NO03G01560, NO03G01560 (gene) Nannochloropsis oceanica

Overview
NameNO03G01560
Unique NameNO03G01560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length940
Alignment locationchr3:475665..476604 -

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Properties
Property NameValue
DescriptionMetal-dependent phosphohydrolase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:475665..476604 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006674HD_domain
IPR003607HD/PDEase_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0008152metabolic process
Homology
BLAST of NO03G01560 vs. NCBI_GenBank
Match: EWM29513.1 (metal-dependent phosphohydrolase [Nannochloropsis gaditana])

HSP 1 Score: 319.7 bits (818), Expect = 6.600e-84
Identity = 157/189 (83.07%), Postives = 169/189 (89.42%), Query Frame = 0
Query:    9 TNATPPSPLQALEFLRVVGKLKTLKRTGWVNNGVELPESVADHMYRMAMCSFLITDPALDRARLMKLAIVHDLAEALVGDIVPHDVRYTKEQKRVLEEEAIKSIARDLGHDSIGAEVVSLWLEYEDQSTPEARVVKDFDKFEMIVQADEYERAQPNQDLTDFFQSTEGAFQHPQVVAWDEELRRQRDTK 198
            TN +PPS  QAL+FLRVVGKLKTLKRTGWVNN V LPESVADHMYRMAMCSFLITDPALDR RLMKLA+VHDLAEALVGDIVPHD RYTKE KR LEE+AI+SIA DLGH+ I AE++SLWLEYEDQSTPEARVVKDFDKFEMI+QADEYER+QP Q+L DFFQST  AFQHPQV  WD ELR+QRD K
Sbjct:   49 TNVSPPSASQALDFLRVVGKLKTLKRTGWVNNKVALPESVADHMYRMAMCSFLITDPALDRTRLMKLAVVHDLAEALVGDIVPHDERYTKELKRTLEEDAIRSIAGDLGHEGISAEIMSLWLEYEDQSTPEARVVKDFDKFEMILQADEYERSQPGQNLEDFFQSTANAFQHPQVREWDAELRKQRDAK 237          
BLAST of NO03G01560 vs. NCBI_GenBank
Match: CBJ26281.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 230.7 bits (587), Expect = 4.000e-57
Identity = 118/187 (63.10%), Postives = 139/187 (74.33%), Query Frame = 0
Query:   16 PLQALEFLRVVGKLKTLKRTGWVNNGVELPESVADHMYRMAMCSFLITDPALDRARLMKLAIVHDLAEALVGDIVPHDVRYTKEQKRVLEEEAIKSIARDLGHDSIGAEVVSLWLEYEDQSTPEARVVKDFDKFEMIVQADEYERAQPNQDLTDFFQSTEGAFQHPQVVAWDEELRRQRDTKLKRHK 203
            P  AL F+RVVGKLK LKRTGWV+ GV  PESV+DHMYRMAMCSFLITDP LDR+R+MKLA+VHDLAEAL GDI P   + +KE KR LEEE +  I   +G D I  E+  LW EYED ++ EARVVKD DK EMIVQAD+YE+ Q   DL +FF+STEG F  PQV +WD+ELR QR  + +  K
Sbjct:   14 PASALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDPTLDRSRIMKLAMVHDLAEALAGDIAPFQ-KVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQ-GLDLGEFFESTEGCFTTPQVQSWDKELREQRAARRQEAK 198          
BLAST of NO03G01560 vs. NCBI_GenBank
Match: XP_009531722.1 (hypothetical protein PHYSODRAFT_355070 [Phytophthora sojae] >EGZ14293.1 hypothetical protein PHYSODRAFT_355070 [Phytophthora sojae])

