NO03G01280, NO03G01280 (gene) Nannochloropsis oceanica

Overview
NameNO03G01280
Unique NameNO03G01280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3651
Alignment locationchr3:397562..401212 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:397562..401212 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO03G01280 vs. NCBI_GenBank
Match: EWM29616.1 (hypothetical protein Naga_100006g65 [Nannochloropsis gaditana])

HSP 1 Score: 406.8 bits (1044), Expect = 2.000e-109
Identity = 324/979 (33.09%), Postives = 437/979 (44.64%), Query Frame = 0 
Query:   24 YWRAFIEKFHQHAGSPSTKETCLLLLDVGLVLVFCIGAWGVRQSLSSPHSPTSNTIVIGGTCRDMTAYVLVLTVGLGLYLLQNILHRLQRRLLIAVWQQTYRQSYGEKTQHLQEANEMEPV--QQGRQRWQYEEQHDSPIHSFASSKP-----PFSSCSSSEVQAEDVVAHVRGLQRLEGLRNHSIPGLPMLFLFSWIYAGAVDLQSGCIARYPALGAAYHVFSWAGYLSAVVCLVLLIIQCVCLTAEDTDSPPWASTSSSLSGAGTGADATTARLALHALATTQWLVPVRRAIALVLGPLSLLLPTDDI------SSSPIYTGTALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDFDMTSPLSTSTRPHTRSXXXXXXXXXXXXXXXXXXXXXXHDI-----------LQTALASSPFAIRHRTLRSGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIFTPNRHFSFNKRFL----PLSLPH----LICSALWACLHVAILCLVTTSFYLLGRTSALPAGEMEVCGAARGFLFALAMGFGGYLVLAAWLWVEKERSFRDDPEEHELKGLWLLRTLACLMVISFVWGVMVLREGGXXXXXXXXGCWASQGQLHECVVAFVLLGSMLLFVAAFLHWMATGRWALVSVGQVAQGVAETCRLCLSLLLRLAPHQKLLKAQEKRKERACRVKERVEGREEGRREMFSSPANEMTIQVAEELSLLPFFHIRVIE--------GRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMQAHGIT-SQLPPRALPYTPPLTITTPIGRVIGRR---KSNDAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTPGEEEEDCEGAFHYYQTPRPLVLGATLNSIFDVTPLSLSPLRPRSAIAMGETGGLYLTE 959
            +W  +IEK H    S S +E C+ LL+VGL+++  +GA+G+ Q+ SSP     ++      C D+  YV VLT GLGLYLLQN LHR+QRRLL+A+W    +Q Y E  +  ++ + +  +  + G   W            +A S+P     P  S  +S ++AEDVVAH +GL+RLE LRN+++PGLP++FLF W+YAGA+D++S C+A YPALGAA++  SW GY +A+VCL++ I +      ++      A  S+  S   T          L AL TT+     R+ IA++LGPLS LLP D +        SP   G                                             S F  T  +S   R   RS                                    LQT++  SP AIRHR  RS R                                            F P R+      FL     ++LPH    L+CS  WACLHV I+CLVT+SFYLLG+TS L   EME C A+RGF++ALA+GF  Y  LA WLW EKE SFR+DPEEH LK +WLLR L  L++IS+ WG+MVL+E           C+AS  +L   V+++ +LGS LL +A  LH +AT  W ++S  QV +G+ ET  L +  + RLAPHQ  L       ER  ++ ER+ GR E      S+  +E TIQVAEELSL+P+FH+ VIE        G                                                   +  G T S  P RALP T     TTPIGR++GRR     ++                                                           T  +E +    A +    PR  +L AT+ SIFDVTPLS+ PL+P    A  E   L   E
