NO03G01800, NO03G01800 (gene) Nannochloropsis oceanica

Overview
NameNO03G01800
Unique NameNO03G01800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length701
Alignment locationchr3:560603..561303 -

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Properties
Property NameValue
DescriptionNadh-ubiquinone oxidoreductase b18 subunit family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:560603..561303 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008137NADH dehydrogenase (ubiquinone) activity
GO:0003954NADH dehydrogenase activity
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR008698NADH_UbQ_OxRdtase_B18_su
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
[Close]
BLAST of NO03G01800 vs. NCBI_GenBank
Match: EWM29645.1 (nadh-ubiquinone oxidoreductase b18 subunit family protein [Nannochloropsis gaditana])

HSP 1 Score: 147.1 bits (370), Expect = 2.100e-32
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 0 
Query:    1 MTVSEVKATKEEMDKGQIDLALRDACAHLLIPLNKCRRVTFFLPWKCEDERHGYEACQYAEYRKRAQLLADK 73
            MTVSE+K TKEEMDK QIDLALRDACAHLLIPLNKCRR+TFFLPWKCEDERHGYEACQYAEYRKRAQLLA+K
Sbjct:    1 MTVSELKTTKEEMDKAQIDLALRDACAHLLIPLNKCRRMTFFLPWKCEDERHGYEACQYAEYRKRAQLLAEK 72
[Close]
BLAST of NO03G01800 vs. NCBI_GenBank
Match: XP_006694606.1 (hypothetical protein CTHT_0042030 [Chaetomium thermophilum var. thermophilum DSM 1495] >EGS19721.1 hypothetical protein CTHT_0042030 [Chaetomium thermophilum var. thermophilum DSM 1495])

HSP 1 Score: 99.8 bits (247), Expect = 3.900e-18
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 0 
Query:    7 KATKEEMDKGQIDLALRDACAHLLIPLNKCRRVTFFLPWKCEDERHGYEACQYAEYRKRAQLLAD 72
            +AT+EEM   ++ LA RD+CAHLLIPLN+CR  T++LPWKCEDERH YE CQY E++KR Q + +
Sbjct:   11 RATREEMRDAKVPLAYRDSCAHLLIPLNRCRYETYYLPWKCEDERHSYEKCQYLEFKKRVQKMEE 75
[Close]
BLAST of NO03G01800 vs. NCBI_GenBank
Match: XP_022838341.1 (NADH:ubiquinone oxidoreductase, B18 subunit [Ostreococcus tauri] >CEF96859.1 NADH:ubiquinone oxidoreductase, B18 subunit [Ostreococcus tauri])

HSP 1 Score: 99.4 bits (246), Expect = 5.100e-18
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 0 
Query:    2 TVSEVKATKEEMDKGQIDLALRDACAHLLIPLNKCRRVTFFLPWKCEDERHGYEACQYAEYRKR 66
            T SE+ AT+EEM + ++D+  RD CAHLLIPLN+CRR +FFLPWKCE ERH YE CQY EY KR
Sbjct:    3 TASEMIATREEMREAKLDIGYRDFCAHLLIPLNECRRKSFFLPWKCEHERHVYEKCQYKEYMKR 66
[Close]
BLAST of NO03G01800 vs. NCBI_GenBank
Match: PHH86477.1 (hypothetical protein CDD83_10198 [Cordyceps sp. RAO-2017])

HSP 1 Score: 99.4 bits (246), Expect = 5.100e-18
Identity = 43/71 (60.56%), Postives = 56/71 (78.87%), Query Frame = 0 
Query:    7 KATKEEMDKGQIDLALRDACAHLLIPLNKCRRVTFFLPWKCEDERHGYEACQYAEYRKRA----QLLADKN 74
            +AT+EEM + ++ LA RD+CAHLLIPLNKCR++T++ PWKCEDERH YE CQY E++KR     +L A KN
Sbjct:   12 RATREEMREARLPLAYRDSCAHLLIPLNKCRKMTWYAPWKCEDERHSYEKCQYLEFQKRVAKMDELRAAKN 82
[Close]
BLAST of NO03G01800 vs. NCBI_GenBank
Match: XP_007508929.1 (predicted protein [Bathycoccus prasinos] >CCO20015.1 predicted protein [Bathycoccus prasinos])

