NO03G01020, NO03G01020 (gene) Nannochloropsis oceanica

Overview
NameNO03G01020
Unique NameNO03G01020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2742
Alignment locationchr3:325095..327836 +

Link to JBrowse

Properties
Property NameValue
DescriptionGlutaredoxin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:325095..327836 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO:0009055electron transfer activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO:0019725cellular homeostasis
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR002109Glutaredoxin
IPR014025Glutaredoxin_subgr
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
[Close]
BLAST of NO03G01020 vs. NCBI_GenBank
Match: EWM29561.1 (glutaredoxin [Nannochloropsis gaditana])

HSP 1 Score: 194.9 bits (494), Expect = 1.400e-46
Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = 0 
Query:    1 MGNLLGGPPAVATVAAMDFVKKTLQAHKVVVFSKTYCPFASRAKQTLQSEGAVFHVVELDQRNDGGEIQAALADMTGRRTVPNVFLDSKSIGGGDDTVALARSGRLREMLLALGALK 118
            MGNLLGG    AT  AMDFVK TL+AHKVVVFSKTYCPFAS AK+TLQSEGAVFHVVELDQR+DGG+IQAALA+MTGRRTVPNVFL+ KSIGGGDDTVALAR+G+++EML ALGALK
Sbjct:   91 MGNLLGGTAVAATAEAMDFVKTTLRAHKVVVFSKTYCPFASMAKRTLQSEGAVFHVVELDQRSDGGDIQAALAEMTGRRTVPNVFLEGKSIGGGDDTVALARAGKMKEMLSALGALK 207
[Close]
BLAST of NO03G01020 vs. NCBI_GenBank
Match: GAX92617.1 (trans-acting enoyl reductase, putative [Pythium insidiosum])

HSP 1 Score: 124.0 bits (310), Expect = 3.100e-25
Identity = 63/106 (59.43%), Postives = 77/106 (72.64%), Query Frame = 0 
Query:   15 AAMDFVKKTLQAHKVVVFSKTYCPFASRAKQTLQSEGAVFHVVELDQRND---GGEIQAALADMTGRRTVPNVFLDSKSIGGGDDTVALARSGRLREMLLALGALK 118
            AA++FV+ TL  H V +FSKTYCP+   AK  ++  GA +HVVELD +ND   G EIQ ALA +TGRRTVPNVFL+ +SIGGG D  AL +SG+L EML A G LK
Sbjct:  221 AAIEFVQATLXKHPVTIFSKTYCPYCDMAKDVMKQTGAPYHVVELDTKNDVPTGAEIQNALATLTGRRTVPNVFLNKESIGGGTDVQALFQSGKLTEMLKASGVLK 326
[Close]
BLAST of NO03G01020 vs. NCBI_GenBank
Match: XP_013707566.1 (glutaredoxin-C4 [Brassica napus] >CDY16539.1 BnaC09g37340D [Brassica napus])

HSP 1 Score: 116.7 bits (291), Expect = 4.900e-23
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 0 
Query:   11 VATVAAMDFVKKTLQAHKVVVFSKTYCPFASRAKQTLQSEGAVFHVVELDQRNDGGEIQAALADMTGRRTVPNVFLDSKSIGGGDDTVALARSGRLREML 111
            V++ ++ DFVKKT+ +HK+V+FSK+YCP+  RAK        V HVVELD+R DGG IQ+AL +  GRRTVP VF++ K IGG DDTV    SG L ++L
Sbjct:   23 VSSASSADFVKKTISSHKIVIFSKSYCPYCRRAKSVFSELNQVPHVVELDEREDGGSIQSALGETVGRRTVPQVFINGKHIGGSDDTVDAHESGELAKLL 122
[Close]
BLAST of NO03G01020 vs. NCBI_GenBank
Match: XP_009120800.1 (PREDICTED: glutaredoxin-C4-like [Brassica rapa] >XP_013667303.1 glutaredoxin-C4-like [Brassica napus])

