NO03G02080, NO03G02080 (gene) Nannochloropsis oceanica

Overview
NameNO03G02080
Unique NameNO03G02080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length702
Alignment locationchr3:622189..622890 -

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Properties
Property NameValue
DescriptionProtein mis18-alpha
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:622189..622890 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR034752Mis18
IPR004910Yippee/Mis18
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
BLAST of NO03G02080 vs. NCBI_GenBank
Match: EWM29646.1 (protein mis18-alpha [Nannochloropsis gaditana])

HSP 1 Score: 244.6 bits (623), Expect = 3.100e-61
Identity = 132/200 (66.00%), Postives = 140/200 (70.00%), Query Frame = 0
Query:   43 CRRIVGDSLGLTSADEDLRHITLHGACGIVRGPCPRTSEEGKDLGSTFHELFCEGCNALLGKVYLTTPAPLDGARNLFTLSTDALESFELGNYDHTCELPAHLMPTPPAASREGAEIXXXXXXXXXXXHAAMQLELTKVQNMMLVFHDRISSLERALKEATIGAGATDWERKGGGDR---------ENVGAVGNKFKRKK 234
            CRRIVGDSLGL+SADE+LRHITL GACGIVRGPC RTSEEG D GSTFHELFCEGC+ LLGKVYLTTP  LDGARNLFTLSTDALESFELG YDH CE+P   M  P  +S  G                AMQ+EL KVQNMMLVFHDRIS LERALK  T+GA      R GGG R         EN  A G  FKR+K
Sbjct:   34 CRRIVGDSLGLSSADEELRHITLRGACGIVRGPCTRTSEEGNDRGSTFHELFCEGCSTLLGKVYLTTPPRLDGARNLFTLSTDALESFELGTYDHVCEVPQPAMAAPIPSSECGES---------KTSIEAMQMELVKVQNMMLVFHDRISGLERALKTGTVGA------RTGGGTRRGAWGVDGTENTAAGGPTFKRRK 218          
BLAST of NO03G02080 vs. NCBI_GenBank
Match: GAQ89502.1 (hypothetical protein KFL_005300060 [Klebsormidium nitens])

HSP 1 Score: 104.4 bits (259), Expect = 5.000e-19
Identity = 69/180 (38.33%), Postives = 96/180 (53.33%), Query Frame = 0
Query:   43 CRRIVGDSLGLTSADEDLRHITLHGACGIV-RGPCPRTSEEGKDLGSTFHELFCEGCNALLGKVYLTTPAPLDGARNLFTLSTDALESFELGNYDHTCELPAHLMPTPPA---ASREGAEIXXXXXXXXXXXHAAMQLELTKVQNMMLVFHDRISSLERALKEATIGAGATDW-ERKGGG 218
            C  I+GDSL L + DE+LR ITL GA  IV     PRT EEGK  GSTF  + C+ C   +G V++TTP  LDG R+L +L    + S+ LG+ +     P +  P PPA        A+I              M+ EL KV+NM+L+  +R+  LE A ++    AG  +  +R+G G
Sbjct:   17 CNAILGDSLSLVATDEELRTITLRGASSIVILEEQPRTYEEGKAAGSTFLTIKCKSCRTDVGGVFITTPRNLDGIRDLLSLDAQKISSYALGSPEVLASAP-NDAPAPPAILDPFTSSAKI------------LRMESELLKVENMILLHSERLDQLEGAGRDLPSTAGDEETNDRRGEG 183          
BLAST of NO03G02080 vs. NCBI_GenBank
Match: OWZ01126.1 (hypothetical protein PHMEG_00027549 [Phytophthora megakarya])