HSP 1 Score: 213.4 bits (542), Expect = 6.700e-52
Identity = 114/195 (58.46%), Postives = 140/195 (71.79%), Query Frame = 0
Query:   11 ATPPSPLQALEFLRVVGKLKTLKRTGWVNNGVELPESVADHMYRMAMCSFLITD--PALDRARLMKLAIVHDLAEALVGDIVPHDVRYTKEQKRVLEEEAIKSIARDLGHDSIGAEVVSLWLEYEDQSTPEARVVKDFDKFEMIVQADEYERAQPNQDLTDFFQSTEGAFQHPQVVAWDEELRRQRDTKLKRHKR 204
            AT    L A+EFLR+ G+LKTLKRTGWVNN V LPESVADHMYRM+MC  L+ D    ++R + +K+AIVHDLAE+LVGDI PHD    +E K  +E+EA+  I   LG     AE+ SLW EYE  ST EA++VKDFDKFEMI+QAD+YERA  N  L DFFQST+G F+ P V +W EEL  QRD +L + K+
Sbjct:    2 ATGAKALSAIEFLRLCGRLKTLKRTGWVNNKVALPESVADHMYRMSMCCMLLDDANETVNRPKCIKMAIVHDLAESLVGDITPHD-GVAEEDKHRMEKEALDEICNTLGDTPSAAEIRSLWNEYEAGSTEEAKIVKDFDKFEMILQADDYERAH-NVPLDDFFQSTKGKFRTPLVQSWVEELTTQRDARLGKEKK 194          
BLAST of NO03G01560 vs. NCBI_GenBank
Match: XP_008915716.1 (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETI55868.1 hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETK95664.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM02106.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM55352.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM98975.1 hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETO84606.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976] >ETP07279.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >KUF85439.1 HD domain-containing protein 2 [Phytophthora nicotianae])

HSP 1 Score: 208.4 bits (529), Expect = 2.200e-50
Identity = 110/191 (57.59%), Postives = 139/191 (72.77%), Query Frame = 0
Query:   11 ATPPSPLQALEFLRVVGKLKTLKRTGWVNNGVELPESVADHMYRMAMCSFLITD--PALDRARLMKLAIVHDLAEALVGDIVPHDVRYTKEQKRVLEEEAIKSIARDLGHDSIGAEVVSLWLEYEDQSTPEARVVKDFDKFEMIVQADEYERAQPNQDLTDFFQSTEGAFQHPQVVAWDEELRRQRDTKLK 200
            AT    L A+EFLR+ G+LKTLKRTGWVNN V LPESV+DHMYRM MC  L+ D   +++R++ +K+AIVHDLAE+LVGDI PHD    +E K  +E+EA+  I   LG+    AE+  LW EYE  ST EA++VKDFDKFEMI+QAD+YERAQ N  L DFFQST+G F+ P V +W  EL  QR+ +L+
Sbjct:    4 ATGAKALSAIEFLRLCGRLKTLKRTGWVNNKVALPESVSDHMYRMGMCCMLLDDANESVNRSKCIKMAIVHDLAESLVGDITPHD-GVAEEDKHRMEKEALDEICNTLGNTPSAAEIRELWNEYEAGSTEEAKIVKDFDKFEMILQADDYERAQ-NIPLDDFFQSTKGKFRTPLVQSWAAELTDQRNARLE 192          
BLAST of NO03G01560 vs. NCBI_GenBank
Match: ETL49052.1 (hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 208.4 bits (529), Expect = 2.200e-50
Identity = 110/191 (57.59%), Postives = 139/191 (72.77%), Query Frame = 0
Query:   11 ATPPSPLQALEFLRVVGKLKTLKRTGWVNNGVELPESVADHMYRMAMCSFLITD--PALDRARLMKLAIVHDLAEALVGDIVPHDVRYTKEQKRVLEEEAIKSIARDLGHDSIGAEVVSLWLEYEDQSTPEARVVKDFDKFEMIVQADEYERAQPNQDLTDFFQSTEGAFQHPQVVAWDEELRRQRDTKLK 200
            AT    L A+EFLR+ G+LKTLKRTGWVNN V LPESV+DHMYRM MC  L+ D   +++R++ +K+AIVHDLAE+LVGDI PHD    +E K  +E+EA+  I   LG+    AE+  LW EYE  ST EA++VKDFDKFEMI+QAD+YERAQ N  L DFFQST+G F+ P V +W  EL  QR+ +L+
Sbjct:    4 ATGAKALSAIEFLRLCGRLKTLKRTGWVNNKVALPESVSDHMYRMGMCCMLLDDANESVNRSKCIKMAIVHDLAESLVGDITPHD-GVAEEDKHRMEKEALDEICNTLGNTPSAAEIRELWNEYEAGSTEEAKIVKDFDKFEMILQADDYERAQ-NIPLDDFFQSTKGKFRTPLVQSWAAELTDQRNARLE 192          
BLAST of NO03G01560 vs. NCBI_GenBank
Match: OQS05729.1 (HD domain-containing protein 2-like isoform 1 [Thraustotheca clavata])