HSP 1 Score: 116.7 bits (291), Expect = 4.900e-23
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 0 
Query:   11 VATVAAMDFVKKTLQAHKVVVFSKTYCPFASRAKQTLQSEGAVFHVVELDQRNDGGEIQAALADMTGRRTVPNVFLDSKSIGGGDDTVALARSGRLREML 111
            V++ ++ DFVKKT+ +HK+V+FSK+YCP+  RAK        V HVVELD+R DGG IQ+AL ++ GRRTVP VF++ K IGG DDTV    SG L ++L
Sbjct:   23 VSSSSSADFVKKTISSHKIVIFSKSYCPYCRRAKSVFSELNQVPHVVELDEREDGGSIQSALGEIVGRRTVPQVFINGKHIGGSDDTVDAHESGELAKLL 122
[Close]
BLAST of NO03G01020 vs. NCBI_GenBank
Match: XP_013613308.1 (PREDICTED: glutaredoxin-C4-like [Brassica oleracea var. oleracea])

HSP 1 Score: 115.9 bits (289), Expect = 8.300e-23
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 0 
Query:   11 VATVAAMDFVKKTLQAHKVVVFSKTYCPFASRAKQTLQSEGAVFHVVELDQRNDGGEIQAALADMTGRRTVPNVFLDSKSIGGGDDTVALARSGRLREML 111
            V++ ++ DFVKKT+ +HK+V+FSK+YCP+  RAK        V HVVELD+R DGG IQ+AL +  GRRTVP VF++ K IGG DDTV    SG L ++L
Sbjct:   23 VSSASSADFVKKTISSHKIVIFSKSYCPYCRRAKSVFGELNQVPHVVELDEREDGGSIQSALGETVGRRTVPQVFINGKHIGGSDDTVDAHESGELAKLL 122
[Close]
BLAST of NO03G01020 vs. NCBI_GenBank
Match: XP_021651013.1 (glutaredoxin-C4 [Hevea brasiliensis])

HSP 1 Score: 114.8 bits (286), Expect = 1.900e-22
Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 0 
Query:   10 AVATVAAMDFVKKTLQAHKVVVFSKTYCPFASRAKQTLQSEGAVFHVVELDQRNDGGEIQAALADMTGRRTVPNVFLDSKSIGGGDDTVALARSGRLREML 111
            A  T   +DFVKKT+ +HK+V+FSK+YCP+  RAK   +    V HVVELDQR+DG +IQ AL+ + GRRTVP VF++ K IGG DDTV   +SG L ++L
Sbjct:   24 ASTTTPQVDFVKKTVSSHKIVIFSKSYCPYCRRAKAVFEELKEVPHVVELDQRDDGQDIQDALSKIVGRRTVPQVFINGKHIGGSDDTVEAYKSGELAKLL 124
[Close]
BLAST of NO03G01020 vs. NCBI_GenBank
Match: XP_018445734.1 (PREDICTED: glutaredoxin-C4-like [Raphanus sativus])

HSP 1 Score: 114.0 bits (284), Expect = 3.200e-22
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 0 
Query:   18 DFVKKTLQAHKVVVFSKTYCPFASRAKQTLQSEGAVFHVVELDQRNDGGEIQAALADMTGRRTVPNVFLDSKSIGGGDDTVALARSGRLREML 111
            +FVKKT+ +HK+V+FSK+YCP+  RAK        V HVVELD+R DGG IQ+AL ++ GRRTVP VF++ K IGG DDTV    SG L ++L
Sbjct:   30 EFVKKTISSHKIVIFSKSYCPYCRRAKSVFSELNQVPHVVELDEREDGGSIQSALGEIVGRRTVPQVFINGKHIGGSDDTVDAHESGELAKLL 122
[Close]
BLAST of NO03G01020 vs. NCBI_GenBank
Match: XP_021751184.1 (glutaredoxin-C4-like [Chenopodium quinoa])