HSP 1 Score: 98.6 bits (244), Expect = 8.600e-18
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0 
Query:    4 SEVKATKEEMDKGQIDLALRDACAHLLIPLNKCRRVTFFLPWKCEDERHGYEACQYAE 62
            S +KATKEEM K  IDLA RD CAHLLIPLN+CRR +FFLPWKC+DERH YE CQY E
Sbjct:    9 STMKATKEEMKKAGIDLAYRDFCAHLLIPLNECRRKSFFLPWKCKDERHVYEKCQYEE 66
[Close]
BLAST of NO03G01800 vs. NCBI_GenBank
Match: CCE32110.1 (uncharacterized protein CPUR_05968 [Claviceps purpurea 20.1])

HSP 1 Score: 97.1 bits (240), Expect = 2.500e-17
Identity = 39/58 (67.24%), Postives = 50/58 (86.21%), Query Frame = 0 
Query:    8 ATKEEMDKGQIDLALRDACAHLLIPLNKCRRVTFFLPWKCEDERHGYEACQYAEYRKR 66
            AT+EEM + ++ LA RD+CAHLLIPLNKCR+ +++LPWKCEDERH YE CQY E++KR
Sbjct:   12 ATREEMREARLPLAYRDSCAHLLIPLNKCRKSSWYLPWKCEDERHSYEKCQYVEFKKR 69
[Close]
BLAST of NO03G01800 vs. NCBI_GenBank
Match: OJI99883.1 (hypothetical protein ASPVEDRAFT_81473 [Aspergillus versicolor CBS 583.65])

HSP 1 Score: 97.1 bits (240), Expect = 2.500e-17
Identity = 38/63 (60.32%), Postives = 52/63 (82.54%), Query Frame = 0 
Query:    3 VSEVKATKEEMDKGQIDLALRDACAHLLIPLNKCRRVTFFLPWKCEDERHGYEACQYAEYRKR 66
            +++ +AT+EEM   ++ L  RD+CAHLLIPLN+CR+  ++LPWKCEDERHGYE CQY E++KR
Sbjct:   13 LADTQATREEMSAARLPLQYRDSCAHLLIPLNRCRQQEYYLPWKCEDERHGYEKCQYEEFKKR 75
[Close]
BLAST of NO03G01800 vs. NCBI_GenBank
Match: OJJ60557.1 (hypothetical protein ASPSYDRAFT_56103 [Aspergillus sydowii CBS 593.65])

HSP 1 Score: 97.1 bits (240), Expect = 2.500e-17
Identity = 38/63 (60.32%), Postives = 52/63 (82.54%), Query Frame = 0 
Query:    3 VSEVKATKEEMDKGQIDLALRDACAHLLIPLNKCRRVTFFLPWKCEDERHGYEACQYAEYRKR 66
            +++ +AT+EEM   ++ L  RD+CAHLLIPLN+CR+  ++LPWKCEDERHGYE CQY E++KR
Sbjct:   13 LTDTQATREEMSAARLPLQYRDSCAHLLIPLNRCRQQEYYLPWKCEDERHGYEKCQYEEFKKR 75
[Close]
BLAST of NO03G01800 vs. NCBI_GenBank
Match: CRL22387.1 (NADH:ubiquinone oxidoreductase, B18 subunit [Penicillium camemberti] >OQD61245.1 hypothetical protein PENPOL_c018G08718 [Penicillium polonicum])

HSP 1 Score: 96.7 bits (239), Expect = 3.300e-17
Identity = 37/63 (58.73%), Postives = 51/63 (80.95%), Query Frame = 0 
Query:    3 VSEVKATKEEMDKGQIDLALRDACAHLLIPLNKCRRVTFFLPWKCEDERHGYEACQYAEYRKR 66
            +SE  AT++EM + ++ +  RD+CAHLLIPLN+CR+  ++LPWKCEDERH YE CQY E++KR
Sbjct:   13 LSETSATRQEMSEARVPMQYRDSCAHLLIPLNRCRQAEYYLPWKCEDERHSYEKCQYEEFKKR 75
[Close]
BLAST of NO03G01800 vs. NCBI_GenBank
Match: CEL07621.1 (Putative NADH-ubiquinone oxidoreductase B18 subunit [Aspergillus calidoustus])