HSP 1 Score: 205.3 bits (521), Expect = 1.800e-49
Identity = 113/190 (59.47%), Postives = 135/190 (71.05%), Query Frame = 0
Query:   15 SPLQALEFLRVVGKLKTLKRTGWVNNGVELPESVADHMYRMAMCSFLI-TDPALDRARLMKLAIVHDLAEALVGDIVPHDVRYTKEQKRVLEEEAIKSIARDLGHDSIGA-EVVSLWLEYEDQSTPEARVVKDFDKFEMIVQADEYERAQPNQDLTDFFQSTEGAFQHPQVVAWDEELRRQRDTKLKRHK 203
            S   ALEFLRV G LK LKRTGWVN+ VE PESVA+HMYR+AMCS L+  D ++DR + MK+AIVHDLAEA VGDI PHD   + E K  +E++AI  I   LG +S  A E+  LW EYE+ ST EA++VKDFDKFEMI+QADEYE AQ   DL DFF ST+G F+ P V +W  EL  QRDT+    K
Sbjct:    7 SASSALEFLRVCGALKRLKRTGWVNHKVESPESVAEHMYRLAMCSLLLDNDSSVDRMKCMKMAIVHDLAEAFVGDITPHD-GVSDEDKHKMEKDAIDEICTKLGAESEAAKEIRELWHEYENASTEEAKMVKDFDKFEMILQADEYENAQ-GVDLQDFFNSTKGKFKTPLVQSWVSELNAQRDTRKSNSK 194          
BLAST of NO03G01560 vs. NCBI_GenBank
Match: POM57412.1 (Hydrolase-HD superfamily protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 205.3 bits (521), Expect = 1.800e-49
Identity = 110/191 (57.59%), Postives = 137/191 (71.73%), Query Frame = 0
Query:   11 ATPPSPLQALEFLRVVGKLKTLKRTGWVNNGVELPESVADHMYRMAMCSFLITD--PALDRARLMKLAIVHDLAEALVGDIVPHDVRYTKEQKRVLEEEAIKSIARDLGHDSIGAEVVSLWLEYEDQSTPEARVVKDFDKFEMIVQADEYERAQPNQDLTDFFQSTEGAFQHPQVVAWDEELRRQRDTKLK 200
            AT    L A+EFLR+ G+LKTLKRTGWVNN V LPESVADHMYRM+MC  L+ D    ++R++ +K+AIVHDLAE+LVGDI PHD       K  +E+EA+  I   LG  S   E+ +LW EYE  ST EA++VKDFDKFEMI+QAD+YERAQ N  L DFFQST+G F+ P V +W  EL  QR+ +L+
Sbjct:    2 ATGAKALSAIEFLRLCGRLKTLKRTGWVNNKVALPESVADHMYRMSMCCMLLDDANETVNRSKCIKMAIVHDLAESLVGDITPHD-GVADVDKHRMEKEALDEICSTLGDTSSAEEIRALWNEYEAGSTEEAKIVKDFDKFEMILQADDYERAQ-NIPLDDFFQSTKGKFRTPLVQSWVAELTSQRNARLE 190          
BLAST of NO03G01560 vs. NCBI_GenBank
Match: OQR82936.1 (HD domain-containing protein 2-like isoform 1 [Achlya hypogyna])

