NO03G01220, NO03G01220 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G01220 vs. NCBI_GenBank
Match: EWM29542.1 (Mpv17/PMP22 [Nannochloropsis gaditana]) HSP 1 Score: 429.9 bits (1104), Expect = 7.900e-117 Identity = 263/354 (74.29%), Postives = 287/354 (81.07%), Query Frame = 0 Query: 1 MAGASSRRSISLLQLLMIPMASCLAFAGVLPLSSLHLRGQGLSMVRGSPYC---GIGVRADAGRSTSRSLPRGRSFFLSVLRTQSCLHSSRDEEQQIDKQGHSNAWIEKGGLGLVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLVAALGTFKSLWGQYAELLESKPVVTKAITAGLIALFGDMLAQLFEYKLACRRLAEGEEAPPMKLDFLRCLAVTIEGVVITGPGLHYLYTALETWMPAQKGALAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKNLRTDIVPQVQREYWSALKGGWGVSLLFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHLKEV 352 MA S R L QLL++PMASC+AFAG LP S+LH M R SP GIGV GRS RG +F S R + +Q +G S +W+ +GGLGLVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LL+AALGTFKSLWGQYAELLESKPV+TKAITAGLIALFGD+LAQ+FEYKL CRRLA+GEE P L+FLRCLAVTIEGVVITGPGLHYLYTALE+WMPAQ+G LAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGK+L DI PQVQREYWSALKGGWGVS++FLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREH++EV Sbjct: 1 MAPGVSGRKCPLFQLLVLPMASCVAFAGHLPSSALHTSMGAAGMAR-SPLLVPHGIGV---GGRSCHSLGRRGPAFLPSQYRRNYFKMRTLGRQQSSSPRG-STSWLTQGGLGLVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLLMAALGTFKSLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHVREV 349
BLAST of NO03G01220 vs. NCBI_GenBank
Match: CBN75087.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 183.0 bits (463), Expect = 1.700e-42 Identity = 89/191 (46.60%), Postives = 124/191 (64.92%), Query Frame = 0 Query: 156 SLWGQYAELLESKPVVTKAITAGLIALFGDMLAQLFEYKLACRRLAEGEEAPPMKLDFLRCLAVTIEGVVITGPGLHYLYTALETWMPAQKGA-LAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKNLRTDIVPQVQREYWSALKGGWGVSLLFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHR 346 ++WG YA L P+V KA+T+G++ L GDM AQ FE+ ++ AE P + R AV I+ ++ITGP LH LY LE +P G + A HV +D F+FDP+FV FF + G++E + LR I+P ++RE+W A++G W VSLLF PL+FATFR LPL RVL VN D+ WT+V+S+F H+ Sbjct: 184 AMWGMYAAWLRRSPLVAKAVTSGVLGLSGDMAAQFFEF----QQKAESGRRGPFLKNNRRLTAVAIDSILITGPALHALYGLLECLIPTVGGGFVPAALHVVIDTFVFDPMFVASFFCVTGMLESRPLRKSILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHK 370
BLAST of NO03G01220 vs. NCBI_GenBank
Match: CBN77549.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 131.3 bits (329), Expect = 5.800e-27 Identity = 77/191 (40.31%), Postives = 105/191 (54.97%), Query Frame = 0 Query: 162 AELLESKPVVTKAITAGLIALFGDMLAQLFEYKLACRRLAEGEEAPPMKLDFL--RCLAVTIEGVVITGPGLHYLYTALETWMPAQKGALAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKNLRTDIVPQVQREY-----WSALKG-GWGVSLLFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGH 345 A L++ PV+TK+I++G I L GD+LAQ EY G PP K + R AV I+G++I GP LHY Y LE+ MPA LAA T V VD + DP+F F + GLIEG+++R +I+P + Y W + G GW P++ F P++ RVL +L D+VWT V S F H Sbjct: 7 ASALDAYPVLTKSISSGFIGLLGDVLAQWVEYLF-------GAAFPPWKTTAMVWRSCAVMIDGLLINGPLLHYAYEMLESRMPAGDSILAAMTQVCVDVLVIDPVFAFMFVWSTGLIEGRSVRGEILPTIVHHYPTLVLWLIVIGVGWA------PIQIYLFNRYPVQYRVLTADLIDLVWTCVSSLFSH 184
BLAST of NO03G01220 vs. NCBI_GenBank
