NO03G01330, NO03G01330 (gene) Nannochloropsis oceanica

Overview
NameNO03G01330
Unique NameNO03G01330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2002
Alignment locationchr3:416333..418334 -

Link to JBrowse

Properties
Property NameValue
DescriptionTrna nucleotidyltransferase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:416333..418334 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0016779nucleotidyltransferase activity
GO:0016779nucleotidyltransferase activity
GO:0016740transferase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0006396RNA processing
Vocabulary: INTERPRO
TermDefinition
IPR002646PolA_pol_head_dom
Homology
BLAST of NO03G01330 vs. NCBI_GenBank
Match: PAN16218.1 (hypothetical protein PAHAL_C00576 [Panicum hallii])

HSP 1 Score: 312.0 bits (798), Expect = 4.300e-81
Identity = 210/581 (36.14%), Postives = 303/581 (52.15%), Query Frame = 0
Query:   42 VVPPTIPLTAVEAHLFDLLKLAVAKEAKGTVLRVAGGWVRDKLLGKESDDVDVALDNMSGASFAKSLNTFLQQQGFETRSIGVILANPDQSKHLETARVLVLGHWIDFTNLRTETYRADSRIPDMAFGSAHDDAHRRDFTINALFYNLQTGQVEDLTGKGLSDLLSPEGVIRTPLPALTTFLDDPLRLLRAVRFAARFALPLDDDIVKAAKDGDLQKALYEKVSRERVGIEVEGMLSGKDARPALAFEMLVSLGLTDVMFRLPEEMKVQLRPERGRDGWAEEGLGTVRMV-NLLLMYREDDGLLKGDDKKEDEFATTMTKVLQGLRESEAYKRPRREHRLLFLSAMLRAWAGHYTVEEKKIVKKGRESEREKRVPIVQWFIREALKLRAKDAEDMTLLLGTLDRLQALSRSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKGGENSNEQRVRLEAGMVLRELKELWRTGLDLACARELAITFEEKLEISAAVTTLKAVTTSFLEVLTRYRRTREALEIMGLDQIWKLRPLLDGKAVITLLRLQK-GPMVGQVMEAQIEWQLQHPKEGVEALTEHLK 621
            VV  T+ LT  E  +F  L   V     GT LRVAGGWVRDKLLGK+S D+D+ALDNM+G +F + +N +L+  G E + IGVI  NPDQSKHLETAR+L+L  WIDF NLR+ETY  +SRIP M  G+A +DAHRRD TIN+LF+N+    VEDLTG+G+ DL   +G+I TPLPA  TFLDDPLR+LRA+RFAARF   L +D+ +AA D  ++  L  K+SRER+G E++ M+S  D  P  A   +  LGL  V+F  PE       P   +  W  + +  +    NL             D K +DE                       + RL   SA+       + ++           +R KRVP+  + I+ +LKL+A DAE +  +    ++   L   +                                    E   +   R+ AG++LRE+K+ WR  L       ++I    + E +A +   +       E   +Y R   A+  + LD +WKL+P+LDGK+++ +++++  GP+VG   +  ++WQL HP   ++   E +K
Sbjct:   70 VVRETVELTEKEEQIFRRLLDVVRHFGLGTQLRVAGGWVRDKLLGKDSADIDIALDNMTGQNFCEKVNEYLELIGEEQKGIGVIQCNPDQSKHLETARMLILDIWIDFVNLRSETYAENSRIPTMEVGTAKEDAHRRDLTINSLFFNINNNSVEDLTGRGIEDL--KKGLIVTPLPAKATFLDDPLRVLRAIRFAARFNFTLAEDLKEAASDERVKSELGSKISRERIGHEIDLMMS--DKHPVKAMCDIRDLGLFYVVFSFPEN---STPPVFDKCDW--QCVSHIEAAWNLAYSIGSSVFSSGSDPKLQDE-----------------------QRRLYLYSALFIPLRNMFYLD-----------KRSKRVPVSSYIIKHSLKLKASDAETVVNIHAASEKFAELVLLLESSVDVRTLKEKLEDEYL------------------EIPTDSVKRVCAGLILREIKDFWRVAL------LVSILSYPEAENAADIHNKQDELHWRKE---KYIRVERAITDLDLDGVWKLKPVLDGKSIMGVMQVKSGGPLVGTWQQRALKWQLAHPNGTMDECIEWMK 580          
BLAST of NO03G01330 vs. NCBI_GenBank
Match: PUZ63133.1 (hypothetical protein GQ55_3G043400 [Panicum hallii var. hallii])

HSP 1 Score: 312.0 bits (798), Expect = 4.300e-81
Identity = 210/581 (36.14%), Postives = 303/581 (52.15%), Query Frame = 0
