQVTDLGSRYHTLVNDVQLPPQATHILRSGDVLTFGRYDTKARIWHKPLVLCLSRVSATTKQTLKEAAAKAGAHIVDKWRSTCTHLIVGKTATATTKVCLAVVNSRPVVDVKW---LMQGVLGRSSVGVSLPEPAKYLPDWSSVAMVR---DL--NKTRNSLFGELLFLYVAADETEEL 265 +Y L ++VVGRKNCDI+ D +ISR HA++TV T QT+ + D S+Y T +ND QL +T LR GD +TFG + +K R+ +V+C S V K L +A G +V W CTHL++ T T K A++ RP+V ++ L Q V + + P+ + P+ ++ + DL R SLF + F+++ A + + L Sbjct: 14 FYLLPGKEYVVGRKNCDILLAN-DQSISRVHAKLTV------------TEQTVTLKD-SSKYGTFINDEQLAAGSTKTLRGGDRVTFGVFQSKFRLELNSVVVCSSCVDNEGKLALSQAVQSVGGRLVSSWSQDCTHLVM-PTVKVTVKTICALLCCRPIVKPEFFTELSQAVQRKE----TFPKSENFKPEMDEPSLAKQEVDLGPRPERKSLFKDKTFVFLNAKQMKRL 225
BLAST of NO03G02090 vs. NCBI_GenBank
Match: XP_017557522.1 (PREDICTED: nibrin isoform X2 [Pygocentrus nattereri]) HSP 1 Score: 107.1 bits (266), Expect = 2.700e-19 Identity = 75/231 (32.47%), Postives = 116/231 (50.22%), Query Frame = 0 Query: 42 YYHLVAGDFVVGRKNCDIIYNKYDTTISRQHARITVLPLQPEEVIAVGTAQTIQVTDLGSRYHTLVNDVQLPPQATHILRSGDVLTFGRYDTKARIWHKPLVLCLSRVSATTKQTLKEAAAKAGAHIVDKWRSTCTHLIVGKTATATTKVCLAVVNSRPVVDVKW---LMQGVLGRSSVGVSLPEPAKYLPDWSSVAMVR---DL--NKTRNSLFGELLFLYVAADETEEL 265 +Y L ++VVGRKNCDI+ D +ISR HA++TV T QT+ + D S+Y T +ND QL +T LR GD +TFG + +K R+ +V+C S V K L +A G +V W CTHL++ T T K A++ RP+V ++ L Q V + + P+ + P+ ++ + DL R SLF + F+++ A + + L Sbjct: 14 FYLLPGKEYVVGRKNCDILLAN-DQSISRVHAKLTV------------TEQTVTLKD-SSKYGTFINDEQLAAGSTKTLRGGDRVTFGVFQSKFRLELNSVVVCSSCVDNEGKLALSQAVQSVGGRLVSSWSQDCTHLVM-PTVKVTVKTICALLCCRPIVKPEFFTELSQAVQRKE----TFPKSENFKPEMDEPSLAKQEVDLGPRPERKSLFKDKTFVFLNAKQMKRL 225
BLAST of NO03G02090 vs. NCBI_GenBank
Match: XP_010734343.2 (PREDICTED: nibrin [Larimichthys crocea] >KKF32646.1 Nibrin [Larimichthys crocea]) HSP 1 Score: 105.1 bits (261), Expect = 1.000e-18 Identity = 75/236 (31.78%), Postives = 122/236 (51.69%), Query Frame = 0 Query: 42 YYHLVAGDFVVGRKNCDIIYNKYDTTISRQHARITVLPLQPEEVIAVGTAQTIQVTDLGSRYHTLVNDVQLPPQATHILRSGDVLTFGRYDTKARIWHKPLVLCLSRVSATTKQTLKEAAAKAGAHIVDKWRSTCTHLIVGKTATATTKVCLAVVNSRPVVDVKWLMQGVLGRSS-VGVSLPEPAKYLPDWSSVAMVR-DLN----KTRNSLFGELLFLYVAADETEELVKDAGAG 272 +Y L + DFVVGRKNCDI+ D +ISR HA +T T QT+ + D S+Y T VN QL L+SGD +TFG +++K + H+ V+C S + K +L +A G +V+ W CTHL++ TA T K A++ RP+V ++ + LG+++ + P+ ++P+ ++ + D+N R LF F++++A + + L G G Sbjct: 14 HYLLSSKDFVVGRKNCDILLPS-DQSISRAHAHLT------------ATDQTLTLKDT-SKYGTFVNGQQLTANTPVNLKSGDNVTFGVFESKFSVEHQKPVVCSSCLDNDGKTSLTQALLAVGGKLVNTWTQDCTHLVM-PTAKVTIKTICALLCCRPIVKPEFFSE--LGKAAQQKLPPPKAESFIPEIDEPSLSKEDVNLGAIPVRKQLFAGKTFIFLSAKQLKRLSAAVGFG 232