HSP 1 Score: 98.2 bits (243), Expect = 3.600e-17
Identity = 53/154 (34.42%), Postives = 79/154 (51.30%), Query Frame = 0
Query:   43 CRRIVGDSLGLTSADEDLRHITLHGACGIVRGPCPRTSEEGKDLGSTFHELFCEGCNALLGKVYLTTPAPLDGARNLFTLSTDALESFELGNYDHTCELPAHLMPTPPAASREGAEIXXXXXXXXXXXHAAMQLELTKVQNMMLVFHDRISSLE 197
            CR I GDS     + E L  ITL     +   P  +T+  G D GS+++EL C  C  +LG+ YLTTP  LDG R+LF+ ST+A+ S+ LG      E     M  P AA  +  +             AA++ E+ KV+ +++   +R++ LE
Sbjct:   81 CRAIFGDSYAFVCSTEQLWLITLSHVTNVTLSPEVQTANRGLDAGSSYYELLCHNCQTVLGRKYLTTPVALDGIRDLFSFSTEAITSYTLGEPMQQTEGETQKMKQPVAACHDTMQ----KLATDRDEVAALRREMEKVKGLLVTVDERLAHLE 230          
BLAST of NO03G02080 vs. NCBI_GenBank
Match: XP_009531484.1 (hypothetical protein PHYSODRAFT_511864 [Phytophthora sojae] >EGZ14055.1 hypothetical protein PHYSODRAFT_511864 [Phytophthora sojae])

HSP 1 Score: 97.8 bits (242), Expect = 4.700e-17
Identity = 56/156 (35.90%), Postives = 80/156 (51.28%), Query Frame = 0
Query:   43 CRRIVGDSLGLTSADEDLRHITLHGACGIVRGPCPRTSEEGKDLGSTFHELFCEGCNALLGKVYLTTPAPLDGARNLFTLSTDALESFELGNYDHTCELPAHLMPTPPAASREGAEIXXXXXXXXXXXHAAMQLELTKVQNMMLVFHDRISSLERA 199
            CR I GDS     + EDL  +TL     +   P  +T+  G D GS+F+EL C  C A+LG+ YLTTP  LDG R+LF+ ST+A+ S+ LG+     E  A       AA+                  A ++ E+ KV+ +M+   DR++ LE A
Sbjct:  104 CRSIFGDSYAFVCSTEDLWLVTLSHVTNVALSPEVQTANTGLDAGSSFYELLCHNCQAVLGRKYLTTPVALDGIRDLFSFSTEAITSYTLGDPMQQSEDAADQQMLQAAAA---CNDTMQKLAADRSELARLKDEMEKVKGLMVTVDDRLAHLEGA 256          
BLAST of NO03G02080 vs. NCBI_GenBank
Match: EXX55110.1 (hypothetical protein RirG_228310 [Rhizophagus irregularis DAOM 197198w] >EXX55111.1 hypothetical protein RirG_228310 [Rhizophagus irregularis DAOM 197198w] >GBC42343.1 Kinetochore protein Mis18 [Rhizophagus irregularis DAOM 181602] >PKC72345.1 hypothetical protein RhiirA1_411947 [Rhizophagus irregularis] >PKK71569.1 hypothetical protein RhiirC2_744413 [Rhizophagus irregularis] >PKY40564.1 hypothetical protein RhiirA4_394851 [Rhizophagus irregularis] >POG65633.1 hypothetical protein GLOIN_2v1663989 [Rhizophagus irregularis DAOM 181602=DAOM 197198])