Query:   42 VVPPTIPLTAVEAHLFDLLKLAVAKEAKGTVLRVAGGWVRDKLLGKESDDVDVALDNMSGASFAKSLNTFLQQQGFETRSIGVILANPDQSKHLETARVLVLGHWIDFTNLRTETYRADSRIPDMAFGSAHDDAHRRDFTINALFYNLQTGQVEDLTGKGLSDLLSPEGVIRTPLPALTTFLDDPLRLLRAVRFAARFALPLDDDIVKAAKDGDLQKALYEKVSRERVGIEVEGMLSGKDARPALAFEMLVSLGLTDVMFRLPEEMKVQLRPERGRDGWAEEGLGTVRMV-NLLLMYREDDGLLKGDDKKEDEFATTMTKVLQGLRESEAYKRPRREHRLLFLSAMLRAWAGHYTVEEKKIVKKGRESEREKRVPIVQWFIREALKLRAKDAEDMTLLLGTLDRLQALSRSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKGGENSNEQRVRLEAGMVLRELKELWRTGLDLACARELAITFEEKLEISAAVTTLKAVTTSFLEVLTRYRRTREALEIMGLDQIWKLRPLLDGKAVITLLRLQK-GPMVGQVMEAQIEWQLQHPKEGVEALTEHLK 621
            VV  T+ LT  E  +F  L   V     GT LRVAGGWVRDKLLGK+S D+D+ALDNM+G +F + +N +L+  G E + IGVI  NPDQSKHLETAR+L+L  WIDF NLR+ETY  +SRIP M  G+A +DAHRRD TIN+LF+N+    VEDLTG+G+ DL   +G+I TPLPA  TFLDDPLR+LRA+RFAARF   L +D+ +AA D  ++  L  K+SRER+G E++ M+S  D  P  A   +  LGL  V+F  PE       P   +  W  + +  +    NL             D K +DE                       + RL   SA+       + ++           +R KRVP+  + I+ +LKL+A DAE +  +    ++   L   +                                    E   +   R+ AG++LRE+K+ WR  L       ++I    + E +A +   +       E   +Y R   A+  + LD +WKL+P+LDGK+++ +++++  GP+VG   +  ++WQL HP   ++   E +K
Sbjct:   69 VVRETVELTEKEEQIFRRLLDVVRHFGLGTQLRVAGGWVRDKLLGKDSADIDIALDNMTGQNFCEKVNEYLELIGEEQKGIGVIQCNPDQSKHLETARMLILDIWIDFVNLRSETYAENSRIPTMEVGTAKEDAHRRDLTINSLFFNINNNSVEDLTGRGIEDL--KKGLIVTPLPAKATFLDDPLRVLRAIRFAARFNFTLAEDLKEAASDERVKSELGSKISRERIGHEIDLMMS--DKHPVKAMCDIRDLGLFYVVFSFPEN---STPPVFDKCDW--QCVSHIEAAWNLAYSIGSSVFSSGSDPKLQDE-----------------------QRRLYLYSALFIPLRNMFYLD-----------KRSKRVPVSSYIIKHSLKLKASDAETVVNIHAASEKFAELVLLLESSVDVRTLKEKLEDEYL------------------EIPTDSVKRVCAGLILREIKDFWRVAL------LVSILSYPEAENAADIHNKQDELHWRKE---KYIRVERAITDLDLDGVWKLKPVLDGKSIMGVMQVKSGGPLVGTWQQRALKWQLAHPNGTMDECIEWMK 579          
BLAST of NO03G01330 vs. NCBI_GenBank
Match: NP_001333563.1 (putative CCA tRNA nucleotidyltransferase 2 [Zea mays] >AQK39571.1 Polynucleotide adenylyltransferase family protein [Zea mays])

HSP 1 Score: 311.6 bits (797), Expect = 5.600e-81
Identity = 204/580 (35.17%), Postives = 300/580 (51.72%), Query Frame = 0
Query:   42 VVPPTIPLTAVEAHLFDLLKLAVAKEAKGTVLRVAGGWVRDKLLGKESDDVDVALDNMSGASFAKSLNTFLQQQGFETRSIGVILANPDQSKHLETARVLVLGHWIDFTNLRTETYRADSRIPDMAFGSAHDDAHRRDFTINALFYNLQTGQVEDLTGKGLSDLLSPEGVIRTPLPALTTFLDDPLRLLRAVRFAARFALPLDDDIVKAAKDGDLQKALYEKVSRERVGIEVEGMLSGKDARPALAFEMLVSLGLTDVMFRLPEEMKVQLRPERGRDGWAEEGLGTVRMVNLLLMYREDDGLLKGDDKKEDEFATTMTKVLQGLRESEAYKRPRREHRLLFLSAMLRAWAGHYTVEEKKIVKKGRESEREKRVPIVQWFIREALKLRAKDAEDMTLLLGTLDRLQALSRSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKGGENSNEQRVRLEAGMVLRELKELWRTGLDLACARELAITFEEKLEISAAVTTLKAVTTSFLEVLTRYRRTREALEIMGLDQIWKLRPLLDGKAVITLLRLQK-GPMVGQVMEAQIEWQLQHPKEGVEALTEHLK 621
            VV  T+ LT  E  +F  L   V   + GT LRVAGGWVRDKLLGK+S D+D+ALDNM+G +F + +N + +  G + + IGVI  NPDQSKHLETAR+L+L  WIDF NLR+ETY  +SRIP M  G+A +DA+RRD TIN+LF+N+    VEDLTG+G+ DL   +G+I TPLPA  TFLDDPLR+LRA+RFAARF   LD+D+ +AA D  ++  L  K+SRER+G E++ M+S  D  P  A   +  LGL  V+F  PE+      P   +  W  + +  +     L           G D K  +                         RL   SA+       + ++           +R K+ P+  + I+++LKL+  DAE +  +    ++   L   +                                    E   +   R+ AG++LRE+KE WR  L       L+I F  +    A     +       E   +Y R   ++  + LD +WKL+P+LDGK+++ +++++  GP++G+  +  ++WQL HP   V+   E +K