HSP 1 Score: 113.2 bits (282), Expect = 5.400e-22
Identity = 52/106 (49.06%), Postives = 73/106 (68.87%), Query Frame = 0 
Query:    5 LGGPPAVATVAAMDFVKKTLQAHKVVVFSKTYCPFASRAKQTLQSEGAVFHVVELDQRNDGGEIQAALADMTGRRTVPNVFLDSKSIGGGDDTVALARSGRLREML 111
            L   PA A+ +  DF+KKT+ +H +V+FSK+YCP+  RAK+  +      HV+ELD+R+DG  IQ AL D+ GRRTVP VF++ K IGG DDTV   ++G L ++L
Sbjct:   21 LAASPASASSSQADFIKKTISSHTIVIFSKSYCPYCKRAKEVFRELDQAPHVIELDERDDGYSIQDALRDIVGRRTVPQVFINGKHIGGSDDTVEAYQNGELAKLL 126
[Close]
BLAST of NO03G01020 vs. NCBI_GenBank
Match: XP_012893595.1 (Dihydropteroate synthase [Blastocystis hominis] >CBK19547.2 Dihydropteroate synthase [Blastocystis hominis])

HSP 1 Score: 112.5 bits (280), Expect = 9.200e-22
Identity = 53/97 (54.64%), Postives = 71/97 (73.20%), Query Frame = 0 
Query:   17 MDFVKKTLQAHKVVVFSKTYCPFASRAKQTLQSEGAVFHVVELDQRNDGGEIQAALADMTGRRTVPNVFLDSKSIGGGDDTVALARSGRLREMLLAL 114
            MDFVK T+ AH VVVF K+YCP+  +A + L   G  +  + LD+R DG EIQ+ALA +TGRRTVPNVF++ +SIGGGDDT  L R+G L++++  L
Sbjct:  466 MDFVKSTIAAHPVVVFGKSYCPYCHKALRYLSQTGCHYLNINLDERPDGAEIQSALASLTGRRTVPNVFINQQSIGGGDDTEYLYRTGELQKLVQGL 562
[Close]
BLAST of NO03G01020 vs. NCBI_GenBank
Match: XP_002266525.1 (PREDICTED: glutaredoxin-C4 [Vitis vinifera])

