NO03G01180, NO03G01180 (gene) Nannochloropsis oceanica

Overview
NameNO03G01180
Unique NameNO03G01180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3660
Alignment locationchr3:366737..370396 -

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Properties
Property NameValue
DescriptionCRAL-TRIO domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:366737..370396 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036865CRAL-TRIO_dom_sf
IPR001251CRAL-TRIO_dom
Homology
[Close]
BLAST of NO03G01180 vs. NCBI_GenBank
Match: EWM29608.1 (CRAL-TRIO domain protein [Nannochloropsis gaditana])

HSP 1 Score: 292.7 bits (748), Expect = 9.200e-76
Identity = 135/185 (72.97%), Postives = 166/185 (89.73%), Query Frame = 0 
Query:    5 RKEVSSPEPTPSSLTRNISSPSKKYRAKPLTKAEVTSNESLFYWRRQYDDMIHYIRESGITPEEADDDEAIRLLAEWNGNIKDAVLNGEKGREWKKANLPISRSEVMPTLKTGKFVFAGYDKVGRAVCYYRVKLHDPKKFTALESVRAVVYNYEQMLAEGKLRGAGEICVVVDRTDAKSSNMDIE 190
            +K+ ++  P+P S+TR ISSP++KYRAKPL+K +V SNESL +WR++Y+DMIHY+RESG++ E+ADDDE IRLLAEWNGN+KDAVLNGEKGR W+K NLPI R+EV+PTLKTGKFVFAGYDKVGRA+CYYRVK H+P++F  L+SV+AVVY YE+M AEG+LRGA EICVVVDRTDAKS+NMDIE
Sbjct:   15 KKDETTTGPSPVSVTRTISSPARKYRAKPLSKQDVISNESLHFWRKKYEDMIHYVRESGVSVEDADDDEVIRLLAEWNGNVKDAVLNGEKGRAWRKENLPIPRAEVLPTLKTGKFVFAGYDKVGRAICYYRVKFHNPRQFAPLQSVKAVVYLYEEMRAEGRLRGAEEICVVVDRTDAKSANMDIE 199
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BLAST of NO03G01180 vs. NCBI_GenBank
Match: OMJ80316.1 (hypothetical protein SteCoe_19471 [Stentor coeruleus])

HSP 1 Score: 71.2 bits (173), Expect = 4.400e-9
Identity = 40/137 (29.20%), Postives = 69/137 (50.36%), Query Frame = 0 
Query:   54 DMIHYIRESGITPEEADDDEAIRLLAEWNGNIKDAVLNGEKGREWK---KANLPISRSEVMPTLKTGKFVFAGYDKVGRAVCYYRVKLHDPKKFTALESVRAVVYNYEQMLAEGKLRGAGEICVVVDRTDAKSSNMD 188
            ++ H +      P   ++D  +R+L     N+  A+   ++  +W+   +A+  I+  E+MP +  GK  F G DK GR     RV+ H P+ FT  E++R  +Y  E  +      G+G+IC++ DR+D    N D
Sbjct:   16 ELKHTVENISDNPVFTNNDALLRILRAREFNVDAALAMWQRWVDWRISYRAD-SITEEEMMPHIVKGKAFFHGKDKQGRICLIIRVRHHYPQDFTPEETLRYSIYLAECAVKLADTEGSGQICIIYDRSDITDDNQD 151
[Close]
BLAST of NO03G01180 vs. NCBI_GenBank
Match: OMJ83991.1 (hypothetical protein SteCoe_14977 [Stentor coeruleus])