Sbjct:   67 VVKETVELTETEERIFRRLLEVVRHFSLGTQLRVAGGWVRDKLLGKDSADIDIALDNMTGQNFCEKVNEYSKLIGEQQKGIGVIQCNPDQSKHLETARMLILDIWIDFVNLRSETYTENSRIPTMEIGTAKEDAYRRDLTINSLFFNINNNSVEDLTGRGIEDL--KKGLIVTPLPAKATFLDDPLRVLRAIRFAARFNFTLDEDLKEAASDEKVKSELGTKISRERIGHEIDLMMS--DKHPVKAMCDIRDLGLFYVVFSFPEKSN---PPVFDKCDW--QCVSHIEAAWDLAYSIGSCVFSSGSDSKSQD----------------------ERRRLYLYSALFNPLRSMFYLD-----------KRSKKAPVSSFIIKDSLKLKTSDAETVVNIHAASEKFAELIPLLESNADVYALKEKLEDEYL------------------EIPGDSVKRVFAGLILREIKEFWRVAL------LLSILFYRETGTPAGTLDEQDELRRRKE---KYIRAERSITDLDLDGVWKLKPILDGKSIMGVMQVKSGGPLIGKWQQRVLKWQLAHPDGTVDECVEWMK 577          
BLAST of NO03G01330 vs. NCBI_GenBank
Match: XP_008604764.1 (hypothetical protein SDRG_01034 [Saprolegnia diclina VS20] >EQC42195.1 hypothetical protein SDRG_01034 [Saprolegnia diclina VS20])

HSP 1 Score: 311.2 bits (796), Expect = 7.300e-81
Identity = 207/582 (35.57%), Postives = 295/582 (50.69%), Query Frame = 0
Query:   45 PTIPLTAVEAHLFDLLKLAVAKEAKGTVLRVAGGWVRDKLLGKESDDVDVALDNMSGASFAKSLNTFLQQQGFETRSIGVILANPDQSKHLETARVLVLGHWIDFTNLRTETYRADS--RIPDMAFGSAHDDAHRRDFTINALFYNLQTGQVEDLTGKGLSDLLSPEGVIRTPLPALTTFLDDPLRLLRAVRFAARFALPLDDDIVKAAKDGDLQKALYEKVSRERVGIEVEGMLSGKDARPALAFEMLVSLGLTDVMFRLPEEMKV-QLRPERGRDGWAEEGLGTVRMVNLLLMYREDDGLLKGDDKKEDEFATTMTKVLQGLRESEAYKRPRREHRLLFLSAMLRAWAGHYTVEEKKIVKKGRESEREKRVPIVQWFIREALKLRAKDAEDM-TLLLGTLDRLQALSRSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKGGENSNEQRVRLEAGMVLRELKELWRTGLDLACARELAITFEEKLEISAAVTTLKAVTTSFLEVLTRYRRTREALEIMGLDQIWKLRPLLDGKAVITLLRLQKGPMVGQVMEAQIEWQLQHPKEGVEALTEHLKGL 623
            PT+ LT  EA LF  L    A++  G  LRVAGGWVRDKLLG+ SDD+D+ LD M+GA+FA+ +NT+  Q G  T S+G+I ANP+QSKHLETA + +   WIDF NLR ETY  +   RIP M FG+   DA RRDFTIN+LFYNL TG VED T KGL+DL   +G++RTPL    TFLDDPLR+LRAVRFA+RF   LD+ + +     +++ AL +KVSRERVG E+ GML+G  A P  A  +L   GL D +F  P  + +    P        E+ +     ++ LL  R+                    ++  G  +  A  R     +L  LSA L   A ++ +++KK V                + I+++LKLRAKDA+D+  ++L +++  +++                                                R+  G++LR++ +LW    D+A   +  +                   TS      +Y   R  +    LD++W L+P+L+GK +I  L+L  GP V  + E  I +QL HP    +    HL+ L
Sbjct:   14 PTLTLTPDEAKLFAFLLDVDAQKGAGLTLRVAGGWVRDKLLGRSSDDIDIVLDKMTGAAFAELVNTYEVQHGHATHSVGIIKANPEQSKHLETATMQLGSGWIDFVNLRAETYAENEAHRIPSMEFGTPLQDAERRDFTINSLFYNLNTGSVEDYTLKGLADL--ADGLVRTPLEPRVTFLDDPLRILRAVRFASRFEFALDESLTRVLVLPEVKDALRKKVSRERVGKELSGMLTGTSAHPDRALSLLFEFGLMDCVFTPPSSLLMGDHEPATLPAATWEQSVACALAMHALLADRD------------------ALRIETGAMDEAALHR----FKLEMLSATLLPLAPYFVLQKKKPVLAS------------HYIIKDSLKLRAKDADDVANVILKSVEPFRSVVLD---------------------------------------------RVAVGLLLRQVGDLWSICADVAYVYDTVLG-----------------GTSVASAAAKYDALRAFVADASLDRVWDLKPILNGKDLIARLQLPPGPAVRVMQEKAIAFQLAHPSASADDCLAHLQSL 497          
BLAST of NO03G01330 vs. NCBI_GenBank
Match: XP_020166462.1 (putative CCA tRNA nucleotidyltransferase 2 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 310.8 bits (795), Expect = 9.500e-81
Identity = 208/596 (34.90%), Postives = 310/596 (52.01%), Query Frame = 0
Query:   43 VPPTIPLTAVEAHLFDLLKLAVAKEAKGTVLRVAGGWVRDKLLGKESDDVDVALDNMSGASFAKSLNTFLQQQGFETRSIGVILANPDQSKHLETARVLVLGHWIDFTNLRTETYRADSRIPDMAFGSAHDDAHRRDFTINALFYNLQTGQVEDLTGKGLSDLLSPEGVIRTPLPALTTFLDDPLRLLRAVRFAARFALPLDDDIVKAAKDGDLQKALYEKVSRERVGIEVEGMLSGKDARPALAFEMLVSLGLTDVMFRLPEEMKVQLRPERGRDGWAEEGLGTVRMVNLLLMYREDDG----LLKGDDKKEDEFATTMTKVLQGLRESEAYKRPRREHRLLFLSAMLRAWAGHYTVEEKKIVKKGRESEREKRVPIVQWFIREALKLRAKDAE-------------DMTLLLGTLDRLQALSRSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKGGENSNEQRVRLEAGMVLRELKELWRTGLDLACARELAITFEEKLEISAAVTTLKAVTTSFLEVLTRYRRTREALEIMGLDQIWKLRPLLDGKAVITLLRLQK-GPMVGQVMEAQIEWQLQHPKEGVEALTEHLK 621