HSP 1 Score: 112.5 bits (280), Expect = 9.200e-22
Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = 0 
Query:   15 AAMDFVKKTLQAHKVVVFSKTYCPFASRAKQTLQSEGAVFHVVELDQRNDGGEIQAALADMTGRRTVPNVFLDSKSIGGGDDTVALARSGRLREML 111
            AA DFVKKT+ +HK+ +FSK+YCP+  RAK   +    V +VVELDQR DG  IQ AL+ M GRRTVP VF++ K IGG DDTV   +SG L ++L
Sbjct:   35 AAADFVKKTISSHKIAIFSKSYCPYCKRAKAVFKELNQVPYVVELDQREDGWNIQDALSGMVGRRTVPQVFINGKHIGGSDDTVEAYQSGDLAKLL 130
The following BLAST results are available for this feature:
BLAST of NO03G01020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29561.11.400e-4682.91glutaredoxin [Nannochloropsis gaditana][more]
GAX92617.13.100e-2559.43trans-acting enoyl reductase, putative [Pythium in... [more]
XP_013707566.14.900e-2354.00glutaredoxin-C4 [Brassica napus] >CDY16539.1 BnaC0... [more]
XP_009120800.14.900e-2354.00PREDICTED: glutaredoxin-C4-like [Brassica rapa] >X... [more]
XP_013613308.18.300e-2354.00PREDICTED: glutaredoxin-C4-like [Brassica oleracea... [more]
XP_021651013.11.900e-2254.46glutaredoxin-C4 [Hevea brasiliensis][more]
XP_018445734.13.200e-2255.91PREDICTED: glutaredoxin-C4-like [Raphanus sativus][more]
XP_021751184.15.400e-2249.06glutaredoxin-C4-like [Chenopodium quinoa][more]
XP_012893595.19.200e-2254.64Dihydropteroate synthase [Blastocystis hominis] >C... [more]
XP_002266525.19.200e-2256.25PREDICTED: glutaredoxin-C4 [Vitis vinifera][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005813NSK005813Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01020.1NO03G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G01020.2NO03G01020.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G01020.3NO03G01020.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571571gene_1272Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g34gene1091Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01020.1NO03G01020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G01020.2NO03G01020.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G01020.3NO03G01020.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01020 ID=NO03G01020|Name=NO03G01020|organism=Nannochloropsis oceanica|type=gene|length=2742bp
CGGTGAGTACATCGTGATATGGTTTTTCAAGTATGGTCACTACTTTTTTT
CAACATGTCGATACGCCTTACTTTATTCACCTTGGCTGGAGGGAGGGATG
GCCTGGGCACAATCTTAATCTCAATCTTAATCTCGATCTTAATCTGAATC
CTAATCCTAATCTTAATCTTAATCTCATACCCAAATTCCACATTTTATGT
TACAGTCGACTCTGAAGCAATTGCCCTATCGCAAAGGCCACATCTCCCTC
TGCGATCCTATCGTCAAATGCCCGAAATTCTGCTTTGATTACATCATCTA
CCTCCTTCAACCGTTGACTCTTCATCAGCTTTTTGAACGCCACGATGCTT
TTCTGTACCAACGGTTTTGCCAGCATCTCCTCCAACCTGGACAACACCTC
TGGCATGAGTCTCTCACTCGCAATAACCTCACTGATCAAGTGCGCGCTCT
CCGCCTCGCGTGCCGTGAATTTCTTTCCTAGAAACAAGAGCTCACTTGCT
TTGCTCCTCCCCATCGTCAAGGGAAAGAGGGCGGATGACGCGTACTCAGG
TACGATAGCCATTCTTAAAAAGGGAGTCCAGAAGGTGGCGTGTGGGGCAG
CGTAAGCAAGGTCCACGTGACAGAGAAGGGTCACGGCGATGCCGATGGCG
GGGCCATTGACGGCCGCGACGACAAGCTTGGGGAATGCGGAGAGGGCCTG
AAGATATGGAGGAAGGGAGGGCGATTAGAAAAAGGGAGGAGGGGTGAGGA
GTGAGGAGCAGCGGGATTCATTTGACGGAGACAAGATCACACACGTACCT
