NO03G01040, NO03G01040 (gene) Nannochloropsis oceanica

Overview
NameNO03G01040
Unique NameNO03G01040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1181
Alignment locationchr3:328096..329276 -

Link to JBrowse

Properties
Property NameValue
Description3-hydroxybutyryl-dehydratase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:328096..329276 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR029045ClpP/crotonase-like_dom
IPR001753Crotonase_core_superfam
Homology
[Close]
BLAST of NO03G01040 vs. NCBI_GenBank
Match: EWM29516.1 (3-hydroxybutyryl- dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 460.7 bits (1184), Expect = 3.800e-126
Identity = 236/298 (79.19%), Postives = 259/298 (86.91%), Query Frame = 0 
Query:   30 RCRPRYMTMLSTSSTGGANTSKPHGPGHQRGELLEEPPRNLKDIEFSLKDGVATITLDRPHRLNALSEEMGESLMRLCEYLTEAPADKVRACIVTGGSRAFSTGRDLKASKLHTTLAQRERYMKLALDSVLAVQRLPLPTIAALSGPAFGWGLELALACDLRVSSPSSLLCLPETSLGIFPGAGGVVLLRELVSPSVAKDLIFTARRFSGEEARALGVVNSVSTAVDDAALELAETIARNGPLGVRGAKEVMEGAHNVSFTEAIRLATQLRAPLSETDDFKEALQAFEEKRKPVFKGR 328
            + RPR+M    TS      T KPHGP HQRGE LEEPPRNLKD+EFSLK+GVATI LDRPHRLNALSE+M ESLMRLCEY+T AP +KVR C+VTGG+RAFSTGRDLK SKLHTTL +RERYMKLALDSV+AV RLPLPTIA LSGPAFGWGLELALACDLRV+ P+SLLCLPETSLGIFPGAGGVVLLRE+VSPS+AKDLIFTARRFSG +A +LGVVN VS  V++ A ELA+ IA NGPLGVRGAKEVMEGAHNV F  A+ LA QLRAPLSET+DFKEALQAFEEKRKP F+GR
Sbjct:   22 KLRPRFMATTPTS----FKTGKPHGPMHQRGEYLEEPPRNLKDLEFSLKNGVATIKLDRPHRLNALSEDMAESLMRLCEYMTAAPVEKVRVCVVTGGTRAFSTGRDLKDSKLHTTLEKRERYMKLALDSVMAVHRLPLPTIACLSGPAFGWGLELALACDLRVAHPASLLCLPETSLGIFPGAGGVVLLREVVSPSIAKDLIFTARRFSGTDALSLGVVNRVSPNVEENAEELAQCIAENGPLGVRGAKEVMEGAHNVDFGTAMALARQLRAPLSETEDFKEALQAFEEKRKPTFRGR 315
[Close]
BLAST of NO03G01040 vs. NCBI_GenBank
Match: OGL62713.1 (hypothetical protein A3I72_00995 [Candidatus Tectomicrobia bacterium RIFCSPLOWO2_02_FULL_70_19] >OGL67121.1 hypothetical protein A3J27_11585 [Candidatus Tectomicrobia bacterium RIFCSPLOWO2_12_FULL_69_37])

HSP 1 Score: 221.1 bits (562), Expect = 5.100e-54
Identity = 122/263 (46.39%), Postives = 163/263 (61.98%), Query Frame = 0 
Query:   66 PPRNLKDIEFSLKDGVATITLDRPHRLNALSEEMGESLMRLCEYLTEAPADKVRACIVTGGSRAFSTGRDLKASKLHTTLAQRERYMKLALDSVLAVQRLPLPTIAALSGPAFGWGLELALACDLRVSSPSSLLCLPETSLGIFPGAGGVVLLRELVSPSVAKDLIFTARRFSGEEARALGVVNSV--STAVDDAALELAETIARNGPLGVRGAKEVMEGAHNVSFTEAIRLATQLRAPLSETDDFKEALQAFEEKRKPVFKG 327
            P R  K+I +  + G+A +TL RP RLNAL   + E +  L   L  A    VRA ++TG  RAF TGRDLK S  HT   Q +RY  + ++ V   + LP+PT+AA++GP FG+G+E+ALACD+R+++  + LC PE +LGIFPGAGG V L   + P +A +LIFTA+R  G EA  +G V+       +   A  LA  I  NGPLGVR AK+V+  A  +   +AI  +   R PL+ T DF EAL AF EKRKPVF+G
Sbjct:    2 PVRAFKEIRYEEESGLAAVTLSRPERLNALGMNLAEEICALSREL--AGEKDVRAVLLTGEGRAFCTGRDLKESAAHTK-EQADRYQLIGMECVTLWEALPMPTVAAINGPCFGFGMEIALACDIRLAAEDATLCFPECALGIFPGAGGTVRLPRAIPPGLAMELIFTAKRLDGREAERIGFVSRAHPKERLMAEARSLAGQIRDNGPLGVRAAKKVIRHAAEMPLPQAIEFSNANRLPLNYTQDFAEALAAFREKRKPVFRG 261
[Close]
BLAST of NO03G01040 vs. NCBI_GenBank
Match: WP_106344372.1 (enoyl-CoA hydratase [Planifilum fimeticola] >PRX41636.1 short chain enoyl-CoA hydratase [Planifilum fimeticola])

