NO03G02000, NO03G02000 (gene) Nannochloropsis oceanica

Overview
NameNO03G02000
Unique NameNO03G02000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1338
Alignment locationchr3:608242..609579 +

Link to JBrowse

Properties
Property NameValue
DescriptionHistone H2A
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:608242..609579 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
GO:0005515protein binding
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007125Histone_core_D
IPR032454Histone_H2A_C
IPR002119Histone_H2A
Homology
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: EWM29644.1 (histone-fold-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 233.0 bits (593), Expect = 5.100e-58
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKA 126
            MAGKGK GRG+GKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKK+
Sbjct:    1 MAGKGKGGRGSGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKS 125
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: EWM21571.1 (histone-fold-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 226.5 bits (576), Expect = 4.700e-56
Identity = 121/128 (94.53%), Postives = 124/128 (96.88%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKK-GVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKATK 128
            MAGKGK+GRG GKK GVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPK+K KK+ K
Sbjct:    1 MAGKGKSGRGGGKKGGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKSGK 128
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: XP_013890509.1 (Histone H2A [Monoraphidium neglectum] >KIY91489.1 Histone H2A [Monoraphidium neglectum])

HSP 1 Score: 201.4 bits (511), Expect = 1.600e-48
Identity = 104/124 (83.87%), Postives = 115/124 (92.74%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKK 125
            M+G+GK    +GKK VSRSSKAGLQFPVGRI+RFLKKGRYA RVG+GAPVYLAAVLEYL AE+LEL+GNAARDNKK RI+PRH+QLA+RNDEEL+KLLGGVTIASGGVLPNIHSVLLPKTK KK
Sbjct:    1 MSGRGKG--KSGKKPVSRSSKAGLQFPVGRIARFLKKGRYATRVGAGAPVYLAAVLEYLAAEVLELSGNAARDNKKNRIVPRHIQLAIRNDEELSKLLGGVTIASGGVLPNIHSVLLPKTKGKK 122
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: CBJ32077.1 (histone H2A isoform 2 [Ectocarpus siliculosus])

HSP 1 Score: 199.9 bits (507), Expect = 4.800e-48
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKK 125
            M+GKGK GR  GKK  +RS+KAGLQFPVGR+ RFLKKG+YA+RVG+GAPVYLAAVLEYLTAE+LELAGNAARDNKK RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIH+VLLPK   KK
Sbjct:    1 MSGKGKGGR--GKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: XP_005643617.1 (histone-fold-containing protein, partial [Coccomyxa subellipsoidea C-169] >EIE19073.1 histone-fold-containing protein, partial [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 199.9 bits (507), Expect = 4.800e-48
Identity = 104/122 (85.25%), Postives = 114/122 (93.44%), Query Frame = 0 
Query:    3 GKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKK 125
            GKGK    +GKK VSRS+KAGLQFPVGRI+R+LKKG+YA+RVG+GAPVYLAAVLEYL AE+LELAGNAARDNKKTRIIPRH+QLAVRNDEEL+KLLG VTIASGGVLPNIHSVLLPKTK KK
Sbjct:    3 GKGK----SGKKQVSRSAKAGLQFPVGRIARYLKKGKYASRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLGNVTIASGGVLPNIHSVLLPKTKGKK 120
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: PSC68321.1 (Histone H2A [Micractinium conductrix] >PSC68329.1 Histone H2A [Micractinium conductrix] >PSC71227.1 Histone H2A [Micractinium conductrix])

HSP 1 Score: 199.9 bits (507), Expect = 4.800e-48
Identity = 103/125 (82.40%), Postives = 115/125 (92.00%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKA 126
            M+G+GK G+ +GKK VS+SSKAGLQFPVGRI+R+LKKGRYA R+G+GAPVYLAAVLEYL AE+LELAGNAARDNKKTRIIPRH+QLAVRNDEEL+KLL GVTIA GGVLPNIHSVLLPK   KKA
Sbjct:    1 MSGRGK-GKSSGKKAVSKSSKAGLQFPVGRIARYLKKGRYAERIGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLAGVTIAEGGVLPNIHSVLLPKKTGKKA 124
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: CBJ48885.1 (histone H2A (ISS) [Ectocarpus siliculosus])

