NO03G01950, NO03G01950 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G01950 vs. NCBI_GenBank
Match: EWM29629.1 (histone h1 [Nannochloropsis gaditana]) HSP 1 Score: 99.4 bits (246), Expect = 1.600e-17 Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 0 Query: 51 MSKPSNYDLIKEAILALKERSGSSPAAIKAYLAKQHPTITIDHRFLAALKSGVAAGKLIKVKASYKLSD 120 MSKPSN+DLI+EAILALK+R+GSSPAAI+AYL K P+ DH F AAL+SG GKLIKVKASYKLS+ Sbjct: 1 MSKPSNFDLIREAILALKDRTGSSPAAIRAYLTKNSPSFQDDHHFKAALRSGEKTGKLIKVKASYKLSE 69
BLAST of NO03G01950 vs. NCBI_GenBank
Match: XP_005643665.1 (hypothetical protein COCSUDRAFT_54749 [Coccomyxa subellipsoidea C-169] >EIE19121.1 hypothetical protein COCSUDRAFT_54749 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 70.1 bits (170), Expect = 1.000e-8 Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 0 Query: 58 DLIKEAILALKERSGSSPAAIKAYLAKQHPTITIDHRFLAA--LKSGVAAGKLIKVKASYKLSD 120 DLIKEAIL LKER GSSPAAIK + ++HP++ + A LK AAGKL+KVKASYKLS+ Sbjct: 17 DLIKEAILTLKERGGSSPAAIKKVIGQKHPSLPAGWEKVTALQLKRLTAAGKLVKVKASYKLSE 80
BLAST of NO03G01950 vs. NCBI_GenBank
Match: XP_004287827.1 (PREDICTED: histone H1 [Fragaria vesca subsp. vesca]) HSP 1 Score: 66.6 bits (161), Expect = 1.100e-7 Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 0 Query: 50 TMSKPSNYDLIKEAILALKERSGSSPAAIKAYLAKQHPTITIDHRFLAA--LKSGVAAGKLIKVKASYKLSDA 121 T P + +IKEA+LAL E+SGSSP AI Y+ + H + ++ + A LK+ A GKL+KVKASYKLS+A Sbjct: 51 TAPHPPYFQMIKEALLALNEKSGSSPYAIAKYMEENHKALPVNFKKTLALQLKNSEARGKLVKVKASYKLSEA 123
BLAST of NO03G01950 vs. NCBI_GenBank
Match: XP_010029700.1 (PREDICTED: histone H1 [Eucalyptus grandis] >KCW56661.1 hypothetical protein EUGRSUZ_I02364 [Eucalyptus grandis]) HSP 1 Score: 66.2 bits (160), Expect = 1.500e-7 Identity = 39/74 (52.70%), Postives = 50/74 (67.57%), Query Frame = 0 Query: 50 TMSKPSNYDLIKEAILALKERSGSSPAAIKAYLAKQHPTI-TIDHRFLAA--LKSGVAAGKLIKVKASYKLSDA 121 T S P + +IKEA+LAL E+SGSSP AI Y+ +H + + R + A LK+ A GKLIKVKASYKLS+A Sbjct: 63 TASHPPYFQMIKEAVLALNEKSGSSPYAIAKYMEDKHKAVLPANFRKILALQLKNSAAKGKLIKVKASYKLSEA 136
BLAST of NO03G01950 vs. NCBI_GenBank
Match: APX44022.1 (H1.3, partial [Eucalyptus globulus]) HSP 1 Score: 66.2 bits (160), Expect = 1.500e-7 Identity = 39/74 (52.70%), Postives = 50/74 (67.57%), Query Frame = 0 Query: 50 TMSKPSNYDLIKEAILALKERSGSSPAAIKAYLAKQHPTI-TIDHRFLAA--LKSGVAAGKLIKVKASYKLSDA 121 T S P + +IKEA+LAL E+SGSSP AI Y+ +H + + R + A LK+ A GKLIKVKASYKLS+A Sbjct: 2 TASHPPYFQMIKEAVLALNEKSGSSPYAIAKYMEDKHKAVLPANFRKILALQLKNSAAKGKLIKVKASYKLSEA 75
BLAST of NO03G01950 vs. NCBI_GenBank