HSP 1 Score: 66.6 bits (161), Expect = 1.100e-7
Identity = 42/128 (32.81%), Postives = 63/128 (49.22%), Query Frame = 0 
Query:   64 ITPEE--ADDDEAIRLLAEWNGNIKDAVLNGEKGREWKKANL--PISRSEVMPTLKTGKFVFAGYDKVGRAVCYYRVKLHDPKKFTALESVRAVVYNYEQMLAEGKLRGAGEICVVVDRTDAKSSNMD 188
            IT EE   + D  IR+L   +  ++ A    +K   W+K      I+  E+   +KTGK  F G D  GR     R + H P +F   E++R V+Y  EQ +     +  G++CV+ DR D  S+N D
Sbjct:   25 ITDEEKYTNQDMLIRVLRARDLKVQPAYEMWQKWYRWRKDYRADEITEEEMKEHIKTGKAFFFGEDNEGRPCLIVRARYHWPNQFALEETMRYVIYLVEQGVKLADEKHTGQMCVIYDRGDISSANKD 152
[Close]
BLAST of NO03G01180 vs. NCBI_GenBank
Match: OMJ67334.1 (hypothetical protein SteCoe_35521 [Stentor coeruleus])

HSP 1 Score: 63.5 bits (153), Expect = 9.100e-7
Identity = 32/83 (38.55%), Postives = 45/83 (54.22%), Query Frame = 0 
Query:  105 ISRSEVMPTLKTGKFVFAGYDKVGRAVCYYRVKLHDPKKFTALESVRAVVYNYEQMLAEGKLRGAGEICVVVDRTDAKSSNMD 188
            I+  E+   +KTGK  F G D  GR     R + H P +F+  E++R V+Y  EQ +     R  G+ICV+ DR D  S+N D
Sbjct:   70 ITEEEMKEHIKTGKAFFFGEDNEGRPCLIVRARYHWPNQFSLEETMRYVIYLVEQGVKLADERHTGQICVIYDRGDISSANKD 152
The following BLAST results are available for this feature:
BLAST of NO03G01180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM29608.19.200e-7672.97CRAL-TRIO domain protein [Nannochloropsis gaditana... [more]
OMJ80316.14.400e-929.20hypothetical protein SteCoe_19471 [Stentor coerule... [more]
OMJ83991.11.100e-732.81hypothetical protein SteCoe_14977 [Stentor coerule... [more]
OMJ67334.19.100e-738.55hypothetical protein SteCoe_35521 [Stentor coerule... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005796NSK005796Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01180.2NO03G01180.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G01180.1NO03G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571629gene_1292Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g52gene1074Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01180.2NO03G01180.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G01180.1NO03G01180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01180 ID=NO03G01180|Name=NO03G01180|organism=Nannochloropsis oceanica|type=gene|length=3660bp
GAAAAATCGTTGGTCAGGAATTGCTTTGTTGCTCTATCTTCTTGCCGCTA
ATCAATATGGCGTCCGCAAAAACGCTTTTTCTCGCCATCGCTCCAACTCT
GTCTGCGAGGTGGAATTCCTGGGCAAGAGGGACGTCAGTCATTTTATGTA
TCGAAGTAATAATACAGTGCCTTTTGATTCCCATCATTTCATTTTCATGC
TCATTGCTTTCATTCATGTTTACTGTTATCATTCAGGTTGGCAGATGGCC
GACGGGAAACCCGTCTTACACTACACTAACACTAATTTGCATCCCCTACT
CATTTCAAAATATCCTGTCAAGGCGACGACTGTGCCATGACCCATGCCCC
TCTCATCTTCCTCTTCCTCAATCAATCGCTCAAACACGTCCATCCCTCCC
TTCCCCCTCCTCCACCTCGGCCCATCCTCGGCCAATCCACCACGCCTCCC
TTCGCACCCACACCCCTTCCCGGCCGCACGGGTAACAGCGTCCGTGCCGG
CGGTATCGTTAGATTCGAGTCACCAAAGCTCAAAAAGCGGTAGCCATTCG
AGAGAGCATGCCTATAAATACGGTGCACGGGGCCTAGTCCCCCCATCAAT
GCCCCCACCAACAATAGCAACGTGGAGCGGGGTTGGTGAAAATTTGTGAT
CAAGCCATCGCAGAGAGCGAAGCGATATCCCGGGGCGACCATTAATTGCG
TTTCCCCGCCGACGCTCTCCACTCCTTCCTCCCGCGCTTGTTTTGCAAGG
GCGTCCAAAGCGGTGGCTGCTGGTACAAACGTACAAGGACGCTGGCGTGT