HSP 1 Score: 95.5 bits (236), Expect = 2.300e-16
Identity = 52/158 (32.91%), Postives = 83/158 (52.53%), Query Frame = 0
Query:   43 CRRIVGDSLGLTSADEDLRHITLHGACGIVR-GPCPRTSEEGKDLGSTFHELFCEGCNALLGKVYLTTPAPLDGARNLFTLSTDALESFELGNYDHTCELPAHLMPTPPAASREGAEIXXXXXXXXXXXHAAMQLELTKVQNMMLVFHDRISSLERAL 200
            CR IVGDS    +AD DL  + L+     +R G     S EG D+GST+  ++C GCN  LGKV+ TTP  LD  R+L+TL+ D +  ++LG++      P  +   P +  +                    Q+ + K+++M+L+ ++RI++LE  L
Sbjct:   34 CRLIVGDSFAFVTADRDLNSVVLYAKPHNIRVGTDLLWSREGIDIGSTYIMIYCNGCNLTLGKVWRTTPRKLDYIRDLYTLNLDCVMIYQLGDFIDPNSTPTDIHTLPSSRMQ--------------------QISINKLKDMILILNERITTLEHTL 171          
BLAST of NO03G02080 vs. NCBI_GenBank
Match: PKC15602.1 (hypothetical protein RhiirA5_348893 [Rhizophagus irregularis] >PKY16443.1 hypothetical protein RhiirB3_402896 [Rhizophagus irregularis])

HSP 1 Score: 95.5 bits (236), Expect = 2.300e-16
Identity = 52/158 (32.91%), Postives = 83/158 (52.53%), Query Frame = 0
Query:   43 CRRIVGDSLGLTSADEDLRHITLHGACGIVR-GPCPRTSEEGKDLGSTFHELFCEGCNALLGKVYLTTPAPLDGARNLFTLSTDALESFELGNYDHTCELPAHLMPTPPAASREGAEIXXXXXXXXXXXHAAMQLELTKVQNMMLVFHDRISSLERAL 200
            CR IVGDS    +AD DL  + L+     +R G     S EG D+GST+  ++C GCN  LGKV+ TTP  LD  R+L+TL+ D +  ++LG++      P  +   P +  +                    Q+ + K+++M+L+ ++RI++LE  L
Sbjct:   34 CRLIVGDSFAFVTADRDLNSVVLYAKPHNIRVGTDLLWSREGIDIGSTYIMIYCNGCNLTLGKVWRTTPRKLDYIRDLYTLNLDCVMIYQLGDFIDPNSTPTDIHTLPSSRMQ--------------------QISINKLKDMILILNERITTLEHTL 171          
BLAST of NO03G02080 vs. NCBI_GenBank
Match: KUF78328.1 (Kinetochore protein mis18 [Phytophthora nicotianae] >KUF87825.1 hypothetical protein AM588_10001614 [Phytophthora nicotianae])

HSP 1 Score: 95.1 bits (235), Expect = 3.000e-16
Identity = 59/173 (34.10%), Postives = 81/173 (46.82%), Query Frame = 0
Query:   43 CRRIVGDSLGLTSADEDLRHITLHGACGIVRGPCPRTSEEGKDLGSTFHELFCEGCNALLGKVYLTTPAPLDGARNLFTLSTDALESFELGNYDHTCELPAHLMPTPPAASREGAEIXXXXXXXXXXXHAAMQL-------------ELTKVQNMMLVFHDRISSLERALKEA 203
            CR I GDS     + E L  +TL     +   P  +T+  G D GS+++EL C  C A+LG+ YLTTP  LDG R+LF+ ST+A+ S+ LG+               P    EG E            H AMQ              EL KV+ +M+   DR++ LE A  E+
Sbjct:  100 CRSIFGDSYAFVCSTEQLWLVTLSHVTNVALAPEVQTANTGLDAGSSYYELLCHNCQAVLGRKYLTTPVVLDGIRDLFSFSTEAITSYTLGD---------------PMQKGEGGE-DEWMKQAAVVCHEAMQKLAVDRSEVARLRDELEKVKGLMVTVDDRLAHLEGAAPES 256          
BLAST of NO03G02080 vs. NCBI_GenBank
Match: ETK84723.1 (hypothetical protein L915_10340 [Phytophthora parasitica])