BLAST of NO03G02090 vs. NCBI_GenBank
Match: XP_006008581.1 (PREDICTED: nibrin isoform X1 [Latimeria chalumnae]) HSP 1 Score: 104.8 bits (260), Expect = 1.300e-18 Identity = 70/241 (29.05%), Postives = 126/241 (52.28%), Query Frame = 0 Query: 31 TASGKKKNKKPYYHLVAGDFVVGRKNCDIIYNKYDTTISRQHARITVLPLQPEEVIAVGTAQTIQVTDL--GSRYHTLVNDVQLPPQATHILRSGDVLTFGRYDTKARIWHKPLVLCLSRVSATTKQTLKEAAAKAGAHIVDKWRSTCTHLIVGKTATATTKVCLAVVNSRPVVDVKWLMQGVLGRSSVGVSLPEPAKYL-----PDWSSVAMVRDLNKTRNSLFGELLFLYVAADETEEL 265 TA+G ++PY LV +++VGRKNC I+ + D +ISR HA +TV V+ +G A I V ++ S+Y T VN+ ++ ++ L S + +TFG +++K R+ ++P+++C S + K TL + + G H+V+ W CTHLI+ + T K A++ RP++ +++ + +L LP + P+ A+ R S+F F+++ A + + L Sbjct: 8 TAAG----EEPYQLLVGVEYIVGRKNCTILLSD-DQSISRAHAVLTV----SHPVVNLGHAARIPVLNIKDTSKYGTFVNEERMQRESPRSLNSRERVTFGVFESKFRVEYEPMIVCSSCLDGPGKVTLNQVVGQLGGHVVNSWMEDCTHLIM-PSVKVTVKTICALICCRPIIKLEYFTE-LLKAIQSKQHLPTLESFFPPVDEPNIQPEALDLTARPERKSIFRGKTFIFLNAKQHKRL 237
BLAST of NO03G02090 vs. NCBI_GenBank
Match: XP_008106617.1 (PREDICTED: nibrin isoform X1 [Anolis carolinensis] >XP_016848307.1 PREDICTED: nibrin isoform X1 [Anolis carolinensis]) HSP 1 Score: 104.8 bits (260), Expect = 1.300e-18 Identity = 63/228 (27.63%), Postives = 125/228 (54.82%), Query Frame = 0 Query: 43 YHLVAG-DFVVGRKNCDIIYNKYDTTISRQHARITVLPLQPEEVIAVGTAQTIQVTDLGSRYHTLVNDVQLPPQATHILRSGDVLTFGRYDTKARIWHKPLVLCLSRVSATTKQTLKEAAAKAGAHIVDKWRSTCTHLIVGKTATATTKVCLAVVNSRPVVDVKWLMQGVLGRSSVGVSLPEPAKYLPDWSSVAMVRD-----LNKTRNSLFGELLFLYVAADETEEL 265 YHL+ G ++VVGRKNC I+ D +ISR HA ++V QP+ +++ ++ + S+Y T VN+ ++ L+SGD +TFG +++K R+ ++PLV+C S + + K + + + G H+V++W+ CTHL++ + T K A++ RP+V ++ + ++ + P P + P + ++ + + R ++F + F+++ A + +L Sbjct: 16 YHLLVGVEYVVGRKNCGILIQD-DQSISRSHAVLSV--SQPQVMLSQTSSLPVLTLKDLSKYGTFVNEEKITNGIPRTLKSGDRVTFGVFESKYRVEYEPLVVCSSCLDVSQKSLINKNIHQLGGHVVNEWKEECTHLVM-VSVKITVKTICALICGRPIVKPEYFDE-LVKAVEAQKNFPIPESFYPPINEPSIKNEKIDLTICPRRKTVFSGITFVFLTAKQHAKL 238
BLAST of NO03G02090 vs. NCBI_GenBank
