NO03G01240, NO03G01240 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G01240
Unique Name	NO03G01240
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3173
Alignment location	chr3:381364..384536 -

Link to JBrowse

Properties


Property Name	Value
Description	Telomerase-binding protein est1a

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:381364..384536 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom
IPR018834	DNA/RNA-bd_Est1-type

Homology

[Close]

BLAST of NO03G01240 vs. NCBI_GenBank
Match: EWM29514.1 (telomerase-binding protein est1a [Nannochloropsis gaditana])

HSP 1 Score: 411.4 bits (1056), Expect = 7.900e-111
Identity = 307/752 (40.82%), Postives = 391/752 (51.99%), Query Frame = 0

Query:    4 INVLARGTTPATAASGDSIERRFGSQLKRTLRLLHHDAYLHQQQQKHPFSVDVLTELPKAWAMLTKARQALAAEYLTQLTRHASSPSASFPAXXXXXXXXXXXXXXXXXXXXXXKGLGNRLWLLFYKEIEPLQSKLRAGPAREMDATPAEQRAQERALWKGRLEAVMLEGARLLTRALGEIQAAGSEEEGREGVMNNNNEESVAVMVALGDLARYAGRMMDAVKDYENTLKCLEQAEGWYMQAVQTRPGHGRAYNQLAIMATLKSQDVGEREVLTAAFNYTRALLADGEPFAAKDNLIALLDRWRRAHEAAVSAATKAKSLEWLRQARAEGNGTEIEKKSIGRVGGKMKTMGXXXXXXXXXXXXXXXXXXXKRTAFLQALLKGLHMVYTRVDLDALPSHAHLVGLHLATLAQSFHPLPGKSKQ-----AMNTQQRNDLKKNRSARHPMGKDXXXXXXXXXXXXXXXXXXXXDAAVELCELHSVYMQAVVVVTGALWARAEAVGLF----------------SSTSXXXXXXXXXXXXXXXXXXXXXXPADVKGALALVMEIGLALAKKRKGSKGRWDEGSGPALLLLLQWLEVNQGWLSILPEGNRTHEVVKTAWASV----GRGVGMGGKECGSGRERGEVVEEKEEQGEGKVEEKRRVSEEEQAVLGVRGF--WRS------KKEGQKTMLLAQRQLLMGQDKGGRRGGRDTQV-RCRRLLLSLERWTERA-----QGACCDAEEGKHAR 717
            + ++ RGT   +A +   IERR+ SQLKRTL LL HD  + +Q+Q+ P S+DV T LPK W+ +T+AR+ALA EY+T LT H S  + +                         KGLGNRLWLLFYKEIE LQSKLR   + + +   AE     RALWK RLEAVMLEGA +LT AL  ++ A S        ++ + E+SVA+MVALGDLARYAGRMMDA +D E T KCLE+AE WY+QA +TRPG GR YNQLAI+ TLKS+ VGE EVLTAAF YTRA LA  EPF A++NLIALLDRWRR HE+A++AATKAKSL WLRQ+ +   G    K      G    T+                        FL ALLK LHM+Y RVDLDA+P+ AH VG  L TLAQ       K K+     A    Q  D +   +  HP+                        A+ E   + ++  + VVVVTGALW RAEA GLF                                          PADV+GALALVME+GLALA + +GSK  WD G GPAL+LLL+WL  NQ W+  LP G RT  +   A + +    G+ V  G      G   G+       +G G+  E    +     + G+RGF  W         +E   T+   +     G+D G +   R+  +  C+  L +L+    RA         C+ E+    R
Sbjct:    3 VPLVPRGTRLPSADT--MIERRYRSQLKRTLELLDHDPQVCRQRQRVPSSIDVHTALPKVWSQVTEARKALAVEYITHLTDHDSDNTRA------------------------SKGLGNRLWLLFYKEIEALQSKLRTPASGDGEGEGAEM----RALWKKRLEAVMLEGASVLTEALQNVRKASSNG------VDVHGEDSVALMVALGDLARYAGRMMDAARDGERTQKCLEEAEEWYVQAAKTRPGFGRTYNQLAIVCTLKSRRVGEGEVLTAAFEYTRAFLAATEPFPAQENLIALLDRWRRLHESALNAATKAKSLAWLRQSTSRQKGGGHGK------GDPTSTLSPD-------------------KVFLHALLKTLHMIYNRVDLDAVPACAHQVGQALVTLAQGLATPSRKKKKESDRGAEIVAQTLDRQNLGTGAHPLSSPALGSEEPAVWSGTKGLGPGVHAS-EPHAMGTLCARVVVVVTGALWTRAEAAGLFLRGREVDDACHNRNGLPVPPTPANSGASPYPEARAAGRSKKPPADVRGALALVMEVGLALANRGEGSKEGWDVGKGPALVLLLRWLCANQAWVEGLP-GERTEAIAGLARSRLREERGKRVVEGENGDDWGGNGGDGTPGVVPEGVGR-RELPSSAGHGLVLAGLRGFGSWEEGMGGGVDRESLGTVQEREDTRRNGEDDGEKGWKRERDMAACQYWLQALDLKKSRAAVHRIHQKSCEEEDNNSVR 690