HSP 1 Score: 96.7 bits (239), Expect = 3.300e-17
Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 0 
Query:    3 VSEVKATKEEMDKGQIDLALRDACAHLLIPLNKCRRVTFFLPWKCEDERHGYEACQYAEYRKRA----QLLADKN 74
            +++ +AT+EEM   ++ L  RD+CAHLLIPLN+CR+  ++LPWKCEDERH YE CQY E++KR     +L A KN
Sbjct:   50 LADTQATREEMSAARLPLQYRDSCAHLLIPLNRCRQQEYYLPWKCEDERHSYEKCQYVEFKKRVAKMDELRAAKN 124
The following BLAST results are available for this feature:
BLAST of NO03G01800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29645.12.100e-3293.06nadh-ubiquinone oxidoreductase b18 subunit family ... [more]
XP_006694606.13.900e-1861.54hypothetical protein CTHT_0042030 [Chaetomium ther... [more]
XP_022838341.15.100e-1867.19NADH:ubiquinone oxidoreductase, B18 subunit [Ostre... [more]
PHH86477.15.100e-1860.56hypothetical protein CDD83_10198 [Cordyceps sp. RA... [more]
XP_007508929.18.600e-1875.86predicted protein [Bathycoccus prasinos] >CCO20015... [more]
CCE32110.12.500e-1767.24uncharacterized protein CPUR_05968 [Claviceps purp... [more]
OJI99883.12.500e-1760.32hypothetical protein ASPVEDRAFT_81473 [Aspergillus... [more]
OJJ60557.12.500e-1760.32hypothetical protein ASPSYDRAFT_56103 [Aspergillus... [more]
CRL22387.13.300e-1758.73NADH:ubiquinone oxidoreductase, B18 subunit [Penic... [more]
CEL07621.13.300e-1754.67Putative NADH-ubiquinone oxidoreductase B18 subuni... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005721NSK005721Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01800.1NO03G01800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571874gene_1365Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100050g13gene1007Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01800.1NO03G01800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01800 ID=NO03G01800|Name=NO03G01800|organism=Nannochloropsis oceanica|type=gene|length=701bp
ATGACTGTTTCAGgtgagcgccctgtgtgtcatatgcccgttgaggcctc
cttctcacatcctctctgacccaaccaacgcattggcaaaacagAGGTAA
AGGCCACCAAGGAGGAGATGGACAAGGGGCAGATTGATCTTGCCCTGAGA
GATGCTTGCGCCCACCTCCTCATCCCGCTCAACAAgtatgtgccattgtg
aaaagggtggagcatcttgtatacgacttaagtgagggctagcggcatga
cgacgatattattcccatttcctctcactctagtggtttcagcactcact
ttcattcctttttttcccttagATGCCGGCGCGTGACGTTTTTTCTACCC
TGGAAGTGCGAGGACGAGCGGCATGGGTATGAGGCTTGCCAGTACGCCGA
gtaagtgcatgagcacgggagagagggggggagttagggagggagggaga
gtttgatttcaaataacggcacaggtccttcgcatctatggacggctgtc
attgagtatcgttcggcaaatttttttaaaatgaggaaaaacttttctta
tctcttcctcttcatttcctttttttttttcccttgaggtggatgtgtgt
tggtgtttatgtttgtttttctctgtggattaaattaatcaaaccactta
cccacttacagGTATCGCAAGAGAGCACAACTGCTGGCGGACAAGAACTA
A
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protein sequence of NO03G01800.1

>NO03G01800.1-protein ID=NO03G01800.1-protein|Name=NO03G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MTVSEVKATKEEMDKGQIDLALRDACAHLLIPLNKCRRVTFFLPWKCEDE
RHGYEACQYAEYRKRAQLLADKN*
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Synonyms
Publications