HSP 1 Score: 94.4 bits (233), Expect = 5.100e-16
Identity = 58/173 (33.53%), Postives = 81/173 (46.82%), Query Frame = 0
Query:   43 CRRIVGDSLGLTSADEDLRHITLHGACGIVRGPCPRTSEEGKDLGSTFHELFCEGCNALLGKVYLTTPAPLDGARNLFTLSTDALESFELGNYDHTCELPAHLMPTPPAASREGAEIXXXXXXXXXXXHAAMQL-------------ELTKVQNMMLVFHDRISSLERALKEA 203
            CR I GDS     + E L  +TL     +   P  +T+  G D GS+++EL C  C A+LG+ YLTTP  LDG R+LF+ ST+A+ S+ LG+               P    EG E            H AMQ              E+ KV+ +M+   DR++ LE A  E+
Sbjct:  145 CRSIFGDSYAFVCSTEQLWLVTLSHVTNVALAPEVQTANTGLDAGSSYYELLCHNCQAVLGRKYLTTPVVLDGIRDLFSFSTEAITSYTLGD---------------PMQKGEGGE-DEWMKQAAVVCHEAMQKLAVDRSEVARLRDEMEKVKGLMVTVDDRLAHLEGAAPES 301          
BLAST of NO03G02080 vs. NCBI_GenBank
Match: XP_008893620.1 (hypothetical protein PPTG_01977 [Phytophthora parasitica INRA-310] >ETL38156.1 hypothetical protein L916_10240 [Phytophthora parasitica] >ETL91262.1 hypothetical protein L917_10174 [Phytophthora parasitica] >ETN21903.1 hypothetical protein PPTG_01977 [Phytophthora parasitica INRA-310] >ETO73366.1 hypothetical protein F444_10681 [Phytophthora parasitica P1976] >ETP14549.1 hypothetical protein F441_10523 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 94.4 bits (233), Expect = 5.100e-16
Identity = 58/173 (33.53%), Postives = 81/173 (46.82%), Query Frame = 0
Query:   43 CRRIVGDSLGLTSADEDLRHITLHGACGIVRGPCPRTSEEGKDLGSTFHELFCEGCNALLGKVYLTTPAPLDGARNLFTLSTDALESFELGNYDHTCELPAHLMPTPPAASREGAEIXXXXXXXXXXXHAAMQL-------------ELTKVQNMMLVFHDRISSLERALKEA 203
            CR I GDS     + E L  +TL     +   P  +T+  G D GS+++EL C  C A+LG+ YLTTP  LDG R+LF+ ST+A+ S+ LG+               P    EG E            H AMQ              E+ KV+ +M+   DR++ LE A  E+
Sbjct:  100 CRSIFGDSYAFVCSTEQLWLVTLSHVTNVALAPEVQTANTGLDAGSSYYELLCHNCQAVLGRKYLTTPVVLDGIRDLFSFSTEAITSYTLGD---------------PMQKGEGGE-DEWMKQAAVVCHEAMQKLAVDRSEVARLRDEMEKVKGLMVTVDDRLAHLEGAAPES 256          
BLAST of NO03G02080 vs. NCBI_GenBank
Match: ETP42629.1 (hypothetical protein F442_10476 [Phytophthora parasitica P10297])