[Close]

BLAST of NO03G01240 vs. NCBI_GenBank
Match: XP_009839385.1 (hypothetical protein H257_13536 [Aphanomyces astaci] >ETV71139.1 hypothetical protein H257_13536 [Aphanomyces astaci])

HSP 1 Score: 75.1 bits (183), Expect = 1.300e-9
Identity = 61/186 (32.80%), Postives = 91/186 (48.92%), Query Frame = 0

Query:  120 LGNRLWLLFYKEIEPLQSKLRAGPAREMDATPAEQRAQERALW-KGRLEAVMLEGARLLTRALGEIQAAGSEEEGREGVMNNNNEESVAVMVALGDLARYAGRMMDAVKDYENTLKCLEQAEGWYMQAVQTRPGHGRAYNQLAIMATLKSQDVGEREVLTAAFNYTRALLADGEPFAAKDNLIALL 305
            L  RLW+ +YKEI+PLQ+KLR         +P    A E A   +  + AV+          L  +  A S +  R GV    +   +   VALGD+ARY+  M           +    AE +Y QA +  P +G+ YNQLA++A      + + + L AA+ Y+R+ LA   PF+++ NL A L
Sbjct:  240 LNERLWMNWYKEIDPLQAKLRG------SLSPTSSHAGESASHVRDAMAAVLATCTAFYNTLLLRLTGAMSTQRERGGVTTLRHSIHM-TFVALGDVARYSQNMQ------PKATRSWRVAENYYHQAQRHNPSNGKVYNQLALLA------LHQNQTLEAAYYYSRS-LACATPFSSRTNLQATL 405

[Close]

BLAST of NO03G01240 vs. NCBI_GenBank
Match: XP_008869594.1 (hypothetical protein H310_06350 [Aphanomyces invadans] >ETW01746.1 hypothetical protein H310_06350 [Aphanomyces invadans])

HSP 1 Score: 65.9 bits (159), Expect = 8.100e-7
Identity = 58/185 (31.35%), Postives = 83/185 (44.86%), Query Frame = 0

Query:  120 LGNRLWLLFYKEIEPLQSKLRAGPAREMDATPAEQRAQERALWKGRLEAVMLEGARLLTRALGEIQAAGSEEEGREGVMNNNNEESVAVMVALGDLARYAGRMMDAVKDYENTLKCLEQAEGWYMQAVQTRPGHGRAYNQLAIMATLKSQDVGEREVLTAAFNYTRALLADGEPFAAKDNLIALL 305
            L  RLW+ +YKEI+PLQ KLR              R    AL    L         LL R      A+ S  E R G    ++       VALGD+ARY   ++          +    AE  Y  A++  P +G+ YNQLA++A      + + + L A + Y+R+ LA   PF A++NL+  L
Sbjct:  251 LNERLWMSWYKEIDPLQGKLRGAAPHAGGHVSQHLRDAVTAL----LATCTAFYTNLLMRL---TNASSSSNEVRRGHATTHSIH--MTYVALGDVARYGQGLLPKAS------RSWRMAETQYHHALRYNPSNGKVYNQLALLA------LHQNQTLDAVYFYSRS-LACATPFCARENLLTTL 413

The following BLAST results are available for this feature:

BLAST of NO03G01240 vs. NCBI_GenBank

BLAST of NO03G01240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3


Match Name	E-value	Identity	Description
EWM29514.1	7.900e-111	40.82	telomerase-binding protein est1a [Nannochloropsis ...	[more]
XP_009839385.1	1.300e-9	32.80	hypothetical protein H257_13536 [Aphanomyces astac...	[more]
XP_008869594.1	8.100e-7	31.35	hypothetical protein H310_06350 [Aphanomyces invad...	[more]