Sbjct:   31 FWSTYIEKLHNKNSSSSAEEVCVRLLEVGLLILVVVGAYGIHQTFSSPTLKRESS-PAQIYCHDIVVYVWVLTSGLGLYLLQNTLHRIQRRLLVAMW----KQIYPEPNEREKKPSRLHLLFNRTGLGAWCQRAL------QWAKSRPSKLSVPTPSRVASGIRAEDVVAHFQGLERLEKLRNNAMPGLPIMFLFCWLYAGALDVRSSCLAHYPALGAAFYTLSWTGYSAALVCLLITIARYAYSPTDEGAFFRSAHVSNPFSPPPT-------LPPLQALVTTKMFCSTRKIIAMILGPLSALLPMDMVPPFCGYGYSPFSVG---EIGQHEAPTEPVRDVTSSATSTDVSISDVEQGRDVAHIHEGQSFFTNTDSISRGRRGGERSAGNVGSSIPIGDDHDSINFDESSHYEDFAWPVTTTSLQTSIEFSPIAIRHRNSRSTRSSNLASPNRLNDRASSRDSDTSHSSGIAIAAPSSSAVSSFFLLYFNPRRYDLLVALFLGAKRVITLPHSTRRLLCSTFWACLHVLIICLVTSSFYLLGQTSFLSGLEMENCAASRGFVYALAIGFSVYTGLAFWLWKEKENSFREDPEEHALKEVWLLRGLVSLLIISYTWGMMVLKE---------TACYASYPRLRGAVLSYTMLGSTLLAIAVILHALATCAWMVLSTVQVLRGMHETMTLFIRFIFRLAPHQAFL-------ERYGQI-ERI-GRSE------SNLLSERTIQVAEELSLMPYFHVWVIEGGERREEGGNPERARPGPVEGSAAIGSGECGRWEDERDVYSRPSPRRQHQDEEKQHMDAFEGRGATRSPSPLRALPRTH--IPTTPIGRIMGRRTRFSESEGNGDDVHAGRSIFRQVGRYGHVEEEKNGVFEDGSGEAWSSGTDIKDGTTLPAAIRVICETRNQEWQTLPMACNAIDVPRQSILAATMQSIFDVTPLSIDPLQPSPPSATREADALDTVE 962
The following BLAST results are available for this feature:
BLAST of NO03G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29616.12.000e-10933.09hypothetical protein Naga_100006g65 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005782NSK005782Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01280.1NO03G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571677gene_1305Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g65gene1062Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01280.1NO03G01280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01280 ID=NO03G01280|Name=NO03G01280|organism=Nannochloropsis oceanica|type=gene|length=3651bp
GACCATTCCACACGACGGGTCCGGATTGCGGCACGTAAAGTCTCGGCGAG
GCATGACATGCTTCAACCACGCCACTCGCTCCTGTCATATTACATGTCTT
GCGTGCTCCCCATGCACTTTTCACATTGTCAAAGCCCTAAACATGCATTG
AAGCTATGGCTGGGCCTAAAGCTAGGCATTCGTGGAGTCTTTTGTCACTG
GAGAGGTCCAAATGCGTTAAGTATCCATAATTGCACATCCGCATCTGCTT
GCTTGCATCTGCACTGCATCTCACGCACTATTGGCACCCCCTCCACCACA
CTCTCATCCCGCCGCTACCTCTCAAAGGCCTGGCGGCTTTTCCAGACCTT
GCGCACCAGAGGTTTGCCTTTCAGCATCACTTTTCCTCCCCTTTCTGACG