HSP 1 Score: 199.5 bits (506), Expect = 6.200e-48
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKK 125
            M+GKGK GR  GKK  +RS+KAGLQFPVGR+ RFLKKG+YA+RVG+GAPVYLAAVLEYLTAE+LELAGNAARDNKK RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIH+VLLPK   KK
Sbjct:    1 MSGKGKGGR--GKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 122
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: XP_005843094.1 (hypothetical protein CHLNCDRAFT_28450 [Chlorella variabilis] >XP_005843702.1 hypothetical protein CHLNCDRAFT_27894 [Chlorella variabilis] >EFN50992.1 hypothetical protein CHLNCDRAFT_28450 [Chlorella variabilis] >EFN51600.1 hypothetical protein CHLNCDRAFT_27894 [Chlorella variabilis] >PRW20373.1 Histone H2A [Chlorella sorokiniana] >PRW20423.1 Histone H2A [Chlorella sorokiniana] >PRW32875.1 Histone H2A [Chlorella sorokiniana] >PRW32953.1 Histone H2A [Chlorella sorokiniana] >PRW33066.1 Histone H2A [Chlorella sorokiniana] >PRW56948.1 Histone H2A [Chlorella sorokiniana] >PRW56969.1 Histone H2A [Chlorella sorokiniana] >PRW57021.1 Histone H2A [Chlorella sorokiniana] >PRW57065.1 Histone H2A [Chlorella sorokiniana] >PRW57122.1 Histone H2A [Chlorella sorokiniana] >PRW57339.1 Histone H2A [Chlorella sorokiniana])

HSP 1 Score: 199.5 bits (506), Expect = 6.200e-48
Identity = 103/125 (82.40%), Postives = 115/125 (92.00%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKA 126
            M+G+GK G+ +GKK VS+SSKAGLQFPVGRI+R+LKKGRYA R+G+GAPVYLAAVLEYL AE+LELAGNAARDNKKTRIIPRH+QLAVRNDEEL+KLL GVTIA GGVLPNIHSVLLPK   KKA
Sbjct:    1 MSGRGK-GKTSGKKAVSKSSKAGLQFPVGRIARYLKKGRYAERIGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLAGVTIAEGGVLPNIHSVLLPKKSGKKA 124
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: XP_013895604.1 (Histone H2A [Monoraphidium neglectum] >KIY96584.1 Histone H2A [Monoraphidium neglectum])

HSP 1 Score: 199.5 bits (506), Expect = 6.200e-48
Identity = 102/124 (82.26%), Postives = 114/124 (91.94%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKK 125
            M+G+GK    +GKK VSRSSKAGLQFPVGRI+RFLKKGRYA R+G+GAPVYLAAVLEYL AE+LEL+GNAARDNKK RI+PRH+QLA+RNDEEL+KLLGGVTIASGGVLPNIH VLLPKTK KK
Sbjct:    1 MSGRGKG--KSGKKPVSRSSKAGLQFPVGRIARFLKKGRYATRIGAGAPVYLAAVLEYLAAEVLELSGNAARDNKKNRIVPRHIQLAIRNDEELSKLLGGVTIASGGVLPNIHGVLLPKTKGKK 122
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: PRW32884.1 (Histone H2A [Chlorella sorokiniana])