HSP 1 Score: 202.2 bits (513), Expect = 1.500e-48
Identity = 109/185 (58.92%), Postives = 133/185 (71.89%), Query Frame = 0
Query:   15 SPLQALEFLRVVGKLKTLKRTGWVNNGVELPESVADHMYRMAMCSFLI-TDPALDRARLMKLAIVHDLAEALVGDIVPHDVRYTKEQKRVLEEEAIKSIARDLGHDSIGA-EVVSLWLEYEDQSTPEARVVKDFDKFEMIVQADEYERAQPNQDLTDFFQSTEGAFQHPQVVAWDEELRRQRDTK 198
            S   AL+FLRV G+LK LKRTGWVN+ V+ PESV+DHMYR+AMCS L+  D A+DR + +K+AIVHDLAEA VGDI PHD   + E K  +E +AI  I   LG +S  A E+  LW EYE+ ST EA++VKDFDKFEMI+QADEYE AQ   DL DFF ST+G F+ P V +W  EL  QRD +
Sbjct:    7 SATSALDFLRVCGQLKRLKRTGWVNHKVQAPESVSDHMYRLAMCSLLLDNDSAVDRMKCIKMAIVHDLAEAFVGDITPHD-GVSDEDKHKMERDAIDEICTSLGPESQAAKEIRELWHEYENASTDEAKMVKDFDKFEMILQADEYESAQ-QVDLQDFFNSTQGKFKTPLVQSWVAELNTQRDAR 189          
BLAST of NO03G01560 vs. NCBI_GenBank
Match: XP_024583057.1 (hd domain-containing protein 2-like [Plasmopara halstedii] >CEG46688.1 hd domain-containing protein 2-like [Plasmopara halstedii])

HSP 1 Score: 201.8 bits (512), Expect = 2.000e-48
Identity = 108/191 (56.54%), Postives = 136/191 (71.20%), Query Frame = 0
Query:   11 ATPPSPLQALEFLRVVGKLKTLKRTGWVNNGVELPESVADHMYRMAMCSFLITD--PALDRARLMKLAIVHDLAEALVGDIVPHDVRYTKEQKRVLEEEAIKSIARDLGHDSIGAEVVSLWLEYEDQSTPEARVVKDFDKFEMIVQADEYERAQPNQDLTDFFQSTEGAFQHPQVVAWDEELRRQRDTKLK 200
            AT      A+EFLR+ G LKTLKRTGWVNN V +PESVADHMYRM+MC  L+ D   AL+R++ +K+AIVHDLAE+L+GDI PHD    +E K  +E+EA+ +I   LG      E+  LW EYE   T EA++VKDFDKFEMI+QADEYE+AQ N  L DFFQST+G F+ P V +W  EL  QR+ +L+
Sbjct:    2 ATKSKATCAIEFLRLCGSLKTLKRTGWVNNKVAMPESVADHMYRMSMCCMLLEDANEALNRSKCIKMAIVHDLAESLIGDITPHD-GIAEEVKHRMEKEALDNICSTLGDTPSALEIRELWNEYEAGLTEEAKMVKDFDKFEMILQADEYEKAQ-NISLDDFFQSTKGKFRTPLVQSWVSELSTQRNARLE 190          
BLAST of NO03G01560 vs. NCBI_GenBank
Match: XP_008872241.1 (hypothetical protein H310_08318 [Aphanomyces invadans] >ETV98813.1 hypothetical protein H310_08318 [Aphanomyces invadans])

