NO03G01170, NO03G01170 (gene) Nannochloropsis oceanica

Overview
NameNO03G01170
Unique NameNO03G01170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length852
Alignment locationchr3:365597..366448 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:365597..366448 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO03G01170 vs. NCBI_GenBank
Match: EWM29594.1 (hypothetical protein Naga_100006g51 [Nannochloropsis gaditana])

HSP 1 Score: 323.2 bits (827), Expect = 8.200e-85
Identity = 172/260 (66.15%), Postives = 199/260 (76.54%), Query Frame = 0 
Query:    5 SSTTTSTWSQALPPQYSLMIGNLLVLANFITALLVPWVEAQYKLFDAWFPVYVPVRIGLLKCFSDVCSALTGAGRHQNSVQDKDKGGDSNSPPPIPGWGPMGGDGVDGGTPDVGGGGGAKTLFEVAAIFGVILLSISVLLALGGALVEAARIQGRQDISGLFPLQLSVASAMVCLVALLQYLFITLAGLHGGHYLAGFWLTLATAVTTGVLSLGQYLVNKSFFDQEYGDG----GLFLPAHFKGGQRPTRQVQQQDESRE 261
            S++ TSTWSQALPPQY+L++GNLLVLANFI ALLVPWVEA+YK+FDAWFPVY+PV+IGLLKCF D+CSAL G    Q   Q     G  N  PPIPGWGP GG    GG+P    GGGAK LFE+AAIF +I LS+SVL+A+GGALVEAAR+QGR+DISGLFPLQLS ASA++C VALLQYLFITLAGLHGG Y  GFWLTLATA   GVL+ GQYL++K FFD+EY DG      FLP+H   G+R      Q  + RE
Sbjct:    4 STSATSTWSQALPPQYALLLGNLLVLANFIAALLVPWVEARYKVFDAWFPVYMPVKIGLLKCFGDMCSALYGETGQQQKGQ-----GKGNDRPPIPGWGPTGG---GGGSPINDSGGGAKALFEIAAIFAIIFLSVSVLVAMGGALVEAARVQGRRDISGLFPLQLSGASALICSVALLQYLFITLAGLHGGRYEVGFWLTLATAAAVGVLTTGQYLISKKFFDEEYTDGNGGKSFFLPSHLGRGERSNSPSGQLHKLRE 255
The following BLAST results are available for this feature:
BLAST of NO03G01170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29594.18.200e-8566.15hypothetical protein Naga_100006g51 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005797NSK005797Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01170.1NO03G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562088gene_1291Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g51gene1075Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01170.1NO03G01170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01170 ID=NO03G01170|Name=NO03G01170|organism=Nannochloropsis oceanica|type=gene|length=852bp
ACCATGATTAAGTCGAGCTCCACTACCACCAGCACCTGGTCGCAAGCCCT
GCCCCCGCAATACTCCCTGATGATTGGCAACTTGCTGGTGCTCGCCAACT
TCATCACGGCCCTGCTCGTGCCCTGGGTGGAAGCTCAGTACAAACTCTTT
GATGCCTGGTTCCCCGTCTACGTGCCTGTCAGAATTGGGCTCCTCAAGTG
CTTCAGTGACGTCTGCTCGGCATTGACGGGGGCCGGCCGCCACCAAAATT
CCGTGCAGGATAAAGACAAAGGAGGAGACAGCAACTCGCCGCCGCCCATC
CCAGGATGGGGTCCGATGGGGGGCGACGGGGTTGATGGAGGTACGCCAGA
TGTCGGAGGGGGAGGGGGAGCCAAAACGTTGTTTGAGGTGGCCGCCATAT
TTGGTGTCATTCTCCTTAGCATATCAGTGCTCTTGGCCTTGGGCGGAGCA
TTGGTAGAGGCCGCACGCATTCAAGGCCGACAAGATATTAGTGGCTTGTT
TCCTTTGCAGCTTTCGGTGGCATCGGCGATGGTGTGCTTGGTAGCGTTGC
TTCAGTACTTGTTCATCACACTTGCCGGTCTGCATGGAGGGCATTATTTG
GCGGGTTTCTGGCTTACGCTGGCCACGGCGGTGACGACAGGTGTCTTGAG
CTTGGGGCAGTACTTGGTGAACAAAAGCTTCTTTGACCAGGAGTACGGAG
ATGGAGGATTATTTTTGCCAGCACACTTCAAGGGAGGGCAACGACCGACA
AGGCAGGTGCAGCAGCAGGACGAGTCAAGGGAGGTTGGGTCCGCGTGCGC
AAAGGGTTGCTGCGGAGGGGGGGGGGGGGGGGCAACAGTCGGCCGACGTT
GA
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protein sequence of NO03G01170.1

>NO03G01170.1-protein ID=NO03G01170.1-protein|Name=NO03G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MIKSSSTTTSTWSQALPPQYSLMIGNLLVLANFITALLVPWVEAQYKLFD
AWFPVYVPVRIGLLKCFSDVCSALTGAGRHQNSVQDKDKGGDSNSPPPIP
GWGPMGGDGVDGGTPDVGGGGGAKTLFEVAAIFGVILLSISVLLALGGAL
VEAARIQGRQDISGLFPLQLSVASAMVCLVALLQYLFITLAGLHGGHYLA
GFWLTLATAVTTGVLSLGQYLVNKSFFDQEYGDGGLFLPAHFKGGQRPTR
QVQQQDESREVGSACAKGCCGGGGGGATVGRR*
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Synonyms
Publications