            V  ++ LT  E  +F  L   V     GT LRVAGGWVRDKLLGK S D+D+ALDNM+G +F + +N + +  G E + IGVI  NPDQSKHLETAR+L+ G WIDF NLR+E Y  +SRIP +  G+A +DA RRD TIN+LF+N+ T  VEDLTG+GL DL   +G+I TPLPA +TFLDDPLR+LRA+RFAARF+  L +D+ +AA D  ++  L  K+SRER+G EV+ M+S  D  P  A   +  LGL  V+F  PE+++    P   +  W       V  +          G        D K +DE                       + RL   SA+       + +++K            K+VP+V + IR++LKL+A DA+             ++ LLL + + L+ +   +                                    E   +   R+ AG++LRE+K  WR  L ++      + + E    S +++    +     +   RY     ++  + LD +WK++PLLDGKA++ +++++  GP++G+  +  ++WQL HP+  +E   E +K
Sbjct:   69 VRESVELTEEEERIFARLLDVVRHFGLGTQLRVAGGWVRDKLLGKGSADIDIALDNMTGQNFCERVNEYSKFMGEEQKGIGVIQCNPDQSKHLETARMLIYGIWIDFVNLRSEKYAENSRIPTVEIGTAKEDALRRDLTINSLFFNINTKSVEDLTGRGLEDL--KKGLIDTPLPAKSTFLDDPLRVLRAIRFAARFSFTLAEDLKEAASDEKVKSELGSKISRERIGHEVDLMMS--DKHPVNALRYIRDLGLFYVVFAFPEKLE---PPALDKHDWL-----CVSHLEAAWKLAHSIGRSVFSCGSDSKSQDE-----------------------QQRLCLYSALFTPVRNMFYMDKK-----------SKKVPVVSYIIRDSLKLKASDADTIVNIHVVSEKFAELILLLESNENLETVKEKLDDEYL-------------------------------EIPTDLVKRVFAGLILREIKGFWRVALFIS-----TLVYPEVGNASDSLSKQDELD----KRKERYISVERSIIDLDLDGVWKMKPLLDGKAIMGVMQVKSGGPLIGKWQQRLVKWQLAHPQGTMEECMEWMK 578          
BLAST of NO03G01330 vs. NCBI_GenBank
Match: XP_010930817.1 (PREDICTED: putative CCA tRNA nucleotidyltransferase 2 [Elaeis guineensis])

HSP 1 Score: 310.5 bits (794), Expect = 1.200e-80
Identity = 209/580 (36.03%), Postives = 293/580 (50.52%), Query Frame = 0
Query:   42 VVPPTIPLTAVEAHLFDLLKLAVAKEAKGTVLRVAGGWVRDKLLGKESDDVDVALDNMSGASFAKSLNTFLQQQGFETRSIGVILANPDQSKHLETARVLVLGHWIDFTNLRTETYRADSRIPDMAFGSAHDDAHRRDFTINALFYNLQTGQVEDLTGKGLSDLLSPEGVIRTPLPALTTFLDDPLRLLRAVRFAARFALPLDDDIVKAAKDGDLQKALYEKVSRERVGIEVEGMLSGKDARPALAFEMLVSLGLTDVMFRLPEEMKVQLRPERGRDGWAEEGLGTVRMVNLLLMYREDDGLLKGDDKKEDEFATTMTKVLQGLRESEAYKRPRREHRLLFLSAMLRAWAGHYTVEEKKIVKKGRESEREKRVPIVQWFIREALKLRAKDAEDMTLLLGTLDRLQALSRSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKGGENSNEQRVRLEAGMVLRELKELWRTGLDLACARELAITFEEKLEISAAVTTLKAVTTSFLEVLTRYRRTREALEIMGLDQIWKLRPLLDGKAVITLLRLQK-GPMVGQVMEAQIEWQLQHPKEGVEALTEHLK 621
            VV   I LT  E  +F  L   V      T LRVAGGWVRDKLLGK+  D+D+ALDNM G  F + +N +L   G E + IGVI  NPDQSKHLETAR+ +   WIDF NLR+ETY  +SRIP M FG+A +DA+RRD TIN+LFYN+ T  VED TG+G+ DL +  G I TPLP   TFLDDPLR+LRA+RF ARF   LD+D+ KAA D +++ A+ +K+SRER+G EV+ M+SG   +P  A + +  L L  V+F  PE                                     +++G D+    +      +LQ    S  Y     E R L+L   L     +   E+KK           K++P+  + IR +LKL+  DAE +  L   L+R  ++   +                                        + R+R+ AG++LR++K  WR  L       L+     K+E      T    T    E+     R    +    LD +W+++PLLDGKA++ +L+L+  GP++ +  E  I+WQL HP+   E   + +K
Sbjct:   58 VVKERIDLTEKEEKIFRRLLDVVRHFKLETQLRVAGGWVRDKLLGKDCYDIDIALDNMLGREFCEKVNEYLHSIGEEQQGIGVIQCNPDQSKHLETARMRIYDIWIDFVNLRSETYVENSRIPTMKFGTAEEDAYRRDLTINSLFYNINTDSVEDFTGRGVQDLKT--GYIVTPLPPKATFLDDPLRVLRAIRFGARFGFVLDEDLKKAASDEEVRAAIADKISRERIGHEVDLMISGN--QPLRAMDYICDLQLFYVVFTFPE--------------------------------NPQPSIVEGCDRHCVSYMDAAWNLLQ----STGYSILSDEQRRLYLYGALFLPVRNTIYEDKK----------SKKIPVASYIIRNSLKLKNSDAETVMSLHVALERFFSIISLLESDKDSKIVEAKLEDEFLDIPF------------------DSRIRVLAGLLLRQIKTFWRVAL------LLSALLYPKVEHVGDPLTNNFETERSREIFVNIER---VISKSDLDNVWEMKPLLDGKAIMGVLQLKSGGPLIREWQERLIKWQLAHPEGTTEECLDWMK 560          