HSP 1 Score: 187.2 bits (474), Expect = 8.200e-44
Identity = 113/260 (43.46%), Postives = 158/260 (60.77%), Query Frame = 0 
Query:   70 LKDIEFSLKDGVATITLDRPHRLNALSEEMGESLMRLCEYLTEAPADKVRACIVTG-GSRAFSTGRDLKASKLHTTLAQRERYMKLALDSVLAVQRLPLPTIAALSGPAFGWGLELALACDLRVSSPSSLLCLPETSLGIFPGAGGVVLLRELVSPSVAKDLIFTARRFSGEEARALGVVNSV--STAVDDAALELAETIARNGPLGVRGAKEVMEGAHNVSFTEAIRLATQLRAPLSETDDFKEALQAFEEKRKPVFKG 327
            + ++E+  K+G++ ITL+RP   NAL+ E  + LM++ E LT + A   RA I+TG G +AF +G DLK  +  T   Q  RY+ L  ++  A++RLP P IAA++G A G G+ELALACDLR++   ++  L ETSLGI PGAGG   L  +V  S AK+LIFTARR    EA  +G+VN V     V DAALE+A  I  N PL +  AK  ++          + + T+    L  T D  E L+AF+EKRKP+++G
Sbjct:    1 MNEVEWERKEGISVITLNRPEVYNALNFETLKELMKIVEELTHSKA--TRAVIITGAGEKAFCSGADLKERRTFTE-DQVRRYIHLIRETFTAIERLPRPVIAAVNGVALGGGMELALACDLRLADERAIFGLTETSLGIIPGAGGTQRLPRIVGKSKAKELIFTARRIDAAEAEKIGLVNHVVPKGEVLDAALEMAAMINENAPLALAQAKFAIDYGMETDLATGLVIETKAYEALIPTKDRLEGLEAFKEKRKPIYRG 257
[Close]
BLAST of NO03G01040 vs. NCBI_GenBank
Match: WP_013703719.1 (3-hydroxybutyryl-CoA dehydratase [Marinithermus hydrothermalis] >AEB11669.1 Enoyl-CoA hydratase [Marinithermus hydrothermalis DSM 14884])

HSP 1 Score: 183.0 bits (463), Expect = 1.500e-42
Identity = 112/270 (41.48%), Postives = 152/270 (56.30%), Query Frame = 0 
Query:   57 HQRGELLEEPPRNLKDIEFSLKDGVATITLDRPHRLNALSEEMGESLMRLCEYLTEAPADKVRACIVTGGSRAFSTGRDLKASKLHTTLAQRERYMKLALDSVLAVQRLPLPTIAALSGPAFGWGLELALACDLRVSSPSSLLCLPETSLGIFPGAGGVVLLRELVSPSVAKDLIFTARRFSGEEARALGVVNSVSTAVDDAALELAETIARNGPLGVRGAKEVMEGAHNVSFTEAIRLATQLRAPLSETDDFKEALQAFEEKRKPVFKG 327
            H+   +LE P    + + + ++DG+A +TL RP  LNALS E+   L  + E + + P  +VRA I TG  +AF  G D+      + +     Y  L  + + AV  LP+PTIAA++G A G GLELALACDLRV+S  + L LPE  LG+ PG GG   L  L+    A DLI T R  S EEA  LG+VN V+    +AA +LA TI +NGP+ +  AKE +    +V   EA+ +   L      T D +E  +AF EKR P FKG
Sbjct:    4 HEHEYVLEVP--EFEHLRYEVEDGIALVTLARPKALNALSGEVLRELAEVVEVIHQDP--EVRAVIFTGEGKAFVAGADISEIAALSDVFVSREYSLLGQEVMNAVAALPVPTIAAINGYALGGGLELALACDLRVASVKAKLGLPEVGLGLIPGFGGTQRLPRLIGQGRALDLILTGRHVSAEEALQLGLVNRVAEDALEAAKDLARTILKNGPVALALAKEAVARGADVPLAEALEIEADLFGLACSTQDMREGTRAFLEKRAPEFKG 269
[Close]
BLAST of NO03G01040 vs. NCBI_GenBank
Match: WP_062180444.1 (MULTISPECIES: enoyl-CoA hydratase [Bacillales])