TCCCAATCCTTCTCCCACCCACTCTATCCCTTCATACAGACGACATAAAA
TGTTGCGACCTCCACCCTCACGAGTATCATTCTCGCCGAGTTATCAGTGG
TCTTCACCTTCGGAACAGTACTGGCGCGCCTTTATTGAAAAGTTCCACCA
GCACGCTGGCAGTCCCAGCACGAAAGAGACCTGCCTTCTGCTGCTGGACG
TCGGCCTCGTCCTCGTCTTTTGCATTGGTGCCTGGGGTGTGCGTCAGTCT
TTGTCCTCGCCGCATTCTCCGACATCCAATACAATCGTTATTGGAGGCAC
TTGTCGGGATATGACGGCGTATGTCTTGGTTTTGACCGTTGGATTGGGCC
TTTACTTGTTACAAAACATTTTGCATCGGCTACAGCGCCGCTTATTGATC
GCGGTGTGGCAGCAGACGTACCGCCAGAGTTATGGTGAGAAAACGCAACA
CCTGCAAGAGGCGAATGAGATGGAACCAGTGCAACAAGGGCGGCAGAGAT
GGCAGTACGAGGAGCAGCATGACTCCCCCATCCATTCCTTCGCTTCATCC
AAGCCCCCATTCTCCTCGTGCAGCAGCAGCGAAGTTCAAGCCGAAGACGT
GGTGGCGCACGTCCGCGGCCTCCAACGATTGGAGGGGCTACGAAACCACA
GTATACCTGGATTACCCATGCTTTTCCTATTTAGTTGGATTTATGCGGGA
GCGGTAGACTTGCAAAGTGGGTGTATCGCCCGGTACCCTGCATTAGGGGC
GGCTTATCACGTGTTTTCCTGGGCAGGGTACTTGTCCGCGGTGGTGTGTT
TGGTTCTGTTGATTATACAGTGTGTATGTTTGACTGCCGAGGATACCGAT
TCTCCACCCTGGGCCTCGACGTCGTCGTCGTTGTCAGGAGCAGGCACAGG
CGCAGATGCAACAACCGCGCGCTTGGCCCTCCACGCTCTAGCTACCACAC
AGTGGCTGGTTCCTGTCCGACGAGCCATTGCCTTAGTGCTGGGCCCGTTA
TCTCTACTTTTACCCACCGATGACATCTCGTCTTCCCCGATTTACACTGG
AACTGCCCTGACTACCACCAGCAGCAGCTTCCTCTTTTCCCCCTTCTCTG
TTTCTGAGGAGGAGCAGGCATTACTGCAGCAGGACGAGCAGGAGCAGCAG
CGGCAGAGAGAGTCATCGCCACAGGAGGAAAGCATCTCGGACTTCGATAT
GACTTCTCCACTTTCCACAAGCACCCGTCCCCACACCAGGAGCGGCGATA
ACAACGACAGTCGCAGCAGCAGCAGCAGCAGTGAAGAAACGACGACGTGG
TTACTCTCTCATGATATTCTTCAAACGGCCTTGGCCTCCTCTCCTTTTGC
CATACGACATCGTACACTTCGCTCGGGTCGTTCCTCCCCCCCTCCTGCTT
TTGCTCCCTCCTCCTCCACCTCCATCAGCACCAACGACAGCAGCAGCAGC
GGTAGCAGTACTGTCCTGCGCACCTCCACAACTTCCCTATCTCGCCCGTC
CACTACCACTATCTTCACACCCAACCGCCATTTCTCTTTCAACAAGCGCT
TCCTCCCTCTCTCCCTTCCCCATCTCATCTGCTCCGCCCTTTGGGCATGC
TTGCACGTCGCTATCCTTTGCCTGGTCACGACGAGCTTTTATTTATTGGG
ACGTACCTCGGCGCTACCTGCCGGGGAGATGGAGGTGTGTGGAGCAGCAA
GGGGGTTTCTATTTGCGCTTGCGATGGGATTTGGGGGGTATCTTGTCCTA
GCGGCCTGGCTGTGGGTGGAGAAAGAGAGGTCATTTAGGGACGATCCCGA
GGAGCATGAGTTGAAGGGGCTGTGGCTTTTGAGAACCTTGGCTTGTTTGA
TGGTGATTAGTTTTGTGTGGGGGGTGATGGTGCTGAGGGAGGGAGGGAGG
GAGGGCGGACGGACGGGAGGGGGGTGTTGGGCCAGTCAGGGACAGTTGCA
TGAGTGTGTAGTGGCATTTGTTTTATTGGGATCAATGTTGCTGTTTGTGG
CGGCGTTTTTGCACTGGATGGCGACAGGGAGGTGGGCGTTGGTATCAGTA
GGCCAGGTGGCACAGGGGGTAGCAGAGACGTGTAGATTGTGTCTCAGTTT
GCTTCTTAGGTTGGCGCCCCATCAGAAACTGTTGAAAGCACAGGAGAAGC
GGAAGGAGAGAGCATGTCGGGTGAAAGAGAGGGTAGAGGGGAGGGAGGAA
GGAAGGCGAGAAATGTTCTCGTCGCCGGCAAATGAGATGACGATTCAGGT