Match: XP_002176522.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50985.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 126.7 bits (317), Expect = 1.400e-25 Identity = 78/214 (36.45%), Postives = 104/214 (48.60%), Query Frame = 0 Query: 161 YAELLESKPVVTKAITAGLIALFGDMLAQLFEYKL------------AC----------------RRLAEGEEAPPMKLDFLRCLAVTIEGVVITGPGLHYLYTALETWMPAQKGALAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKNLRTDIVPQVQREYWSALKGGWGVSLLFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHRE 347 Y L PV+TK+ TA LI GD +AQ EYKL +C R A + D R L++ +G++I+GP +H+ Y E +P LAA HV D + D +FV F + GL EG + + ++ +Y S LK WG SL +PLEF FR LP+ LRVL VN DVVW AV+SF HR+ Sbjct: 73 YMTQLALYPVLTKSATAALIGYIGDYMAQWLEYKLEQNHQKGVIGGGSCDGTQQHHKISLNSSNSRVSARSNLSIHGTYDLRRGLSIMTDGLLISGPLMHFGYAFFEHLVPVSTSPLAAMLHVIADSILLDSIFVATTFLVTGLFEGYRWQ-HLSSHLRSDYSSTLKASWGTSLALMPLEFVCFRYLPVSLRVLAVNFIDVVWDAVISFMVHRK 285
BLAST of NO03G01220 vs. NCBI_GenBank
Match: GAV82175.1 (Mpv17_PMP22 domain-containing protein [Cephalotus follicularis]) HSP 1 Score: 115.9 bits (289), Expect = 2.500e-22 Identity = 70/195 (35.90%), Postives = 108/195 (55.38%), Query Frame = 0 Query: 156 SLWGQYAELLESKPVVTKAITAGLIALFGDMLAQLFEYKLACRRLAEGEEAPPMKLDFLRCLAVTIEGVVITGPGLH--YLYTALETWMPAQKGALAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKNLRTDIVPQVQREYWSALKGGWGVSLLFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHL 349 SL Y LE PV+TKA+T+ L+ L GD++ QL ++ P LD R T+ G+V+ GP LH YLY + MP GA AF + +D+F+F P+F+ F +EGK + +VP++Q+E++SA+ W L++P +F FR +P +L+VL N+ +VW ++SF H+E L Sbjct: 122 SLLSWYLARLEKYPVLTKAVTSALLTLIGDLICQLVI-----------DQVP--SLDLKRTFQFTLLGLVLVGPTLHFWYLYLSKLVTMP---GASGAFLRLILDQFLFSPMFIGIFLSTLMTLEGK--PSQVVPKLQQEWFSAVLANW---QLWIPFQFLNFRFVPQQLQVLAANVVALVWNVILSFKAHKEIL 295
BLAST of NO03G01220 vs. NCBI_GenBank
Match: XP_008392512.1 (PREDICTED: protein sym-1 [Malus domestica]) HSP 1 Score: 115.2 bits (287), Expect = 4.300e-22 Identity = 70/196 (35.71%), Postives = 108/196 (55.10%), Query Frame = 0 Query: 156 SLWGQYAELLESKPVVTKAITAGLIALFGDMLAQLFEYKLACRRLAEGEEAPPMKLDFLRCLAVTIEGVVITGPGLH--YLYTALETWMPAQKGALAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKNLRTDIVPQVQREYWSALKGGWGVSLLFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHLK 350 SL Y +LL PV TKA+T+ L+ L GD++ QL ++AP LD R T+ G+V+ GP LH YLY + MP GA AF + +D+F+F P+F+ F +EGK R+ +VP++Q+E++SA+ W L++P +F FR +P + +VL N + W ++SF H+E L+ Sbjct: 131 SLLSWYLDLLAKYPVATKALTSALLTLTGDIVCQLVI-----------DKAP--YLDLKRTFLFTLLGLVLVGPTLHFWYLYLSKLVTMP---GASGAFLRLVLDQFLFAPIFIGVFLSTLMTLEGK--RSQVVPKLQQEWFSAVLANW---QLWIPFQFLNFRFVPQQFQVLTANFISLTWNVILSFKAHKEVLQ 305
BLAST of NO03G01220 vs. NCBI_GenBank
Match: XP_008240607.1 (PREDICTED: protein SYM1 [Prunus mume] >XP_008240609.1 PREDICTED: protein SYM1 [Prunus mume]) HSP 1 Score: 114.0 bits (284), Expect = 9.600e-22 Identity = 66/195 (33.85%), Postives = 107/195 (54.87%), Query Frame = 0 Query: 156 SLWGQYAELLESKPVVTKAITAGLIALFGDMLAQLFEYKLACRRLAEGEEAPPMKLDFLRCLAVTIEGVVITGPGLHYLYTALETWMPAQKGALAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKNLRTDIVPQVQREYWSALKGGWGVSLLFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHLKE 351 SL Y +LL PV TKA+T+ + L GD++ QL ++AP LD R T+ G+V+ GP LH+ Y L + GA AF + +D+FIF P+F+ F +EGK+ + +VP++Q+E++SA+ W L++P +F FR +P + +VL N ++W ++SF H+E L++ Sbjct: 134 SLLSWYLDLLAKYPVSTKALTSAFLTLIGDVICQLVI-----------DKAP--DLDLKRTFLFTLLGLVLVGPTLHFWYLYLSK-LVTTPGASGAFQRLLLDQFIFSPIFIGVFLSTLMTLEGKS--SQVVPKLQQEWFSAVLANW---QLWIPFQFLNFRFVPQQFQVLAANSIALIWNVILSFKAHKEVLQK 309