HSP 1 Score: 181.8 bits (460), Expect = 3.400e-42
Identity = 112/250 (44.80%), Postives = 154/250 (61.60%), Query Frame = 0 
Query:   81 VATITLDRPHRLNALSEEMGESLMRLCEYLTEAPADKVRACIVTG-GSRAFSTGRDLKASKLHTTLAQRERYMKLALDSVLAVQRLPLPTIAALSGPAFGWGLELALACDLRVSSPSSLLCLPETSLGIFPGAGGVVLLRELVSPSVAKDLIFTARRFSGEEARALGVVNSVSTA--VDDAALELAETIARNGPLGVRGAKEVMEGAHNVSFTEAIRLATQLRAPLSETDDFKEALQAFEEKRKPVFKGR 328
            V+ +TL+RP + NALS ++ E L    E +T  P   VR  I+TG G + F  G DLK  +L    AQ  R +KL   ++ AVQ LP+P IAA++G AFG GLELALACD+R++S  + + L ETSLGI PGAGG   L  +V  S AK+LIFTARR   EEA  LG++N ++ A  + + ALELA  I+RN PL +R AK+ +    +      + +  +    + E+ D  E LQAF EKR+P+F G+
Sbjct:   14 VSVVTLNRPAQANALSVKLLEELNHALETVTTDPT--VRCVIITGTGDKVFCAGADLK-ERLEMDEAQVRRTVKLICSTMDAVQNLPVPVIAAINGAAFGGGLELALACDIRIASTIAKMGLTETSLGIIPGAGGTQRLPRIVGVSFAKELIFTARRIDAEEALKLGLLNKIAEADQLMNKALELAAEISRNAPLSLRAAKKAINEGIDTEIVTGLEVEKRWYDTIIESKDRLEGLQAFMEKRRPLFTGK 260
[Close]
BLAST of NO03G01040 vs. NCBI_GenBank
Match: WP_092041662.1 (enoyl-CoA hydratase [Planifilum fulgidum] >SFG56509.1 short chain enoyl-CoA hydratase [Planifilum fulgidum])

HSP 1 Score: 181.4 bits (459), Expect = 4.500e-42
Identity = 110/257 (42.80%), Postives = 155/257 (60.31%), Query Frame = 0 
Query:   73 IEFSLKDGVATITLDRPHRLNALSEEMGESLMRLCEYLTEAPADKVRACIVTG-GSRAFSTGRDLKASKLHTTLAQRERYMKLALDSVLAVQRLPLPTIAALSGPAFGWGLELALACDLRVSSPSSLLCLPETSLGIFPGAGGVVLLRELVSPSVAKDLIFTARRFSGEEARALGVVNSV--STAVDDAALELAETIARNGPLGVRGAKEVMEGAHNVSFTEAIRLATQLRAPLSETDDFKEALQAFEEKRKPVFKG 327
            +E+  K+G++ ITL+RP   NAL+ E    LM++ E L  + A   RA I+TG G +AF +G DLK  +  T   Q  R++ L  ++  A++RLP P IAA++G A G G+ELALACDLR++   ++  L ETSLGI PGAGG   L  +V  S AK+LIFTARR +  EA  +G+VN V     V DAAL++A  I  N PL +  AK  ++          + + T+    L  T D  E L+AF+EKRKP+++G
Sbjct:    4 VEWERKEGISVITLNRPEVYNALNLETLRELMKIVEELAHSKA--TRAVIITGAGEKAFCSGADLKERRTFTE-DQVRRFIHLIRETFTAIERLPRPVIAAVNGVALGGGMELALACDLRLADERAIFGLTETSLGIIPGAGGTQRLPRIVGKSKAKELIFTARRINAAEAERIGLVNHVVPKGEVLDAALKMAAMINENAPLALAQAKFAIDYGMETDLATGLMIETKAYEALIPTKDRLEGLEAFKEKRKPIYRG 257
[Close]
BLAST of NO03G01040 vs. NCBI_GenBank
Match: WP_038071525.1 (enoyl-CoA hydratase [Thermus scotoductus])