CGAGGAGCCGCCGAATTGGTAAGCGTCCCATTGACCCAGGCTCAAGTCCA
ATACGCTTCTTTGTTTGGTTCGAGACGAAGAGGCGGAAGAGGAGGAGGAA
GAGGAGGAGGGGGACAGGAGTTGCGCTCCCCACCAGTAGAGGCTCTCGAG
GGTCCTTACCGACGTGGTGCCCACAGGAAGGATGGGTCGCCCACTCCCAC
TGGCTTCGATGAGGGCGTCAAGCGTGGTCAGGGGTACGCTAACCCGCTCC
CAGTGCATGGTATGCTGGCTTACGTCGTCCCCCGACACAGGTTGAAAGGT
CCCGGCACCCACGTGCAGGGTGAGATGGCACGGGTCGATGGCCTTGGGTC
CGGTCTGAAGCTGCTCGAGGAGGGATTTCGTGAAGTGGAGACCGGCCGTG
GGAGCTGCCACGCTGCCTTGCGCCATGGCATAAACGGTCTGGTAGTCTTG
GACGTCGGCGGCGTCGGAGACGCGATTCATGTAAGGTGGGAGTGGAATCT
TGCCCACGCGCTCCAGAACAGTACCAAAGCTCAGGCTCTGCAATGTAGGT
TGGAAAATGCTCGTCCAGGAAAAGCGAACGAGGCCATTTTTGCCCTCACG
GCTTTCCACGTCCGCCGTCAGCGTGAGTCCCTCCCCTGCCTCCAGGACCA
AGCGGCTCCCCGCCTTGATATTCTTGCCACCAATCATGCACTGCCATACG
CTCTGGCCTGAGGGCGCAGCTAAGGCCACAGCAGGGTCCCACGATGGCTT
TAATGGGGAGATGCACAGGACTTCGGCCTTCCCCCCTGTCCCTTTTTTTT
GCATGAGGAGGCGAGCCGTTATGACACGTGACTGGTTGAGAACCAGCAGT
GACTTGGCGGGGAGAAAGGAGGGTAGGTCTCGAAACGTTGCGTCGCACGT
CCAAAGACCGTCGTTCTCCTGATCTGTGGATGCGTCCGAAACCAGAAGCA
AGGAGGCATCGCGGGGCTCAGCCGGGCGCTTTGCAATGCGGACGTCGGGC
AGAAGGTAATCGAGGGCGCTAGCTGGAGGAAGCTCTACTAGGGGCGGGCT
GTCGTCTTGGGCTGGGGCTGAGACTACACCTTTCAATTGTGATAGTGGCT
CCATACTTGCCTGTCATTGAATTTATTGTGCAGAGCGTGTGTAAAATCGG
TCGTTCGGAAGATGGGGCATAAACGTGGCGGTAGTGATATCGTGGTCCTA
ACACCCTGTACCGAATACAACCACTCATTGTAACTATTGCTGACGCACAC
AGTACCATAGACACATAGGCACACGCAAGTATTTCACAGGGACCTTCCAT
CGTGCCTTTGTTGACAGCAACATAGTCGCAACACGATATGTCCGCGACAC
CTCCGAAGACACCGTACCACGACCCCATATCTCACGCCCCGGATACATAC
AGGAGCAGGTAAAGCACAATGAAGTGGTCCAGGAAGGAGGTCAGCTCGCC
AGAACCGACGCCCAGTAGCCTCACACGCAATATCTCGTCGCCCTCCAAGA
AGTACCGGGCCAAACCGTTGACCAAGGCGGAAGTGACGAGCAATGAGTCT
TTGTTCTATTGGCGGAGGCAGTACGACGACATGATCCACTACATCCGGGA
GTCGGGCATCACCCCCGAGGAGGCGGATGATGACGAGgtaagtagctccg
aaatggggcgagggaggaatggtagagaaggcgatgggcttgtgccaaaa
agaacggagagaggggagggacgcttgcctgtctgcctgcaggcttctaa
acaatagcagcaacttaatgaggttaatgtgccgacacagcacgtcgcgg
aaaggatatcgggaaagaaattgaaacaaaaaagggttgtaggccgcctg
tctcagacttgctccgtccatgcttgcccggtccttcaatatactcacgc
acacctcttatccaccgaacagGCAATCCGCCTACTGGCCGAATGGAACG
GGAACATCAAGGACGCCGTGCTCAATGGAGAGAAAGGCCGGGAATGGAAG
AAAGCTAACCTGCCCATTTCCCGCTCTGAAGTCATGCCTACGCTCAAGAC
AGGCAAATTTGTCTTTGCGGGTTACGATAAAGTGGGCCGGGCTGTCTGCT
ACTACCGCGTCAAGCTGCACGACCCGAAAAAGTTCACGGCCCTGGAATCC
GTCCGAGCGGTGGTATATAATTATGAGCAGATGCTGGCGGAGGGCAAGCT
GCGGGGGGCGGGGGAGATATGTGTCGTGGTTGATCGGACGGACGCCAAAA
GCAGTAACATGGACATCGAGgtacgtgaggcttgctgggagtgcggcggg
gtgacgagggagcgcagaaggacgaaaaaaggtaaaagaggaaatatttt
attcgcctagattcgcactcgctcaactacccagtcttacctttcgccct
tccgcaccttctcctacaaaacagTTCATGAAGCTCCTCTACACGATGCT
TAAGGAGTCCTACCCTGCCAGAGGTGAGCTATTCTTAGTCCTAGGCGTCA
ATTTCATCTTTCGTAAGATCTGGGAGAATTTGGTTTCAGTCTTCCTTGAT
GCCAAGAGTCGGAGTGCGACACATTTGTTGAAGGATAAGACGGAATTGCT
TGATTTCATTGATGAGGAGCAGCTAGTGGATTGGTTGGGAGGGAAGCTGC
CCTACACGTTCGAACCACCTGTGGAGGAGTGAGACATAGAAGTGATAAAG
ACTGGAAGTGGGAGCAGTACCACTAGTGTAGGTTTATCGGAATACGGGTG
GGGGAGCAGAGGGGATGAGGGTGGGGAGGTTGGTGCACCACTTCCGCATA
AGGAGATAGAGCAAATTGCGGTTAGGGCGAAGGAATTTAAGAAATTAAAC
CGATTCGCAC
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protein sequence of NO03G01180.2