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL070	nonsL070	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR000	ncniR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR053	ngnoR053	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK005786	NSK005786	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO03G01240.1	NO03G01240.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|2601	gene_1300	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100006g58	gene1068	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO03G01240.1	NO03G01240.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO03G01240 ID=NO03G01240|Name=NO03G01240|organism=Nannochloropsis oceanica|type=gene|length=3173bp
CAGGACAGAGCGATGGAGTGGCACGGGGCTCTGGGCACGACATCACCTGG
GGCCAAAATGGCAGTAgtacgtgttgtggcacatgatgagtttgtgacga
tgggctcctggctggttgtactctcctcctcccgctcccaatagcgccct
gtttaacttaccgacgccaccacatccacagGTCACCAACGGCCCTGCCT
CCAATATGGGCTCGTGATAAACCAGTTGACCCCCTTCCTTCACCACCACC
GGTCATGACGATCATCAATGTGCTTGCACGCGGCACTACGCCGGCCACCG
CAGCAAGCGGCGACTCTATAGAGCGGCGCTTTGGGTCCCAACTCAAGCGG
ACCCTCCGTCTCCTTCACCACGACGCCTACCTCCACCAACAGCAGCAGAA
GCACCCATTTTCTGTTGATGTCCTAACAGAGTTGCCCAAAGCATGGGCAA
TGCTGACCAAGGCTCGCCAAGCACTGGCAGCAGAGTACCTTACGCAGCTT
ACGCGCCATGCTTCCTCCCCCTCCGCTTCCTTCCCCGCCACCACCAACTC
ATTCTCATCATCATCATCATCATCACCACCACCACCGTCATTATCCGCGC
CTCCTAAAGGGCTGGGTAATCGTCTCTGGCTCTTGTTCTACAAAGAAATT
GAGCCTCTCCAAAGTAAACTCCGGGCGGGTCCCGCGCGAGAGATGGACGC
AACGCCCGCGGAGCAGCGCGCTCAAGAACGCGCCTTGTGGAAGGGGCGAC
TGGAAGCTGTCATGTTGGAGGGAGCAAGGCTATTGACAAGGGCATTGGGA
GAAATCCAAGCAGCAGGATCAGAGGAGGAAGGAAGAGAAGGGGTGATGAA
TAATAATAATGAGGAGTCAGTAGCAGTAATGGTTGCTCTGGGCGACCTTG
CCCGATATGCAGGGCGGATGATGGACGCTGTGAAAGACTATGAGAACACG
CTTAAGTGTTTGGAGCAGGCGGAGGGATGGTACATGCAGGCCGTGCAAAC
TCGGCCGGGGCACGGTCGAGCATACAACCAACTAGCAATCATGGCCACCT
TGAAATCGCAAGACGTCGGGGAAAGGGAGGTATTAACCGCAGCATTCAAT
TATACCCGTGCCTTACTTGCGGATGGGGAGCCGTTTGCTGCAAAGGACAA
TCTGATTGCGTTGTTGGACCGATGGAGGCGAGCGCACGAAGCGGCCGTCA
GTGCAGCGACGAAGGCGAAATCCCTGGAGTGGCTGCGGCAGGCACGAGCG
GAAGGGAATGGTACAGAAATTGAAAAGAAATCCATCGGTAGGGTTGGAGG
GAAAATGAAAACCATGGGTGGGAGTGGTGGTGGTGGTGTTCCCACTGCTG
CTGCTGCGACGGGCCAAAGGGAAGAGAAGCGGACGGCTTTTTTGCAAGCC
CTTCTGAAGGGTTTACACATGGTTTACACCCGGGTGGATCTCGATGCTCT
TCCCTCCCACGCTCACCTTGTTGGACTGCACCTTGCAACGCTGGCGCAGT
CCTTCCACCCCCTCCCTGGAAAGAGCAAGCAGGCGATGAACACACAGCAG
AGGAACGACCTGAAGAAGAATCGAAGTGCACGACACCCTATGGGTAAAGA
CGAGGACGAGAAGGAGAATCAGGAGGAGGACGATGGGGGAGGGTGGGGAG
AAGCGGCGGCGGATGCCGCCGTAGAGCTGTGTGAGCTTCATTCTGTGTAT
ATGCAAGCTGTGGTGGTAGTGACAGGAGCGCTCTGGGCACGAGCAGAGGC
AGTAGGTCTGTTCTCCTCTACGTCCTACACCACCACCATCACCACCCCCC
AATTTCAACAGCGACAGCAACAGCACCAACAGCACAAGCCACCTGCTGAC
GTGAAAGGGGCTCTTGCGCTCGTCATGGAGATCGGCCTCGCCCTCGCCAA
AAAGAGGAAAGGCAGCAAGGGAAGGTGGGATGAAGGGAGTGGTCCGGCGC
TTTTGCTGCTGCTGCAATGGCTGGAGGTGAACCAAGGTTGGTTGTCCATC
TTGCCGGAGGGAAATAGAACACACGAGGTGGTGAAGACGGCGTGGGCGAG
TGTGGGGCGGGGAGTAGGGATGGGAGGGAAGGAATGTGGGAGTGGACGGG
AGAGAGGGGAGGTGGTGGAGGAGAAGGAAGAACAGGGGGAGGGCAAGGTG
GAGGAGAAGCGTCGTGTGTCGGAGGAGGAACAGGCAGTCTTGGGTGTGAG
GGGATTTTGGAGGTCAAAAAAGGAAGGACAAAAGACGATGCTACTAGCAC
AGCGGCAGCTTTTGATGGGACAAGACAAGGGAGGAAGGCGTGGAGGGAGG
GACACGCAGGTGCGATGTCGTCGTTTGCTTTTATCACTGGAGCGCTGGAC
GGAACGCGCACAGGGCGCCTGCTGTGATGCTGAAGAAGGGAAACATGCAC
GCCTGGATCCCCAGGGAGAAGGGACGGTGGCGGCCGTAGGGAACGGTCAC
GCGCCGTTAGAAGCAACGTCAGCCAAAGCTACATCGTTGTCCTGGCAGTC
CATCACCCCTTCCTCCTCCTCCTCCTCCTCCTCCTTATCCCCCCCCTCCT
CTTCCTCGAACCTGTCTTCCGCAGACTTAGCCACATCTATGGCCTCTCTC
GTCCTCTCTTCTTCTGACCCCCGACCACCTAGCGGCATCCACCCCGCCCG
CTCCTCCTCACTCTCCTTATCCGCCGCCGCCTCCTCGAATTCCTCCTCCT
CTCTCTTTTCTTCCTTCTCCCTCTTCTCTTCTCCGCTCATCACCTCCCTC
CCTCCCTCCACCCCTCCTTCTCCTCCTCCTCCTCCTCCTCTTCCCATGTG
TCCTTCTTGCTCCAATTTCATTGAGGCTGAGGTCATCCATCACACCGACG
CTTGCTGCGAGTGGTGTGGCCATGTCTTTAACAAACAACACCAGCAACAG
CACCACTACCACCACCACCACCAGCAGCAGCAGCACCAGCATCGGGATAC
GTCAGCAGCGGCGGCGGCGGCGGCGTCTGCTGCTACTGCTGCTGGATTCA
CTCCGACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCGGTGTGTCTCAAGTTATGGATTACCCGGGGTCGATTTT
CTTGTCCTGTTTGGCATCGTCTTCCTCGCACCTTCCTGCCGGAGGAGGGC
TTGCACGGCCTCCCGGGCTGTAA