HSP 1 Score: 179.5 bits (454), Expect = 1.700e-41
Identity = 108/265 (40.75%), Postives = 148/265 (55.85%), Query Frame = 0 
Query:   62 LLEEPPRNLKDIEFSLKDGVATITLDRPHRLNALSEEMGESLMRLCEYLTEAPADKVRACIVTGGSRAFSTGRDLKASKLHTTLAQRERYMKLALDSVLAVQRLPLPTIAALSGPAFGWGLELALACDLRVSSPSSLLCLPETSLGIFPGAGGVVLLRELVSPSVAKDLIFTARRFSGEEARALGVVNSVSTAVDDAALELAETIARNGPLGVRGAKEVMEGAHNVSFTEAIRLATQLRAPLSETDDFKEALQAFEEKRKPVFKG 327
            +LE P    + + + +++G+A +TL RP  LNALS+++   L  + E + + P  +VR  I TG  +AF+ G DLK             Y  L       +  LPLPTIAA++G A G GLELALACDLRV+S  + L LPE  LG+ PG GG   L  L+    A DLIFT R  S EEA +LG+VN V     + A +LA+ I +N P+ +  AKE +     +   EA+ +   L    S T+D KE ++AF EKR P FKG
Sbjct:   12 ILEIP--EFEHLSYEVEEGIALVTLRRPEALNALSQDLLRELAEVAEVIHQDP--EVRVAIFTGEGKAFAAGADLKEIAALKDPFMAREYALLGQQVFAEIAALPLPTIAAINGYALGGGLELALACDLRVASREAKLGLPEVGLGLIPGFGGTQRLPRLIGRGRALDLIFTGRHVSAEEALSLGLVNRVGEDALEEAKKLAQKIMKNAPIALALAKESVVRGEGLDLAEALEIEADLFGYASATEDMKEGVRAFLEKRPPQFKG 272
[Close]
BLAST of NO03G01040 vs. NCBI_GenBank
Match: WP_054392435.1 (enoyl-CoA hydratase [Thermus scotoductus] >KPD25941.1 enoyl-CoA hydratase [Thermus scotoductus])

HSP 1 Score: 179.5 bits (454), Expect = 1.700e-41
Identity = 108/265 (40.75%), Postives = 149/265 (56.23%), Query Frame = 0 
Query:   62 LLEEPPRNLKDIEFSLKDGVATITLDRPHRLNALSEEMGESLMRLCEYLTEAPADKVRACIVTGGSRAFSTGRDLKASKLHTTLAQRERYMKLALDSVLAVQRLPLPTIAALSGPAFGWGLELALACDLRVSSPSSLLCLPETSLGIFPGAGGVVLLRELVSPSVAKDLIFTARRFSGEEARALGVVNSVSTAVDDAALELAETIARNGPLGVRGAKEVMEGAHNVSFTEAIRLATQLRAPLSETDDFKEALQAFEEKRKPVFKG 327
            +LE P    + + + +++G+A +TL RP  LNALS+++ + L  + E + + P  +VR  I TG  +AF+ G DLK             Y  L       +  LPLPTIAA++G A G GLELALACDLRV+S  + L LPE  LG+ PG GG   L  L+    A DLIFT R  S EEA +LG+VN V     + A +LA+ I +N P+ +  AKE +     +   EA+ +   L    S T+D KE ++AF EKR P FKG
Sbjct:   12 ILEIP--EFEHLSYEVEEGIALVTLRRPEALNALSQDLLQELAEVAEVIHQDP--EVRVAIFTGEGKAFAAGADLKEIVALKDPFMAREYALLGQQVFAEIAALPLPTIAAINGYALGGGLELALACDLRVASREAKLGLPEVGLGLIPGFGGTQRLPRLIGRGRALDLIFTGRHVSAEEALSLGLVNRVGEDALEEAKKLAQKILKNAPIALALAKESVVRGEGLDLAEALEIEADLFGYASATEDMKEGVRAFLEKRAPNFKG 272
[Close]
BLAST of NO03G01040 vs. NCBI_GenBank
Match: WP_105316890.1 (enoyl-CoA hydratase [Thermus sp. YIM 76954])