>NO03G01180.2-protein ID=NO03G01180.2-protein|Name=NO03G01180.2|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MKWSRKEVSSPEPTPSSLTRNISSPSKKYRAKPLTKAEVTSNESLFYWRR
QYDDMIHYIRESGITPEEADDDEAIRLLAEWNGNIKDAVLNGEKGREWKK
ANLPISRSEVMPTLKTGKFVFAGYDKVGRAVCYYRVKLHDPKKFTALESV
RAVVYNYEQMLAEGKLRGAGEICVVVDRTDAKSSNMDIEVREACWECGGV
TRERRRTKKGKRGNILFA*
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protein sequence of NO03G01180.1

>NO03G01180.1-protein ID=NO03G01180.1-protein|Name=NO03G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MKWSRKEVSSPEPTPSSLTRNISSPSKKYRAKPLTKAEVTSNESLFYWRR
QYDDMIHYIRESGITPEEADDDEAIRLLAEWNGNIKDAVLNGEKGREWKK
ANLPISRSEVMPTLKTGKFVFAGYDKVGRAVCYYRVKLHDPKKFTALESV
RAVVYNYEQMLAEGKLRGAGEICVVVDRTDAKSSNMDIEFMKLLYTMLKE
SYPARGELFLVLGVNFIFRKIWENLVSVFLDAKSRSATHLLKDKTELLDF
IDEEQLVDWLGGKLPYTFEPPVEE*
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Synonyms
Publications