BLAST of NO03G01330 vs. NCBI_GenBank
Match: XP_008781519.1 (PREDICTED: putative CCA tRNA nucleotidyltransferase 2 [Phoenix dactylifera])

HSP 1 Score: 310.1 bits (793), Expect = 1.600e-80
Identity = 208/580 (35.86%), Postives = 295/580 (50.86%), Query Frame = 0
Query:   42 VVPPTIPLTAVEAHLFDLLKLAVAKEAKGTVLRVAGGWVRDKLLGKESDDVDVALDNMSGASFAKSLNTFLQQQGFETRSIGVILANPDQSKHLETARVLVLGHWIDFTNLRTETYRADSRIPDMAFGSAHDDAHRRDFTINALFYNLQTGQVEDLTGKGLSDLLSPEGVIRTPLPALTTFLDDPLRLLRAVRFAARFALPLDDDIVKAAKDGDLQKALYEKVSRERVGIEVEGMLSGKDARPALAFEMLVSLGLTDVMFRLPEEMKVQLRPERGRDGWAEEGLGTVRMVNLLLMYREDDGLLKGDDKKEDEFATTMTKVLQGLRESEAYKRPRREHRLLFLSAMLRAWAGHYTVEEKKIVKKGRESEREKRVPIVQWFIREALKLRAKDAEDMTLLLGTLDRLQALSRSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKGGENSNEQRVRLEAGMVLRELKELWRTGLDLACARELAITFEEKLEISAAVTTLKAVTTSFLEVLTRYRRTREALEIMGLDQIWKLRPLLDGKAVITLLRLQK-GPMVGQVMEAQIEWQLQHPKEGVEALTEHLK 621
            VV   I L   E  +F  L   V      T LRVAGGWVRDKLLGK+  D+D+ALDNM G  F + +N +L   G E + IGVI  NPDQSKHLETAR+ +   WIDF NLR+ETY  +SRIP M FG+A +DA+RRD TIN+LFYN+ T  VED TG+G+ DL +  G I TPLP   TFLDDPLR+LRA+RF ARF   LD+D+ KAA D +++ A+ +K+SRER+G EV+ M SG   +P  A   +  L L  V+F  PE                                     +++G D+    +      +LQ    S  Y     E R L+L   L     +   E++K           K++P+  + IR +LKL+  DAE +  L G L+R  ++   +                                        + R+R+ AG++LR++K  WR  L       L+     K++ +    T    T    E+     R   A+   GLD +W+++PLLDGKA++++L+L+  GP++ +  E  I+WQL HP+   +   + +K
Sbjct:   61 VVKERIDLKEKEEKIFRRLLDVVRDFKLETQLRVAGGWVRDKLLGKDCYDIDIALDNMLGREFCEKVNEYLHSIGEEQQGIGVIQCNPDQSKHLETARMRIYDIWIDFVNLRSETYVENSRIPTMKFGTAKEDAYRRDLTINSLFYNINTDSVEDFTGRGVRDLKT--GYIVTPLPPKDTFLDDPLRVLRAIRFGARFGFVLDEDLKKAASDEEVRAAIADKISRERIGHEVDLMFSGN--QPIKAMTYICDLQLFYVVFTFPE--------------------------------NPQPSVVEGCDRHCVSYMDAAWNLLQ----STGYSILSDEQRRLYLYGALFLPVRNTIYEDRK----------SKKIPVASYIIRNSLKLKNSDAETVMSLHGALERFFSIISLLESDGDSKIVEVKLEDEFLDIPF------------------DSRIRVLAGLLLRKIKTFWRVAL------LLSALLYPKVDHAGGPLTNDFETERSREIFVSIDR---AISKSGLDNVWEMKPLLDGKAIMSVLQLKSGGPLIREWQERLIKWQLAHPEGTTDECLDWMK 563          
BLAST of NO03G01330 vs. NCBI_GenBank
Match: XP_004977265.1 (putative CCA tRNA nucleotidyltransferase 2 [Setaria italica] >KQK99523.1 hypothetical protein SETIT_009663mg [Setaria italica])

HSP 1 Score: 309.3 bits (791), Expect = 2.800e-80
Identity = 210/593 (35.41%), Postives = 303/593 (51.10%), Query Frame = 0
Query:   42 VVPPTIPLTAVEAHLFDLLKLAVAKEAKGTVLRVAGGWVRDKLLGKESDDVDVALDNMSGASFAKSLNTFLQQQGFETRSIGVILANPDQSKHLETARVLVLGHWIDFTNLRTETYRADSRIPDMAFGSAHDDAHRRDFTINALFYNLQTGQVEDLTGKGLSDLLSPEGVIRTPLPALTTFLDDPLRLLRAVRFAARFALPLDDDIVKAAKDGDLQKALYEKVSRERVGIEVEGMLSGKDARPALAFEMLVSLGLTDVMFRLPEEMKVQLRPERGRDGWAEEGLGTVRMVNLLLMYREDDGLLKGDDKKEDEFATTMTKVLQGLRESEAYKRPRREHRLLFLSAMLRAWAGHYTVEEKKIVKKGRESEREKRVPIVQWFIREALKLRAKDAE-------------DMTLLLGTLDRLQALSRSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKGGENSNEQRVRLEAGMVLRELKELWRTGLDLACARELAITFEEKLEISAAVTTLKAVTTSFLEVLTRYRRTREALEIMGLDQIWKLRPLLDGKAVITLLRLQK-GPMVGQVMEAQIEWQLQHPKEGVEALTEHLK 621