HSP 1 Score: 179.5 bits (454), Expect = 1.700e-41
Identity = 108/265 (40.75%), Postives = 148/265 (55.85%), Query Frame = 0 
Query:   62 LLEEPPRNLKDIEFSLKDGVATITLDRPHRLNALSEEMGESLMRLCEYLTEAPADKVRACIVTGGSRAFSTGRDLKASKLHTTLAQRERYMKLALDSVLAVQRLPLPTIAALSGPAFGWGLELALACDLRVSSPSSLLCLPETSLGIFPGAGGVVLLRELVSPSVAKDLIFTARRFSGEEARALGVVNSVSTAVDDAALELAETIARNGPLGVRGAKEVMEGAHNVSFTEAIRLATQLRAPLSETDDFKEALQAFEEKRKPVFKG 327
            +LE P    + + + +++G+A +TL RP  LNALS+++   L  + E + + P  +VR  I TG  +AF+ G DLK             Y  L       +  LPLPTIAA++G A G GLELALACDLRV+S  + L LPE  LG+ PG GG   L  L+    A DLIFT R  S EEA +LG+VN V     + A +LA+ I +N P+ +  AKE +     +   EA+ +   L    S T+D KE ++AF EKR P FKG
Sbjct:   12 ILEIP--EFEHLSYEVEEGIALVTLRRPEALNALSQDLLRELAEVAEVIHQDP--EVRVAIFTGEGKAFAAGADLKEIAALKDPFMAREYALLGQQVFAEIAALPLPTIAAINGYALGGGLELALACDLRVASKEAKLGLPEVGLGLIPGFGGTQRLPRLIGRGRALDLIFTGRHVSAEEALSLGLVNRVGEDALEEAKKLAQKIMKNAPIALALAKESVVRGEGLDLAEALEIEADLFGYASATEDMKEGVRAFLEKRAPNFKG 272
[Close]
BLAST of NO03G01040 vs. NCBI_GenBank
Match: WP_019550248.1 (MULTISPECIES: 3-hydroxybutyryl-CoA dehydratase [Thermus] >ETN88430.1 3-hydroxybutyryl-CoA dehydratase [Thermus sp. NMX2.A1])