protein sequence of NO03G01240.1

>NO03G01240.1-protein ID=NO03G01240.1-protein|Name=NO03G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=973bp
MTIINVLARGTTPATAASGDSIERRFGSQLKRTLRLLHHDAYLHQQQQKH
PFSVDVLTELPKAWAMLTKARQALAAEYLTQLTRHASSPSASFPATTNSF
SSSSSSSPPPPSLSAPPKGLGNRLWLLFYKEIEPLQSKLRAGPAREMDAT
PAEQRAQERALWKGRLEAVMLEGARLLTRALGEIQAAGSEEEGREGVMNN
NNEESVAVMVALGDLARYAGRMMDAVKDYENTLKCLEQAEGWYMQAVQTR
PGHGRAYNQLAIMATLKSQDVGEREVLTAAFNYTRALLADGEPFAAKDNL
IALLDRWRRAHEAAVSAATKAKSLEWLRQARAEGNGTEIEKKSIGRVGGK
MKTMGGSGGGGVPTAAAATGQREEKRTAFLQALLKGLHMVYTRVDLDALP
SHAHLVGLHLATLAQSFHPLPGKSKQAMNTQQRNDLKKNRSARHPMGKDE
DEKENQEEDDGGGWGEAAADAAVELCELHSVYMQAVVVVTGALWARAEAV
GLFSSTSYTTTITTPQFQQRQQQHQQHKPPADVKGALALVMEIGLALAKK
RKGSKGRWDEGSGPALLLLLQWLEVNQGWLSILPEGNRTHEVVKTAWASV
GRGVGMGGKECGSGRERGEVVEEKEEQGEGKVEEKRRVSEEEQAVLGVRG
FWRSKKEGQKTMLLAQRQLLMGQDKGGRRGGRDTQVRCRRLLLSLERWTE
RAQGACCDAEEGKHARLDPQGEGTVAAVGNGHAPLEATSAKATSLSWQSI
TPSSSSSSSSLSPPSSSSNLSSADLATSMASLVLSSSDPRPPSGIHPARS
SSLSLSAAASSNSSSSLFSSFSLFSSPLITSLPPSTPPSPPPPPPLPMCP
SCSNFIEAEVIHHTDACCEWCGHVFNKQHQQQHHYHHHHQQQQHQHRDTS
AAAAAAASAATAAGFTPTSSSSSSSSSSSSSSSSSSGVSQVMDYPGSIFL
SCLASSSSHLPAGGGLARPPGL*

Synonyms

Publications