Match: XP_003612139.1 (histone H1 [Medicago truncatula] >AES95097.1 linker histone H1 and h5 family protein [Medicago truncatula]) HSP 1 Score: 65.5 bits (158), Expect = 2.500e-7 Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 0 Query: 45 SDRSDTMSKPSNYDLIKEAILALKERSGSSPAAIKAYL-AKQHPTITIDHRFLAA--LKSGVAAGKLIKVKASYKLSDA 121 S ++ T S P ++++KEA+LALKER+GSSP AI Y+ K P + + + + + LK+ GKL+K+KASYKLSDA Sbjct: 27 SKQTKTASHPPYFEMVKEALLALKERNGSSPYAIAKYMDEKFKPVLPANFKKILSLQLKNQTKRGKLVKIKASYKLSDA 105
BLAST of NO03G01950 vs. NCBI_GenBank
Match: ACD99685.1 (histone H1-like protein [Camellia sinensis]) HSP 1 Score: 65.5 bits (158), Expect = 2.500e-7 Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 0 Query: 52 SKPSNYDLIKEAILALKERSGSSPAAIKAYLAKQH-PTITIDHRFLAA--LKSGVAAGKLIKVKASYKLSDA 121 S P + +IKEA+LAL E+SGSSP AI Y+ ++H P + + R + LK+ A GKLIK+KASYKLS+A Sbjct: 52 SHPPYFQMIKEALLALNEKSGSSPYAIAKYMEEEHKPVLPENFRKILGLQLKNSAAKGKLIKIKASYKLSEA 123
BLAST of NO03G01950 vs. NCBI_GenBank
Match: XP_012857684.1 (PREDICTED: histone H1-like [Erythranthe guttata] >EYU20524.1 hypothetical protein MIMGU_mgv1a014603mg [Erythranthe guttata]) HSP 1 Score: 65.1 bits (157), Expect = 3.300e-7 Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 0 Query: 50 TMSKPSNYDLIKEAILALKERSGSSPAAIKAYLAKQHPTITIDH--RFLA-ALKSGVAAGKLIKVKASYKLSD 120 T S P +++IKEA+LALKE+SGSSP AI Y+ +H + + + L LK+ A GKLIK+KASYKLS+ Sbjct: 38 TASHPPYFEMIKEAVLALKEKSGSSPYAIAKYMEDKHKGVLPPNFRKILGLQLKNSAAKGKLIKIKASYKLSE 110
BLAST of NO03G01950 vs. NCBI_GenBank
Match: XP_012491572.1 (PREDICTED: histone H1 [Gossypium raimondii] >KJB43367.1 hypothetical protein B456_007G196300 [Gossypium raimondii]) HSP 1 Score: 65.1 bits (157), Expect = 3.300e-7 Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 0 Query: 52 SKPSNYDLIKEAILALKERSGSSPAAIKAYLAKQHPTI-TIDHRFLAA--LKSGVAAGKLIKVKASYKLSDA 121 ++P + +IKEA+LALKE+SGSSP AI Y+ ++H + + R + LK+ A GKLIK+KASYKLS+A Sbjct: 48 ARPPYFQMIKEALLALKEKSGSSPYAIAKYMEEKHKAVLPANFRKILGLQLKTSAARGKLIKIKASYKLSEA 119
BLAST of NO03G01950 vs. NCBI_GenBank
Match: XP_017255045.1 (PREDICTED: histone H1 [Daucus carota subsp. sativus] >KZM91140.1 hypothetical protein DCAR_021495 [Daucus carota subsp. sativus]) HSP 1 Score: 65.1 bits (157), Expect = 3.300e-7 Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 0 Query: 50 TMSKPSNYDLIKEAILALKERSGSSPAAIKAYLAKQHPTI-TIDHRFLAA--LKSGVAAGKLIKVKASYKLSDA 121 T S P+ +++IKEAI ALKER+GSSP AI Y+ +H + + R + LK+ GKLIKVKASYKLSD+ Sbjct: 47 TASHPTYFEMIKEAISALKERAGSSPYAIAKYMEDKHKAVLPANFRKILGLQLKNSATKGKLIKVKASYKLSDS 120 The following BLAST results are available for this feature:
BLAST of NO03G01950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G01950 ID=NO03G01950|Name=NO03G01950|organism=Nannochloropsis oceanica|type=gene|length=5845bpback to top protein sequence of NO03G01950.1 >NO03G01950.1-protein ID=NO03G01950.1-protein|Name=NO03G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bpback to top Synonyms
Publications
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