BLAST of NO03G01220 vs. NCBI_GenBank
Match: GAX13394.1 (hypothetical protein FisN_9Lh016 [Fistulifera solaris]) HSP 1 Score: 113.6 bits (283), Expect = 1.300e-21 Identity = 64/191 (33.51%), Postives = 100/191 (52.36%), Query Frame = 0 Query: 161 YAELLESKPVVTKAITAGLIALFGDMLAQLFEYKLACRRLAEGEEAPPMKLDFLRCLAVTIEGVVITGPGLHYLYTALETWMPAQKGALAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKNLRTDIVPQVQREYWSALKGGWGVSLLFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHLKEV 352 Y L ++P++TK+IT+ ++ GD +AQ +E+ + R LA +EG++ +GP +H Y+ E +P A HV +D + D +FV F++ GL+EG + + + Q QR+ LK W SL LP+E FR LP+ RVL VN+ D+VW V+SF H+ KE+ Sbjct: 90 YTLWLTTQPLLTKSITSAVMGCVGDAVAQRWEHHPIYSK--------------RRGLAAMVEGLLWSGPLMHRAYSLFEHILPVGNNMGFALIHVLLDSLLLDSVFVTSAFWITGLLEGFSFK-QLRQQYQRDIGGTLKASWLTSLFLLPVEVVCFRYLPVTYRVLAVNVLDIVWDTVISFMSHKTRGKEL 265
BLAST of NO03G01220 vs. NCBI_GenBank
Match: XP_021822191.1 (protein SYM1 [Prunus avium]) HSP 1 Score: 113.2 bits (282), Expect = 1.600e-21 Identity = 65/195 (33.33%), Postives = 107/195 (54.87%), Query Frame = 0 Query: 156 SLWGQYAELLESKPVVTKAITAGLIALFGDMLAQLFEYKLACRRLAEGEEAPPMKLDFLRCLAVTIEGVVITGPGLHYLYTALETWMPAQKGALAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKNLRTDIVPQVQREYWSALKGGWGVSLLFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHLKE 351 SL Y +LL PV TKA+T+ + L GD++ QL ++AP LD R T+ G+V+ GP LH+ Y L + GA AF + +D+FIF P+F+ F +EGK+ + +VP++Q+E++SA+ W L++P +F FR +P + +VL N ++W ++SF H+E +++ Sbjct: 134 SLLSWYLDLLAKYPVSTKALTSAFLTLIGDVICQLVI-----------DKAP--DLDMKRTFLFTLLGLVLVGPTLHFWYLYLSK-LVTTPGASGAFQRLLLDQFIFSPIFIGVFLSTLMTLEGKS--SQVVPKLQQEWFSAVLANW---QLWIPFQFLNFRFVPQQFQVLAANSIALIWNVILSFKAHKEVIQK 309
BLAST of NO03G01220 vs. NCBI_GenBank
Match: XP_024458669.1 (protein sym-1 [Populus trichocarpa] >XP_024458670.1 protein sym-1 [Populus trichocarpa] >PNT29483.1 hypothetical protein POPTR_006G032500v3 [Populus trichocarpa]) HSP 1 Score: 112.8 bits (281), Expect = 2.100e-21 Identity = 63/188 (33.51%), Postives = 104/188 (55.32%), Query Frame = 0 Query: 161 YAELLESKPVVTKAITAGLIALFGDMLAQLFEYKLACRRLAEGEEAPPMKLDFLRCLAVTIEGVVITGPGLHYLYTALETWMPAQKGALAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKNLRTDIVPQVQREYWSALKGGWGVSLLFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHL 349 Y LL PV+TKA+T+ ++ L GD++ QL ++AP LD R T G+V+ GP LH+ Y L + GA AF + VD+F+F P+F+ F +EG+ ++++P++Q+E++SA+ W L++P +F FR +P + +VL N+ +VW ++SF H+E L Sbjct: 129 YLNLLAKYPVLTKAVTSAILTLMGDLICQLVI-----------DQAP--SLDLKRTFVFTFLGLVLVGPTLHFWYLYLSK-LVTLPGASGAFLRLLVDQFVFSPIFIGVFLSTLVTLEGR--PSEVLPKLQQEWFSAVLANW---QLWIPFQFLNFRFVPQQFQVLAANVIALVWNVILSFKAHKEVL 297 The following BLAST results are available for this feature:
BLAST of NO03G01220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G01220 ID=NO03G01220|Name=NO03G01220|organism=Nannochloropsis oceanica|type=gene|length=4563bpback to top protein sequence of NO03G01220.1 >NO03G01220.1-protein ID=NO03G01220.1-protein|Name=NO03G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bpback to top Synonyms
Publications
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