Match: XP_018431775.1 (PREDICTED: nibrin [Nanorana parkeri]) HSP 1 Score: 104.4 bits (259), Expect = 1.700e-18 Identity = 70/230 (30.43%), Postives = 118/230 (51.30%), Query Frame = 0 Query: 42 YYHLVAGDFVVGRKNCDIIYNKYDTTISRQHARITVLPLQPEEVIAVGTAQTIQVTDL--GSRYHTLVNDVQLPPQATHILRSGDVLTFGRYDTKARIWHKPLVLCLSRVSATTKQTLKEAAAKAGAHIVDKWRSTCTHLIVGKTATATTKVCLAVVNSRPVVDVKWLMQGVLGRSSVGVSLPEPAKYLPDWSSVAMVRDL-----NKTRNSLFGELLFLYVAADETEEL 265 YY L D+VVGRKNC I+ D +ISR HA +V + ++G I V L S+Y T VN ++ + L SGD +TFG Y++K R+ ++ LV C S +S++ K +L +A G HIV+ W THL++ + T K A++ + +V ++ + ++ +LP ++P ++ D N R ++F + LFL++ A + ++L Sbjct: 14 YYFLSGTDYVVGRKNCSILIED-DQSISRSHASFSV----SHPLSSLGHPDVIPVLSLKESSKYGTFVNGERMENAISRNLNSGDKITFGVYNSKFRVMYESLVTCSSCLSSSEKSSLNQAMQLLGGHIVNNWTEKSTHLVM-TSVKVTIKTICALICCKSIVTPEYFSE-MIKAIKEKQALPALTSFIPIIDEPSLQTDSLDFSENGKRKTIFKDKLFLFLTAKQHKKL 236
BLAST of NO03G02090 vs. NCBI_GenBank
Match: XP_022529955.1 (nibrin [Astyanax mexicanus]) HSP 1 Score: 104.4 bits (259), Expect = 1.700e-18 Identity = 78/246 (31.71%), Postives = 121/246 (49.19%), Query Frame = 0 Query: 42 YYHLVAGDFVVGRKNCDIIYNKYDTTISRQHARITVLPLQPEEVIAVGTAQTIQVTDLGSRYHTLVNDVQLPPQATHILRSGDVLTFGRYDTKARIWHKPLVLCLSRVSATTKQTLKEAAAKAGAHIVDKWRSTCTHLIVGKTATATTKVCLAVVNSRPVVDVKW---LMQGVLGRSSVGVSLPEPAKYLPDWSSVAMVR---DL--NKTRNSLFGELLFLYVAADETEELVK--DAGAGVEKVYE 278 +Y L ++VVGRKNCDI+ D +ISR HA++TV QT+ + D S+Y T VND QL +T + GD LTFG + +K R+ +V+C S V K L +A G +V+ W CTHL++ T T K A++ RP+V ++ L + V + V LP + P+ ++ + DL R SLF + F+++ + + L + G GV ++ E Sbjct: 14 FYLLPGKEYVVGRKNCDILLAN-DQSISRVHAQLTV------------ADQTVTLKD-SSKYGTFVNDEQLTTNSTKTVHDGDRLTFGVFQSKFRLKLNSMVVCSSCVDNEGKAALSKAVQSVGGRLVNSWSPDCTHLVM-PTVKVTIKTICALLCCRPIVKAEFFTELSRAVQRKEKV---LPAAQNFKPEIDEPSLTKQDVDLGPRPERKSLFRDKTFVFLNVKQMKRLSQAITCGGGVTQLLE 241 The following BLAST results are available for this feature:
BLAST of NO03G02090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G02090 ID=NO03G02090|Name=NO03G02090|organism=Nannochloropsis oceanica|type=gene|length=2460bpback to top protein sequence of NO03G02090.1 >NO03G02090.1-protein ID=NO03G02090.1-protein|Name=NO03G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=820bpback to top Synonyms
Publications
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