TCATGAAAATTGCCGCTGGTGACGCTTCCATTTTATGGTCTGAATCTGGG
CTCCATGAATCGTCTGTTAGATCCGCCCCCGAGGAGAAATAATCTCCCTT
GCCCGTGAGCACGAGGCAAGTGACTGTCTCGTCGACGGCGGCCCTGTTCA
TGGCTTCAGCTAGGTCCAAGTACATGGCACCAGTGATGGCGTTCTTTTTC
CGGTGCCGGTCAAGGAGGAGGATGAGGATGCCGGGGAAGGGGCGTTCTTC
ATGGAAATATTTGTCTAGGTATGTGGGTGGATGGTTGAGTGGAGCTGGCG
GTTATGGGTTGGGAATGGAAGGAGAATAGTGCGATCTGTCGTGGCATGCA
CTCTTTGGGGAATGCAAAGACCCCTTACGAACGTCCATAAATTTGGAAGG
GCAAGATGCGCAGGCATTACAGGTTTACGCTTACAGCGGATGTAGCACAT
CAGGGAGAGGAGTGAAGGACAGGGAAAGGGGTGGAAGGATAGGAAAGAAG
AGCATTCTTACCCTTGTTGTTCCCGTCCCGGTGAACGACGTAATCCGCCA
TAGCGCCGAGCTGGTCCTTTCCAGTGCTGGCAAGCACGTCCTTTCTTATG
TTGTACTTGTGTGTGTGTGATGTGGAAGTGAGAACAATCCAGGAATGCAG
GCCCAGTCGTAGTTCAATTGCTGCCGCCTCGCTCGCCATCGTCATCCGAT
GGGCAACGGTGAAACACGCTCTTCTTCTTTCTCCTTCGGGACCACCTCAC
TCCTTTTAATATACCTGCAAACGAAAAAACTCACAGTTTTGGCAAGCCAC
TGAATGGGAAATTTGCTTGGAGGACCCCCTGCCGTCGCAACCGTTGCAGC
CATGGATTTCGTCAAGAAAACTCTCCAAGgtgcgtgtcctcatgatggtg
accaggggggagggagaagaagggtgggggcgagaaaggaaagatcgatg
ggacaccattatagactcgcatcgaagatgggcgctgtcgctgcacgaca
tatgcctaaagtgataccgctgccgggtcgaccaggacgcttacgacaag
cgggattggtggatgaaataagtggagggtctgcccggatcatacaccac
gtcgcccctccctgtctcatgcgtacatgcgccgtaaggctgggcctaca
ctccagttcatttaaaattgacagatgcaacgttgcgaatgcaagcgagt
tatcggtcgccgtgaatgctcgcccacctttttttcctcccaacctcgtc
cctaccaaacagCCCACAAAGTGGTCGTCTTTTCGAAAACCTACTGCCCC
TTTGCCTCCAGGGCCAAGCAAACCCTGCAATCAGAAGGCGCCGTCTTCCA
CGTCGTAGAGCTGGACCAACGTAACGATGGAGGGGAGATTCAGGCGGCCC
TTGCGGACATGACCGGCCGGCGAACGGTCCCAAACGTATTCTTGGACAGC
AAGAGTATCGGAGGGGGGGATGACACGGTGGCTTTGGCGCGGTCTGGGAG
GTTAAGGGAAATGCTCTTGGCGTTGGGGGCGCTGAAGTAAGTAAGTGAGA
Ggtacgtggtgaggctttccttgctttcgcgaggggttggggtgcaggtg
tcagcgggcatgccagggggtgtgaacatgccgcagacatttcctcttga
ctgtgaaaataccccggtttctttccctcgttcatccacagGATCGATGC
GGCGAAGCTATAGCAAGGGAGGAATACAAAATCATCAAGAAAACATTCAA
AGTATGGGAGAGAGGGGGGGGGAGGGAGAGGAAGACCAAGGGGAAAAAGC
TGAAAGAAACCTTTAAAAGAATTTCCTGATCGGGAAGTCTAAGGTATACC
GTGGATTGGAAAACGCGTAGTTAACACAATACCAAACTCAAAACGGCGGA
GAAACAGCAGCATAAGTAATAAAAGTCCTTGCCCAAACGCGT
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protein sequence of NO03G01020.1

>NO03G01020.1-protein ID=NO03G01020.1-protein|Name=NO03G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MGNLLGGPPAVATVAAMDFVKKTLQAHKVVVFSKTYCPFASRAKQTLQSE
GAVFHVVELDQRNDGGEIQAALADMTGRRTVPNVFLDSKSIGGGDDTVAL
ARSGRLREMLLALGALK*
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protein sequence of NO03G01020.2

>NO03G01020.2-protein ID=NO03G01020.2-protein|Name=NO03G01020.2|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MGNLLGGPPAVATVAAMDFVKKTLQAHKVVVFSKTYCPFASRAKQTLQSE
GAVFHVVELDQRNDGGEIQAALADMTGRRTVPNVFLDSKSIGGGDDTVAL
ARSGRLREMLLALGALK*
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protein sequence of NO03G01020.3

>NO03G01020.3-protein ID=NO03G01020.3-protein|Name=NO03G01020.3|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MGNLLGGPPAVATVAAMDFVKKTLQAHKVVVFSKTYCPFASRAKQTLQSE
GAVFHVVELDQRNDGGEIQAALADMTGRRTVPNVFLDSKSIGGGDDTVAL
ARSGRLREMLLALGALK*
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Synonyms
Publications