HSP 1 Score: 201.4 bits (511), Expect = 2.600e-48
Identity = 104/180 (57.78%), Postives = 127/180 (70.56%), Query Frame = 0
Query:   19 ALEFLRVVGKLKTLKRTGWVNNGVELPESVADHMYRMAMCSFLIT-DPALDRARLMKLAIVHDLAEALVGDIVPHDVRYTKEQKRVLEEEAIKSIARDLGHDSIGAEVVSLWLEYEDQSTPEARVVKDFDKFEMIVQADEYERAQPNQDLTDFFQSTEGAFQHPQVVAWDEELRRQRDTK 198
            A+EFLR+ G+LK LKRTGWVN+ V  PESVADHMYRMAMC+ L+  D ++D+ R +K+AIVHDLAE+ VGDI PHD   +  +K  LE  AI  I   LGH     E+  LW EYED +T EA++VKD DKFEMI+QADEYE AQ N  L  FF ST+G FQ P V +W +EL  QR T+
Sbjct:   11 AVEFLRICGQLKRLKRTGWVNHKVNGPESVADHMYRMAMCTLLLDGDSSVDKTRCIKMAIVHDLAESYVGDITPHD-GVSNAEKHRLELNAINEICHKLGHSQAALEIKELWHEYEDAATDEAKLVKDIDKFEMILQADEYETAQDNLHLDQFFTSTDGKFQTPLVQSWVQELSAQRRTR 189          
The following BLAST results are available for this feature:
BLAST of NO03G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29513.16.600e-8483.07metal-dependent phosphohydrolase [Nannochloropsis ... [more]
CBJ26281.14.000e-5763.10conserved unknown protein [Ectocarpus siliculosus][more]
XP_009531722.16.700e-5258.46hypothetical protein PHYSODRAFT_355070 [Phytophtho... [more]
XP_008915716.12.200e-5057.59hypothetical protein, variant 1 [Phytophthora para... [more]
ETL49052.12.200e-5057.59hypothetical protein, variant 1 [Phytophthora para... [more]
OQS05729.11.800e-4959.47HD domain-containing protein 2-like isoform 1 [Thr... [more]
POM57412.11.800e-4957.59Hydrolase-HD superfamily protein [Phytophthora pal... [more]
OQR82936.11.500e-4858.92HD domain-containing protein 2-like isoform 1 [Ach... [more]
XP_024583057.12.000e-4856.54hd domain-containing protein 2-like [Plasmopara ha... [more]
XP_008872241.12.600e-4857.78hypothetical protein H310_08318 [Aphanomyces invad... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005747NSK005747Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01560.1NO03G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571777gene_1335Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g100gene1029Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01560.1NO03G01560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01560 ID=NO03G01560|Name=NO03G01560|organism=Nannochloropsis oceanica|type=gene|length=940bp
ATGGCCAGCAGCCGCACATGCCCCACAAACGCCACCCCACCCTCACCCTT
GCAGGCATTGGAGTTCCTGCGGGTGGTGGGCAAGCTCAAGACGCTGAAGC
GCACGGGATGGGTGAATAATGGAGTGGAGTTGCCCGAGTCGGTGGCTGAC
CACATGTATCGCATGGCAATGTGCTCTTTCCTTATTACGGACCCGGCGTT
GGACCGTGCCCGGCTCATGAAGCTGGCAATAGTACATGATCTGGCAGAGG
CCTTGGTTGGCGACATAGTGCCGCATGACGTGCGGTATACAAAGGAGCAG
AAGCGGGTGTTGGAAGAGgtaagcaagggtcgatggatttctggggctcg
agcgacaacgaagagcagacgagattggatccaccatgttggaagaaggg
ctctgcatgacagaaagtaagccctctatccacgtgatcgagaggggaaa
aaacaatcgagactcttccaccacctcccgccgttcacaacatacttcct
cccgtccatttcaacagGAGGCGATCAAAAGCATCGCTCGAGACCTGGGC
CACGACAGCATTGGGGCCGAAGTTGTTTCGCTGTGGCTGGAGTACGAGGA
TCAGAGCACGCCCGAGGCCCGCGTGGTCAAGGACTTTGACAAgtgagtgg
aaacggaaaggtgcatgaaagagagagatcgataatgtagcaggaaaaaa
tacacacatcatatacaccaacgtggaatcccgattgcctcctactctct
gtaatttatgtatagATTCGAGATGATTGTCCAGGCGGATGAATACGAGC
GGGCCCAACCCAACCAGGACCTGACCGATTTCTTCCAAAGCACAGAAGGC
GCGTTCCAGCACCCGCAAGTAGTAGCCTGGGACGAGGAATTACGGCGTCA
GCGAGATACCAAGCTGAAAAGGCATAAAAGGGAGGGCTAG
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protein sequence of NO03G01560.1

>NO03G01560.1-protein ID=NO03G01560.1-protein|Name=NO03G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MASSRTCPTNATPPSPLQALEFLRVVGKLKTLKRTGWVNNGVELPESVAD
HMYRMAMCSFLITDPALDRARLMKLAIVHDLAEALVGDIVPHDVRYTKEQ
KRVLEEEAIKSIARDLGHDSIGAEVVSLWLEYEDQSTPEARVVKDFDKFE
MIVQADEYERAQPNQDLTDFFQSTEGAFQHPQVVAWDEELRRQRDTKLKR
HKREG*
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Synonyms
Publications