NO03G02040, NO03G02040 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G02040 vs. NCBI_GenBank
Match: EWM29623.1 (hypothetical protein Naga_100050g39 [Nannochloropsis gaditana]) HSP 1 Score: 323.2 bits (827), Expect = 7.200e-85 Identity = 173/234 (73.93%), Postives = 195/234 (83.33%), Query Frame = 0 Query: 17 DAFTMKAGTHSSPTPHRHRRTIS-HGTRKDALLQTSFGALALGFAASGVVMPSPRRAQ-AFPFGGGEDVTGALDEVARARQKVEEVLSGLKSKQLKGGKEDSATIVRYMDAHYKPLQEKMLVLAPKLKLADEEKQKRAELLPLLLKGHLAELAAAARTGVASEQLQEMEEVAESVDEFLALAKEGGK-EVKSYLGPAPEFDVTREYGPFACEFWGKVRLPESNVCVWPDELGAK 248 +A+TMKAG S R + S +R+DAL S A+ LGFAASG+++ PRR + AFPFGG DV G LD+VARARQKVEEVLSGLKSKQLKGGK+DSAT+VRYMDAHYKPLQEKM+ LAPK+K+ DEEKQKR E LPLLLKGHL ELAAAARTGVA+EQLQEMEEVAESVDEFLALA+E G+ +V+ YLGPAPEFDV REYGPFACEFWGKVRLPESNVCVWPDE+ K Sbjct: 38 NAWTMKAGMSDSQGRCRIPPSASAPRSRRDALCIGSIPAVTLGFAASGLILQYPRRTEAAFPFGGDGDVAGQLDDVARARQKVEEVLSGLKSKQLKGGKDDSATVVRYMDAHYKPLQEKMVTLAPKMKVGDEEKQKRLETLPLLLKGHLFELAAAARTGVAAEQLQEMEEVAESVDEFLALARESGRYQVRDYLGPAPEFDVKREYGPFACEFWGKVRLPESNVCVWPDEVEKK 271
BLAST of NO03G02040 vs. NCBI_GenBank
Match: CEM37397.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 136.7 bits (343), Expect = 9.600e-29 Identity = 96/236 (40.68%), Postives = 131/236 (55.51%), Query Frame = 0 Query: 14 SSADAFTMKAGTHSSPTPHRHRRTISHGTRK------DALLQTSFGALALG--FAASGVVMPSPRRAQAFPFGGGED--VTGALDEVARARQKVEEVLSGLKSKQLKGGKEDSATIVRYMDAHYKPLQEKMLVLAPKLKLADEEKQKRAELLPLLLKGHLAELAAAARTGVASEQLQEMEEVAESVDEFLALAKEGGKEVKSYLGPAPEFDVTRE-YGPFACEFWGKVRLPESNVC 239 SS DAF + +H H RR S K L + ++ALG A S + PSP A + PF E+ + A+ E+A R V ++L LK+ +LKGG DS T+ ++ +Y+P+QEKM L+ K+ L D K +R LLPLLLKGHLAEL A + QL+E+EEV E+++EFL LA K + P+F+ ++ YG F CEFWGK RLPESN C Sbjct: 16 SSHDAFISPSASHMG-LRHALRRAPSSSLLKMTADESSTLPRRRMLSIALGSLVAPSLLASPSPSSAISLPFFESEEQKIERAVGEIADYRPYVLKILDKLKTGKLKGGTYDSGTVANFLGIYYRPMQEKMETLSAKIDLEDTTKTERLRLLPLLLKGHLAELREAVISQRPERQLEEVEEVGETLNEFLTLA--SAKYTIPPIPVPPDFNPEKDYYGIFGCEFWGKRRLPESNRC 248
BLAST of NO03G02040 vs. NCBI_GenBank
Match: CBJ31333.1 (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 114.4 bits (285), Expect = 5.100e-22 Identity = 75/201 (37.31%), Postives = 113/201 (56.22%), Query Frame = 0 Query: 41 GTRKDALLQTSFGALALGFAASGVVMPSPRRAQAFPFGGGEDVTGALDEVARA---RQKVEEVLSGLKSKQLKGGKEDSATIVRYMDAHYKPLQEKMLVLAPKLKLADEEKQKRAELLPLLLKGHLAELAAAARTGVASEQLQEMEEVAESVDEFLALAKEGGKEVKSYLGPAPEFDVTREYGPFACEFWGKVRLPESNVC 239 GT + A L+++ G G AA V+ P AF G L+EV + + V ++ LK+ LKGG EDS ++R ++ + +P+QE+ML +AP ++LA E ++R +LLPL++KGHL EL AA T A EQL+E++ E++DEF+ALAK + AP+ D + G F C F+G R S+ C Sbjct: 63 GTSRAAFLRSALG----GAAALATVVARPTETPAFALPFGPKDNPELEEVVKVAGYSRFVNKLEQDLKAGALKGGPEDSVVVLRVLEVYLEPMQEEMLKVAPLMQLAGRENRERVKLLPLIMKGHLLELKAACGTKDAKEQLEEVQXXRETLDEFIALAKTRYEIAPLDPEGAPDGD---QLGIFGCSFYGMKRTDGSSRC 256 The following BLAST results are available for this feature:
BLAST of NO03G02040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3 Position : 0 Zoom : x 1
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G02040 ID=NO03G02040|Name=NO03G02040|organism=Nannochloropsis oceanica|type=gene|length=747bpback to top protein sequence of NO03G02040.1 >NO03G02040.1-protein ID=NO03G02040.1-protein|Name=NO03G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=249bpback to top Synonyms
Publications
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