HSP 1 Score: 179.1 bits (453), Expect = 2.200e-41
Identity = 108/265 (40.75%), Postives = 148/265 (55.85%), Query Frame = 0 
Query:   62 LLEEPPRNLKDIEFSLKDGVATITLDRPHRLNALSEEMGESLMRLCEYLTEAPADKVRACIVTGGSRAFSTGRDLKASKLHTTLAQRERYMKLALDSVLAVQRLPLPTIAALSGPAFGWGLELALACDLRVSSPSSLLCLPETSLGIFPGAGGVVLLRELVSPSVAKDLIFTARRFSGEEARALGVVNSVSTAVDDAALELAETIARNGPLGVRGAKEVMEGAHNVSFTEAIRLATQLRAPLSETDDFKEALQAFEEKRKPVFKG 327
            +LE P    + + + +++G+A +TL RP  LNALS+++   L  + E + + P  +VR  I TG  +AF+ G DLK             Y  L       +  LPLPTIAA++G A G GLELALACDLRV+S  + L LPE  LG+ PG GG   L  L+    A DLIFT R  S EEA +LG+VN V     + A +LA+ I +N P+ +  AKE +     +   EA+ +   L    S T+D KE ++AF EKR P FKG
Sbjct:   12 ILEIP--EFEHLSYEVEEGIALVTLRRPEALNALSQDLLRELAEVAEVIHQDP--EVRVAIFTGEGKAFAAGADLKEIAALKDPFMAREYALLGQQVFAEIAALPLPTIAAINGYALGGGLELALACDLRVASREAKLGLPEVGLGLIPGFGGTQRLPRLIGRGRALDLIFTGRHVSAEEALSLGLVNRVGEDALEEAKKLAQKIMKNAPIALALAKESVVRGEGLDLAEALEIEADLFGYASATEDMKEGVRAFLEKRAPNFKG 272
The following BLAST results are available for this feature:
BLAST of NO03G01040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29516.13.800e-12679.193-hydroxybutyryl- dehydratase [Nannochloropsis gad... [more]
OGL62713.15.100e-5446.39hypothetical protein A3I72_00995 [Candidatus Tecto... [more]
WP_106344372.18.200e-4443.46enoyl-CoA hydratase [Planifilum fimeticola] >PRX41... [more]
WP_013703719.11.500e-4241.483-hydroxybutyryl-CoA dehydratase [Marinithermus hy... [more]
WP_062180444.13.400e-4244.80MULTISPECIES: enoyl-CoA hydratase [Bacillales][more]
WP_092041662.14.500e-4242.80enoyl-CoA hydratase [Planifilum fulgidum] >SFG5650... [more]
WP_038071525.11.700e-4140.75enoyl-CoA hydratase [Thermus scotoductus][more]
WP_054392435.11.700e-4140.75enoyl-CoA hydratase [Thermus scotoductus] >KPD2594... [more]
WP_105316890.11.700e-4140.75enoyl-CoA hydratase [Thermus sp. YIM 76954][more]
WP_019550248.12.200e-4140.75MULTISPECIES: 3-hydroxybutyryl-CoA dehydratase [Th... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005812NSK005812Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01040.1NO03G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100006g36gene1090Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01040.1NO03G01040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01040 ID=NO03G01040|Name=NO03G01040|organism=Nannochloropsis oceanica|type=gene|length=1181bp
ATGCTGTCCACCGTCGTAACCACAGCCACTGCCACTGCCCTCCTATGTCG
AGCTAGACCTACGATGTGCGCCTCTTTTTATTTTTTGCGGTGCCGCCCCC
GCTACATGACCATGCTTAGCACCAGCTCGACGGGGGGGGCAAATACAAGC
AAACCCCACGGTCCTGGCCACCAAAGGGGGGAGTTGTTGGAAGAGCCGCC
ACGCAATCTAAAGGACATTGAATTTTCCCTCAAAGACGGCGTTGCCACCA
TCACCTTGGATCGACCCCACCGTTTGAACGCTCTGAGCGAAGAGATGGGC
GAGAGCTTGATGCGCCTGTGCGAGTACCTGACAGAGGCCCCGGCTGACAA
AGTCCGGGCGTGTATTGTTACTGGAGGGTCTCGCGCCTTCTCCACGGGAC
GAGACTTGAAAGCTTCAAAGTTACACACGACCTTAGCGCAACGGGAGCGG
TACATGAAATTGGCTTTGGACTCGGTTTTGGCGGTGCAGAGGCTGgtaag
gaaacgaaagacggggcccggcttatgggtgtttatgtcctccctttccc
agattaaccatcgatcctcttttcatccctcctctgtgatgttctagcaa
agcgaaaccttgtagtcccaatccctcactgcaatttataacatcaccca
acttttccctctctcaatctcgccgtctctccttcgaaatagCCCCTCCC
CACCATCGCCGCCCTCTCCGGCCCTGCCTTCGGCTGGGGCCTCGAACTCG
CCCTCGCGTGCGACCTTCGCGTTTCCTCCCCTTCATCCCTCCTCTGTCTC
CCCGAAACCTCCCTCGGAATTTTTCCCGGCGCGGGTGGGGTGGTACTTCT
ACGTGAGCTCGTCTCTCCTTCTGTTGCCAAAGACCTCATTTTCACCGCTC
GGCGTTTTTCAGGTGAAGAAGCTCGGGCACTTGGTGTCGTCAACAGCGTT
TCAACCGCGGTGGATGATGCAGCTTTGGAGCTGGCAGAGACTATCGCGAG
GAACGGTCCTCTGGGTGTGAGAGGGGCGAAGGAGGTGATGGAGGGAGCAC
ATAACGTGAGCTTTACTGAGGCCATCAGACTGGCTACCCAGCTACGGGCA
CCTTTATCGGAAACAGATGATTTCAAGGAGGCGTTACAGGCGTTTGAGGA
AAAACGAAAGCCAGTGTTCAAGGGGCGATAG
back to top

protein sequence of NO03G01040.1

>NO03G01040.1-protein ID=NO03G01040.1-protein|Name=NO03G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MLSTVVTTATATALLCRARPTMCASFYFLRCRPRYMTMLSTSSTGGANTS
KPHGPGHQRGELLEEPPRNLKDIEFSLKDGVATITLDRPHRLNALSEEMG
ESLMRLCEYLTEAPADKVRACIVTGGSRAFSTGRDLKASKLHTTLAQRER
YMKLALDSVLAVQRLPLPTIAALSGPAFGWGLELALACDLRVSSPSSLLC
LPETSLGIFPGAGGVVLLRELVSPSVAKDLIFTARRFSGEEARALGVVNS
VSTAVDDAALELAETIARNGPLGVRGAKEVMEGAHNVSFTEAIRLATQLR
APLSETDDFKEALQAFEEKRKPVFKGR*
back to top
Synonyms
Publications