            VV  T+ LT  E  +F  L   V     GT LRVAGGWVRDKLLGK+S D+D+ALDNM+G +F + +N +L+  G E + IGVI  NPDQSKHLETAR+L+L  WIDF NLR+E Y  +SRIP M  G+A +DA+RRD TIN+LF+N+    VEDLTG+G+ DL   EG+I TPLPA  TFLDDPLR+LRA+RFAARF   L +D+ +AA D  ++  L  K+SRER+G E++ M+S  D  P  A   +  LGL  V+F  P    V   P                      ++ + DG      +     A+++   +         K    + RL   SA+       + ++           +R K+VP+  + I+E+LKL+A DAE             ++ LLL + D +  L   +                                    E   +   R+ AG++LRE+K+ WR          L I+     E   A           L    +Y R   A+  + LD +WKL+P+LDGK+++ +L+++  GP++G+  +  ++WQL HP   ++   E +K
Sbjct:   69 VVRETVELTEKEEQIFRRLLEVVRHFGLGTQLRVAGGWVRDKLLGKDSADIDIALDNMTGQNFCEKVNEYLELIGEEQKGIGVIQCNPDQSKHLETARMLILDIWIDFVNLRSEKYAENSRIPTMEVGTAEEDAYRRDLTINSLFFNINNNSVEDLTGRGIEDL--KEGLIVTPLPAKATFLDDPLRVLRAIRFAARFNFTLAEDLKEAASDEKVKSELGTKISRERIGHEIDLMMS--DKHPVKAMCDIRDLGLFYVVFSFP----VNSNPP---------------------VFDKCDGQCVSHIEAAWNLASSIGSSV--FSNGSDTKLQDEQRRLCLYSALFIPLRNMFYLD-----------KRSKKVPVCSYIIKESLKLKASDAEAVVNIHAASEKFAELILLLESNDDVGTLKEKLEDEYL-------------------------------EIPTDSLKRVFAGLILREIKDFWRVA--------LLISILSNPEAGNAADNRNKQDELHLR-KEKYIRVERAITDLDLDGVWKLKPVLDGKSIMGVLQVKSGGPLIGKWQQRALKWQLAHPNGTMDECIEWMK 579          
BLAST of NO03G01330 vs. NCBI_GenBank
Match: XP_020588325.1 (putative CCA tRNA nucleotidyltransferase 2 [Phalaenopsis equestris])

HSP 1 Score: 308.9 bits (790), Expect = 3.600e-80
Identity = 207/575 (36.00%), Postives = 295/575 (51.30%), Query Frame = 0
Query:   47 IPLTAVEAHLFDLLKLAVAKEAKGTVLRVAGGWVRDKLLGKESDDVDVALDNMSGASFAKSLNTFLQQQGFETRSIGVILANPDQSKHLETARVLVLGHWIDFTNLRTETYRADSRIPDMAFGSAHDDAHRRDFTINALFYNLQTGQVEDLTGKGLSDLLSPEGVIRTPLPALTTFLDDPLRLLRAVRFAARFALPLDDDIVKAAKDGDLQKALYEKVSRERVGIEVEGMLSGKDARPALAFEMLVSLGLTDVMFRLPEEMKVQLRPERGRDGWAEEGLGTVRMVNLLLMYREDDGLLKGDDKKEDEFATTMTKVLQGLRESEAYKRPRREHRLLFLSAMLRAWAGHYTVEEKKIVKKGRESEREKRVPIVQWFIREALKLRAKDAEDMTLLLGTLDRLQALSRSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKGGENSNEQRVRLEAGMVLRELKELWRTGLDLACARELAITFEEKLEISAAVTTLKAVTTSFLEVLTRYRRTREALEIMGLDQIWKLRPLLDGKAVITLLRLQ-KGPMVGQVMEAQIEWQLQHPKEGVEALTEHLK 621
            I LT  E  +F  L   +      T LRVAGGWVRDKLLGK+  D+D+ALDNM G  F + +N +L   G E + IGVI  NPDQSKHLETAR+ +   WIDF NLR+E+Y  +SRIP M FG+A +DA+RRD TIN+LFYN+ T  VEDLTG+G+ DL   +G I TPLP   TFLDDPLR+LRA+RF ARF   LD+D+  AA D +++ AL  K+SRERVG E++ M+SG   RP  A   +  L L   +F LPE      +PE                            +++G D+    +      VLQ +  S      +R +  L+ +  L      YT              + K++P+  + IR +LKL+A DAE +  L G ++R  +L   +                                    +     R R+ AG++LR++K  WR  L L+    L    +E +  S    +         E    +R+    + + GLD +W+++PLLDGKA++ +L+L+  GP++ +  +  I+WQL HP    E   E ++
Sbjct:   67 IDLTMNEETIFRRLLDVIDHFKLNTQLRVAGGWVRDKLLGKDCYDIDIALDNMLGREFCEKVNEYLHSTGEEVQGIGVIQCNPDQSKHLETARMCIYSTWIDFVNLRSESYAENSRIPKMKFGTAEEDAYRRDLTINSLFYNINTTSVEDLTGRGVQDL--KDGYIVTPLPPRETFLDDPLRVLRAIRFGARFNFKLDEDLKIAASDEEVRDALMSKISRERVGHEIDLMISGN--RPVTAMFHICDLQLFHAVFTLPE----NAQPE----------------------------IVEGCDRLCVSYMEAALNVLQLIGFSTFSDEQKRLY--LYGALFLPLKNTVYT------------DNKSKKIPVTNFIIRNSLKLKANDAEMVFALHGAVERFSSLLPFLESDREPVPAEAKLEDEFL------------------DIPPASRKRVLAGLLLRDIKSFWRVALLLS---TLLHPIDETIGYSRNKES---------ERRKIFRKVERIITVFGLDNVWEVKPLLDGKAIMGVLQLKGGGPLIREWQQRMIKWQLAHPDATAEESLEWMQ 561          