HSP 1 Score: 199.5 bits (506), Expect = 6.200e-48
Identity = 103/125 (82.40%), Postives = 115/125 (92.00%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKA 126
            M+G+GK G+ +GKK VS+SSKAGLQFPVGRI+R+LKKGRYA R+G+GAPVYLAAVLEYL AE+LELAGNAARDNKKTRIIPRH+QLAVRNDEEL+KLL GVTIA GGVLPNIHSVLLPK   KKA
Sbjct:    1 MSGRGK-GKTSGKKAVSKSSKAGLQFPVGRIARYLKKGRYAERIGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLAGVTIAEGGVLPNIHSVLLPKKSGKKA 124
The following BLAST results are available for this feature:
BLAST of NO03G02000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29644.15.100e-5897.60histone-fold-containing protein [Nannochloropsis g... [more]
EWM21571.14.700e-5694.53histone-fold-containing protein [Nannochloropsis g... [more]
XP_013890509.11.600e-4883.87Histone H2A [Monoraphidium neglectum] >KIY91489.1 ... [more]
CBJ32077.14.800e-4883.06histone H2A isoform 2 [Ectocarpus siliculosus][more]
XP_005643617.14.800e-4885.25histone-fold-containing protein, partial [Coccomyx... [more]
PSC68321.14.800e-4882.40Histone H2A [Micractinium conductrix] >PSC68329.1 ... [more]
CBJ48885.16.200e-4883.06histone H2A (ISS) [Ectocarpus siliculosus][more]
XP_005843094.16.200e-4882.40hypothetical protein CHLNCDRAFT_28450 [Chlorella v... [more]
XP_013895604.16.200e-4882.26Histone H2A [Monoraphidium neglectum] >KIY96584.1 ... [more]
PRW32884.16.200e-4882.40Histone H2A [Chlorella sorokiniana][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005700NSK005700Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02000.1NO03G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571934gene_1386Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100050g34gene989Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02000.1NO03G02000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02000 ID=NO03G02000|Name=NO03G02000|organism=Nannochloropsis oceanica|type=gene|length=1338bp
TTGCCAATTCCAGGTCGCCTATGTGTATGTAGTCTTATTAGCACGCACCA
TGCCTTAAGTTTTCAAACGAGGGCCCCTAGAGTCAAATGCTAAGAATCAT
GCCTCAGCCTACCCGGCGATGTCGAGTGACGACATATACTGATCGTTATG
TGATGTTTTGGACCACAATCCAACAATTGACCAATCACATGCCGTGGCGC
TTGATAATTTTCCCAAACTCGGACCCCATGAACTGCTCCACCCACACTCC
GCATTTGATTATTTTTTCTCATCCCCAACACCGCCTCCCCGAATGCCTGC
ATGTCTCGCAGCACACGTTGCAGTGTCTCTCTCCACGCCTTTAAATGCTT
TGATGTATATGTATTTCTCTAGTTTTCAGTGAATGATCAGCATGTAGGCC
AGTGTCTTGCATTGCTGACGATTCTCATCCCTGACCCCACTTACGGGCAT
TTCAAAGAGGTCAGCACACACCCATCAACCCATCTCACATCCCACAACCC
ACACATATGGCCCAGGACACCATGTCAAGGTTTTTGCCCCCACGCCACTC
CTCTCACACACCATCAGATACAGAAAGCACCCTCACTCATCCTCCCTCCC
CACTTCTCACCCTGGAACAGAAAACCTCTCAACTTCTATAAAAAAAATGG
CTGGCAAAGGAAAGGCTGGCCGTGGTGCCGGAAAGAAGGGCGTGTCCCGT
TCCTCGAAGGCTGGTCTCCAGTTCCCCGTGGGCCGTATCTCCCGCTTCCT
CAAGAAAGGCCGCTACGCTGCCCGCGTGGGGTCCGGTGCTCCCGTGTACC
TTGCCGCCGTCCTCGAATACCTGACGGCCGAGATCCTCGAGCTGGCCGGT
AACGCTGCCCGTGACAACAAGAAGACGCGCATTATTCCTCGCCACGTCCA
GTTGGCCGTCCGTAACGACGAGGAGCTCAACAAGCTGCTCGGTGGCGTGA
CCATTGCTTCCGGTGGTGTCCTCCCCAACATCCACTCCGTCCTCCTCCCT
AAGACCAAGGCGAAGAAGGCAACCAAGTAAATATCGACGTACAACCCACT
TAAAAAAGAGACGCTTGTCCTAGCTGGCAGCGCCCAATCCACGGTTTTTT
TAAAACCGCCCACACTGTCAATTCACTCAATATCCGCTCTTGTACCTGTT
TCTTTTGTCGCTTTTCTAGCTCCTCTCCTTACAGCCTTCTTCCCCTAGAT
TTGCTTTGGTGACAGCCTGGAAAGTGTCGAAGGAAAATGGAGGGGTATGA
GGTATGGAAAAGAAATGTGTACGAAGCCAAAACTCCGAAGAAAAAACAAC
AAAAACACACCACTGAGAAAGTATATCGCAACAGTTGG
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protein sequence of NO03G02000.1

>NO03G02000.1-protein ID=NO03G02000.1-protein|Name=NO03G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=128bp
MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPV
YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGG
VTIASGGVLPNIHSVLLPKTKAKKATK*
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Synonyms
Publications