HSP 1 Score: 94.4 bits (233), Expect = 5.100e-16
Identity = 58/173 (33.53%), Postives = 81/173 (46.82%), Query Frame = 0
Query:   43 CRRIVGDSLGLTSADEDLRHITLHGACGIVRGPCPRTSEEGKDLGSTFHELFCEGCNALLGKVYLTTPAPLDGARNLFTLSTDALESFELGNYDHTCELPAHLMPTPPAASREGAEIXXXXXXXXXXXHAAMQL-------------ELTKVQNMMLVFHDRISSLERALKEA 203
            CR I GDS     + E L  +TL     +   P  +T+  G D GS+++EL C  C A+LG+ YLTTP  LDG R+LF+ ST+A+ S+ LG+               P    EG E            H AMQ              E+ KV+ +M+   DR++ LE A  E+
Sbjct:  100 CRSIFGDSYAFVCSTEQLWLVTLSHVTNVALAPEVQTANTGLDAGSSYYELLCHNCQAVLGRKYLTTPVVLDGIRDLFSFSTEAITSYTLGD---------------PMQKGEGGE-DEWMKQAAVVCHEAMQKLAVDRSEVARLRDEMEKVKGLMVTVDDRLAHLEGAAPES 256          
The following BLAST results are available for this feature:
BLAST of NO03G02080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29646.13.100e-6166.00protein mis18-alpha [Nannochloropsis gaditana][more]
GAQ89502.15.000e-1938.33hypothetical protein KFL_005300060 [Klebsormidium ... [more]
OWZ01126.13.600e-1734.42hypothetical protein PHMEG_00027549 [Phytophthora ... [more]
XP_009531484.14.700e-1735.90hypothetical protein PHYSODRAFT_511864 [Phytophtho... [more]
EXX55110.12.300e-1632.91hypothetical protein RirG_228310 [Rhizophagus irre... [more]
PKC15602.12.300e-1632.91hypothetical protein RhiirA5_348893 [Rhizophagus i... [more]
KUF78328.13.000e-1634.10Kinetochore protein mis18 [Phytophthora nicotianae... [more]
ETK84723.15.100e-1633.53hypothetical protein L915_10340 [Phytophthora para... [more]
XP_008893620.15.100e-1633.53hypothetical protein PPTG_01977 [Phytophthora para... [more]
ETP42629.15.100e-1633.53hypothetical protein F442_10476 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005691NSK005691Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02080.1NO03G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522201gene_1394Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100050g43gene981Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02080.1NO03G02080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02080 ID=NO03G02080|Name=NO03G02080|organism=Nannochloropsis oceanica|type=gene|length=702bp
ATGGCGCTGCCACCACCGCTAGCAGTCCTACCTGCTGCTGTTACTGCCAC
AACTACTGCTGCTGCTGCCGCTGCTGCTTCTTCCACAGCCGCCGCTTCTG
GGAGCATTGTCTTTCTGTGTGCTGCGTGTCGGCGAATCGTGGGGGACTCT
TTGGGCTTGACCAGCGCGGACGAGGACTTGCGGCACATAACGCTGCACGG
TGCCTGCGGCATCGTTCGGGGGCCCTGTCCGCGCACCTCGGAGGAAGGGA
AAGATTTGGGATCGACGTTTCACGAGCTGTTTTGCGAGGGCTGCAATGCA
TTGTTGGGCAAAGTGTATTTGACAACCCCTGCGCCCTTAGACGGAGCCCG
CAATCTCTTTACGTTATCCACAGACGCCCTCGAGAGCTTCGAGCTAGGAA
ATTATGATCACACGTGCGAGCTTCCCGCGCACCTGATGCCGACCCCTCCA
GCAGCGTCGAGGGAGGGAGCAGAGATTGCAGCGGGAGGAGGGGGGGAGGG
AGGGCCTCCCCACGCGGCTATGCAGTTGGAGCTGACAAAAGTACAGAACA
TGATGTTGGTATTTCACGACCGTATCTCGAGCTTGGAACGGGCATTGAAG
GAGGCAACAATCGGAGCAGGGGCTACAGATTGGGAAAGGAAAGGAGGTGG
CGACCGAGAGAATGTGGGGGCAGTGGGAAATAAATTCAAAAGGAAGAAGT
AG
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protein sequence of NO03G02080.1

>NO03G02080.1-protein ID=NO03G02080.1-protein|Name=NO03G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MALPPPLAVLPAAVTATTTAAAAAAASSTAAASGSIVFLCAACRRIVGDS
LGLTSADEDLRHITLHGACGIVRGPCPRTSEEGKDLGSTFHELFCEGCNA
LLGKVYLTTPAPLDGARNLFTLSTDALESFELGNYDHTCELPAHLMPTPP
AASREGAEIAAGGGGEGGPPHAAMQLELTKVQNMMLVFHDRISSLERALK
EATIGAGATDWERKGGGDRENVGAVGNKFKRKK*
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Synonyms
Publications