GGCGGAGGAATTGTCGTTGTTGCCCTTTTTTCATATTAGGGTGATTGAAG
GAAGAAGAAGTGGAGGCGGAGATGGAGGAGGGATCGCGAGTGAAGAAGCA
CCACGGGGAGGTGAAAGGACAACGCTTGCATCTCCGTCAGCTTTATATCG
TAATAGACAGTACATAGAAGACAACGACGAAGAAAGCAAGCAGCAGCAGC
TGATGCAGGCGCATGGGATCACATCACAGCTCCCGCCGCGAGCCTTGCCG
TACACTCCTCCTCTCACTATTACCACACCCATTGGTCGCGTTATCGGTCG
TCGCAAGAGCAATGATGCTCAATCTCATCACCACACCCATCAGGAGCAGG
AGCAGGAGTGGGAGCGGGAGCAGCGACGGCCACGGAGCCGTCTGGGGTTA
TGCTTAGGTGTTGACGATGATGAGAAGAAGGAGGATAAGAAAAGTGATAA
TGAGGACGAGGTCGATTTACCTGCTGCCGTGCAGGTGTCGTTGACTCCTG
GGGAAGAGGAAGAGGATTGCGAAGGGGCCTTTCATTATTACCAGACTCCG
CGTCCGTTAGTGTTGGGTGCGACTTTAAATTCGATCTTTGATGTGACGCC
TTTATCTCTCAGTCCTTTGCGGCCTCGGTCGGCCATTGCGATGGGAGAGA
CAGGAGGCTTGTATCTCACTGAAGACGGGGGGGCAGAAGGAGAAGGAAGA
CGGCACACTGAGCAAGGGAACACGTGCTGCCCGCTCCCACCGTTGCAGGT
GTGAGACCAGCAGCGATAGGCACAGGATTTGACAGGTTCTTAAACTAACG
CGAGCAATCTAGTTATTGATGGTAAAAGTTGAAGTGGAGGAGCACCTCGT
TTACCAGAATGTGTAGGTTGTAAAGCAAGACAGATGAATGGAGACTCTCA
CATGAAAAAATCGTGTCAATGGTTAAGAGATTACAAGGAAAGAAGCATGG
TAGGAAAAAATTGCATACGCGGCACCAAAGGAAGACACTCTAAAACACGT
C
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protein sequence of NO03G01280.1

>NO03G01280.1-protein ID=NO03G01280.1-protein|Name=NO03G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=985bp
MLRPPPSRVSFSPSYQWSSPSEQYWRAFIEKFHQHAGSPSTKETCLLLLD
VGLVLVFCIGAWGVRQSLSSPHSPTSNTIVIGGTCRDMTAYVLVLTVGLG
LYLLQNILHRLQRRLLIAVWQQTYRQSYGEKTQHLQEANEMEPVQQGRQR
WQYEEQHDSPIHSFASSKPPFSSCSSSEVQAEDVVAHVRGLQRLEGLRNH
SIPGLPMLFLFSWIYAGAVDLQSGCIARYPALGAAYHVFSWAGYLSAVVC
LVLLIIQCVCLTAEDTDSPPWASTSSSLSGAGTGADATTARLALHALATT
QWLVPVRRAIALVLGPLSLLLPTDDISSSPIYTGTALTTTSSSFLFSPFS
VSEEEQALLQQDEQEQQRQRESSPQEESISDFDMTSPLSTSTRPHTRSGD
NNDSRSSSSSSEETTTWLLSHDILQTALASSPFAIRHRTLRSGRSSPPPA
FAPSSSTSISTNDSSSSGSSTVLRTSTTSLSRPSTTTIFTPNRHFSFNKR
FLPLSLPHLICSALWACLHVAILCLVTTSFYLLGRTSALPAGEMEVCGAA
RGFLFALAMGFGGYLVLAAWLWVEKERSFRDDPEEHELKGLWLLRTLACL
MVISFVWGVMVLREGGREGGRTGGGCWASQGQLHECVVAFVLLGSMLLFV
AAFLHWMATGRWALVSVGQVAQGVAETCRLCLSLLLRLAPHQKLLKAQEK
RKERACRVKERVEGREEGRREMFSSPANEMTIQVAEELSLLPFFHIRVIE
GRRSGGGDGGGIASEEAPRGGERTTLASPSALYRNRQYIEDNDEESKQQQ
LMQAHGITSQLPPRALPYTPPLTITTPIGRVIGRRKSNDAQSHHHTHQEQ
EQEWEREQRRPRSRLGLCLGVDDDEKKEDKKSDNEDEVDLPAAVQVSLTP
GEEEEDCEGAFHYYQTPRPLVLGATLNSIFDVTPLSLSPLRPRSAIAMGE
TGGLYLTEDGGAEGEGRRHTEQGNTCCPLPPLQV*
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Synonyms
Publications