BLAST of NO03G01330 vs. NCBI_GenBank
Match: PAN16217.1 (hypothetical protein PAHAL_C00576 [Panicum hallii])

HSP 1 Score: 308.9 bits (790), Expect = 3.600e-80
Identity = 207/581 (35.63%), Postives = 304/581 (52.32%), Query Frame = 0
Query:   42 VVPPTIPLTAVEAHLFDLLKLAVAKEAKGTVLRVAGGWVRDKLLGKESDDVDVALDNMSGASFAKSLNTFLQQQGFETRSIGVILANPDQSKHLETARVLVLGHWIDFTNLRTETYRADSRIPDMAFGSAHDDAHRRDFTINALFYNLQTGQVEDLTGKGLSDLLSPEGVIRTPLPALTTFLDDPLRLLRAVRFAARFALPLDDDIVKAAKDGDLQKALYEKVSRERVGIEVEGMLSGKDARPALAFEMLVSLGLTDVMFRLPEEMKVQLRPERGRDGWAEEGLGTVRMV-NLLLMYREDDGLLKGDDKKEDEFATTMTKVLQGLRESEAYKRPRREHRLLFLSAMLRAWAGHYTVEEKKIVKKGRESEREKRVPIVQWFIREALKLRAKDAEDMTLLLGTLDRLQALSRSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKGGENSNEQRVRLEAGMVLRELKELWRTGLDLACARELAITFEEKLEISAAVTTLKAVTTSFLEVLTRYRRTREALEIMGLDQIWKLRPLLDGKAVITLLRLQK-GPMVGQVMEAQIEWQLQHPKEGVEALTEHLK 621
            VV  T+ LT  E  +F  L   V     GT LRVAGGWVRDKLLGK+S D+D+ALDNM+G +F + +N +L+  G E + IGVI  NPDQSKHLETAR+L+L  WIDF NLR+ETY  +SRIP M  G+A +DAHRRD TIN+LF+N+    VEDLTG+G+ DL   +G+I TPLPA  TFLDDPLR+LRA+RFAARF   L +D+ +AA D  ++  L  K+SRER+G E++ M+S  D  P  A   +  LGL  V+F  PE       P   +  W  + +  +    NL             D K +DE                       + RL   SA+       + ++++           +++VP+  + I+ +LKL+A DAE +  +    ++   L   +                                    E   +   R+ AG++LRE+K+ WR  L       ++I    + E +A +   +       E   +Y R   A+  + LD +WKL+P+LDGK+++ +++++  GP+VG   +  ++WQL HP   ++   E +K
Sbjct:   70 VVRETVELTEKEEQIFRRLLDVVRHFGLGTQLRVAGGWVRDKLLGKDSADIDIALDNMTGQNFCEKVNEYLELIGEEQKGIGVIQCNPDQSKHLETARMLILDIWIDFVNLRSETYAENSRIPTMEVGTAKEDAHRRDLTINSLFFNINNNSVEDLTGRGIEDL--KKGLIVTPLPAKATFLDDPLRVLRAIRFAARFNFTLAEDLKEAASDERVKSELGSKISRERIGHEIDLMMS--DKHPVKAMCDIRDLGLFYVVFSFPEN---STPPVFDKCDW--QCVSHIEAAWNLAYSIGSSVFSSGSDPKLQDE-----------------------QRRLYLYSALFIPLRNMFYLDKRS----------KRQVPVSSYIIKHSLKLKASDAETVVNIHAASEKFAELVLLLESSVDVRTLKEKLEDEYL------------------EIPTDSVKRVCAGLILREIKDFWRVAL------LVSILSYPEAENAADIHNKQDELHWRKE---KYIRVERAITDLDLDGVWKLKPVLDGKSIMGVMQVKSGGPLVGTWQQRALKWQLAHPNGTMDECIEWMK 581          
The following BLAST results are available for this feature:
BLAST of NO03G01330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PAN16218.14.300e-8136.14hypothetical protein PAHAL_C00576 [Panicum hallii][more]
PUZ63133.14.300e-8136.14hypothetical protein GQ55_3G043400 [Panicum hallii... [more]
NP_001333563.15.600e-8135.17putative CCA tRNA nucleotidyltransferase 2 [Zea ma... [more]
XP_008604764.17.300e-8135.57hypothetical protein SDRG_01034 [Saprolegnia dicli... [more]
XP_020166462.19.500e-8134.90putative CCA tRNA nucleotidyltransferase 2 [Aegilo... [more]
XP_010930817.11.200e-8036.03PREDICTED: putative CCA tRNA nucleotidyltransferas... [more]
XP_008781519.11.600e-8035.86PREDICTED: putative CCA tRNA nucleotidyltransferas... [more]
XP_004977265.12.800e-8035.41putative CCA tRNA nucleotidyltransferase 2 [Setari... [more]
XP_020588325.13.600e-8036.00putative CCA tRNA nucleotidyltransferase 2 [Phalae... [more]
PAN16217.13.600e-8035.63hypothetical protein PAHAL_C00576 [Panicum hallii][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005775NSK005775Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01330.1NO03G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521994gene_1310Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g72gene1055Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01330.1NO03G01330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01330 ID=NO03G01330|Name=NO03G01330|organism=Nannochloropsis oceanica|type=gene|length=2002bp
ATAGCCCACGAACAGCAAGGAAAATGTCGCGGTCATCATGAGTAGCAGCA
GGACCACCGCTCCCACGATCAGCACCAGCAGCAGTATCGACCCTCCTCCC
GTCATATCGCCCTCGGCCGCCAAACGTCCTCGCACTATGATCACTCCACC
CACCGTAACCGTCGTCCCACCCACCATCCCCCTCACGGCTGTCGAGGCCC
ACCTGTTCGATCTCTTAAAACTGGCGGTGGCGAAAGAAGCTAAAGGCACC
GTGCTGCGCGTGGCAGGTGGGTGGGTCCGGGACAAGCTGCTGGGCAAGGA
AAGCGATGATGTGGACGTGGCCCTCGACAACATGTCGGGCGCATCCTTTG
CCAAAAGCCTCAACACATTTCTCCAGCAGCAAGGATTTGAGACGCGGTCT
ATCGGTGTGATTCTAGCCAACCCCGACCAGTCCAAGCACTTGGAGACCGC
CCGCGTCCTCGTCCTAGGGCATTGGATCGATTTCACCAACCTCCGCACCG
AGACTTATCGTGCCGATAGCCGCATCCCCGACATGGCTTTTGGGTCTGCG
CACGACGATGCACACCGAAGGGATTTCACGATTAATGCTTTGTTTTACAA
TCTGCAGACTGGCCAGGTAGAGGACTTAACGGGGAAGGGCTTGAGTGATT
TGCTGAGCCCCGAAGGTGTGATTCGCACGCCCTTGCCAGCATTGACCACG
TTCTTAGACGACCCTTTGCGATTGTTACGGGCCGTTAGATTCGCGGCTCG
ATTTGCCTTGCCGTTGGATGACGATATAGTAAAAGCGGCGAAGGACGGGG
ATTTACAGAAGGCACTATACGAAAAAGTGAGTCGAGAACGAGTCGGGATT
GAAGTGGAAGGGATGTTGTCGGGGAAAGACGCCAGACCGGCATTGGCTTT
TGAAATGCTTGTTTCTTTGGGGTTGACGGACGTGATGTTTCGGTTGCCTG
AGGAGATGAAGGTGCAGCTGAGACCGGAGAGAGGGAGGGATGGATGGGCG
GAGGAAGGGTTGGGAACAGTGAGGATGGTGAATTTGTTGTTGATGTATCG
GGAGGATGATGGACTTTTGAAAGGAGATGATAAGAAAGAGGACGAATTTG
CAACGACGATGACAAAGGTATTGCAGGGATTAAGAGAGTCAGAGGCCTAC
AAACGACCTCGGCGGGAGCATCGATTGCTTTTTTTAAGTGCCATGCTGAG
AGCGTGGGCTGGCCACTACACCGTGGAAGAGAAGAAGATTGTGAAGAAGG
GCAGAGAAAGCGAAAGAGAAAAGAGAGTGCCGATCGTTCAGTGGTTCATT
CGGGAGGCATTGAAACTCCGGGCGAAGGATGCTGAGGACATGACCCTGCT
TTTGGGGACGCTTGATAGGTTGCAGGCCTTGAGTCGCAGCATGGCAACAA
CGACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGATGGCG
GTTCAGGAGGCAGATAATCCAGGAATAGGAGGAGGAGGAGTAAAAGGCGG
CGAAAACAGTAATGAGCAGCGGGTGCGGCTGGAGGCGGGTATGGTACTGC
GAGAGCTGAAGGAGTTGTGGCGGACGGGGCTGGACTTGGCATGTGCGCGG
GAACTCGCAATTACGTTTGAAGAGAAATTAGAAATATCAGCAGCAGTTAC
AACACTCAAGGCAGTAACGACGAGCTTCTTGGAGGTTTTGACTCGGTATC
GACGTACGCGCGAAGCCTTGGAGATCATGGGCTTGGACCAGATCTGGAAA
CTCCGGCCGTTGCTGGACGGGAAGGCCGTCATCACCCTTCTTCGCTTACA
AAAAGGACCAATGGTCGGGCAAGTCATGGAAGCGCAGATTGAGTGGCAGC
TTCAGCATCCAAAAGAAGGCGTGGAGGCGTTGACGGAGCACTTGAAAGGA
CTCATGGCAGCGGGCACATTTAGCGCGGCTGAGGGAGAGCGGGAAGGGTA
AGGGTTCGGCTGGAAGATTGTGCAAAAGAAATAATGAAATGTACCATAAG
AA
back to top

protein sequence of NO03G01330.1

>NO03G01330.1-protein ID=NO03G01330.1-protein|Name=NO03G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MSSSRTTAPTISTSSSIDPPPVISPSAAKRPRTMITPPTVTVVPPTIPLT
AVEAHLFDLLKLAVAKEAKGTVLRVAGGWVRDKLLGKESDDVDVALDNMS
GASFAKSLNTFLQQQGFETRSIGVILANPDQSKHLETARVLVLGHWIDFT
NLRTETYRADSRIPDMAFGSAHDDAHRRDFTINALFYNLQTGQVEDLTGK
GLSDLLSPEGVIRTPLPALTTFLDDPLRLLRAVRFAARFALPLDDDIVKA
AKDGDLQKALYEKVSRERVGIEVEGMLSGKDARPALAFEMLVSLGLTDVM
FRLPEEMKVQLRPERGRDGWAEEGLGTVRMVNLLLMYREDDGLLKGDDKK
EDEFATTMTKVLQGLRESEAYKRPRREHRLLFLSAMLRAWAGHYTVEEKK
IVKKGRESEREKRVPIVQWFIREALKLRAKDAEDMTLLLGTLDRLQALSR
SMATTTTTAAAAAAAAAATMAVQEADNPGIGGGGVKGGENSNEQRVRLEA
GMVLRELKELWRTGLDLACARELAITFEEKLEISAAVTTLKAVTTSFLEV
LTRYRRTREALEIMGLDQIWKLRPLLDGKAVITLLRLQKGPMVGQVMEAQ
IEWQLQHPKEGVEALTEHLKGLMAAGTFSAAEGEREG*
back to top
Synonyms
Publications