NO03G00980, NO03G00980 (gene) Nannochloropsis oceanica

Overview
NameNO03G00980
Unique NameNO03G00980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length591
Alignment locationchr3:319872..320462 +

Link to JBrowse

Properties
Property NameValue
DescriptionDna replication complex gins protein psf3
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:319872..320462 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036224GINS_bundle-like_dom_sf
IPR010492GINS_Psf3
IPR021151GINS_complex
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
[Close]
BLAST of NO03G00980 vs. NCBI_GenBank
Match: XP_005853444.1 (dna replication complex gins protein psf3 [Nannochloropsis gaditana CCMP526] >EKU22916.1 dna replication complex gins protein psf3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 322.0 bits (824), Expect = 1.300e-84
Identity = 162/199 (81.41%), Postives = 178/199 (89.45%), Query Frame = 0 
Query:    1 MDKGYFSVDAILAAEDRVPVVFNTTAASLGFLDPACKEEDLPARSRVELPLWLAQSLEAKNMVRLELPKHYSARFREDLLAGPEAVDIRDRSVFFYETGTALARIKRDEHLQRTMRMVFSGQRFRDILDASLNSGGDDMTDFLKDLPHAERILFDSGFVGSREYEAYKKGTHAQIGMAEVLKVSSA-----ISG-GGKE 194
            MD+GYFSVDAILAAEDRVPVVFNT AASLGFLDPACK+EDLPARSRVELPLWLA +L+AKNMVR+ELP+HYSARFREDLLAGP+AVDIR+RS FFYETGTALAR+KRD+HLQRTMRMVF+G RFR ILDASLNSGGDDMTDFL+DLPHAER LF +G  GS+  EAYKKGTHAQ+ MAEVLK  SA     + G GGKE
Sbjct:    1 MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDHLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLKGGSAPVDRTVGGQGGKE 199
[Close]
BLAST of NO03G00980 vs. NCBI_GenBank
Match: EWM29582.1 (dna replication complex gins protein psf3 [Nannochloropsis gaditana])

HSP 1 Score: 322.0 bits (824), Expect = 1.300e-84
Identity = 162/199 (81.41%), Postives = 178/199 (89.45%), Query Frame = 0 
Query:    1 MDKGYFSVDAILAAEDRVPVVFNTTAASLGFLDPACKEEDLPARSRVELPLWLAQSLEAKNMVRLELPKHYSARFREDLLAGPEAVDIRDRSVFFYETGTALARIKRDEHLQRTMRMVFSGQRFRDILDASLNSGGDDMTDFLKDLPHAERILFDSGFVGSREYEAYKKGTHAQIGMAEVLKVSSA-----ISG-GGKE 194
            MD+GYFSVDAILAAEDRVPVVFNT AASLGFLDPACK+EDLPARSRVELPLWLA +L+AKNMVR+ELP+HYSARFREDLLAGP+AVDIR+RS FFYETGTALAR+KRD+HLQRTMRMVF+G RFR ILDASLNSGGDDMTDFL+DLPHAER LF +G  GS+  EAYKKGTHAQ+ MAEVLK  SA     + G GGKE
Sbjct:    1 MDRGYFSVDAILAAEDRVPVVFNTMAASLGFLDPACKDEDLPARSRVELPLWLALALQAKNMVRVELPRHYSARFREDLLAGPDAVDIRERSAFFYETGTALARVKRDDHLQRTMRMVFAGPRFRHILDASLNSGGDDMTDFLQDLPHAERALFHAGSQGSKAQEAYKKGTHAQLDMAEVLKGGSAPADRTVGGQGGKE 199
[Close]
BLAST of NO03G00980 vs. NCBI_GenBank
Match: CBJ27683.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 179.1 bits (453), Expect = 1.300e-41
Identity = 83/179 (46.37%), Postives = 120/179 (67.04%), Query Frame = 0 
Query:    4 GYFSVDAILAAEDRVPVVFNTTAASLGFLDPACKEEDLPARSRVELPLWLAQSLEAKNMVRLELPKHYSARFREDLLAGPEAVDIRDRSVFFYETGTALARIKRDEHLQRTMRMVFSGQRFRDILDASLNSGGDDMTDFLKDLPHAERILFDSGFVGSREYEAYKKGTHAQIGMAEVLK 183
            GY+ +D IL+ E RVP VF   A  +G LDP   +EDL   ++V+ PLW+A+ L  K MV L+LPKHY+ RFRE L AGP AV++R+R  F+YE G  LA +  D+ LQ T+ MVFSG+RF+ +LD SLNS  +D+  F +DLP+ E+ LF++G+  S EY  +K     ++  ++V++
Sbjct:    5 GYYDIDTILSEEIRVPCVFTLDAVGMGVLDPTTSDEDLSQGAKVDFPLWMARPLAGKGMVNLDLPKHYTDRFREQLEAGPGAVNLRERCPFYYEVGVVLASLMGDQRLQDTLLMVFSGERFKRLLDCSLNSLNEDVNSFTRDLPNLEKSLFNAGYRSSEEYVGWKSRAFNKLATSKVIQ 183
[Close]
BLAST of NO03G00980 vs. NCBI_GenBank
Match: XP_008611982.1 (hypothetical protein SDRG_07901 [Saprolegnia diclina VS20] >EQC34576.1 hypothetical protein SDRG_07901 [Saprolegnia diclina VS20])

HSP 1 Score: 130.2 bits (326), Expect = 7.100e-27
Identity = 65/184 (35.33%), Postives = 110/184 (59.78%), Query Frame = 0 
Query:    4 GYFSVDAILAAEDRVPVVFNTTAASLGFLDPACKEEDLPARSRVELPLWLAQSLEAKNMVRLELPKHYSARFREDLLAGPEAVDIRDRSVFFYETGTALARIKRDEH----LQRTMRMVFSGQRFRDILDASLNSGGDDMTDFLKDLPHAERILFDSGFVGSREYEAYKKGTHAQIGMAEVLKV 184
            GY+SV A++A E+RV  VF T A   GFLDP+   +DL   +++ELPLW+A +L   N V+  +P   ++RFR  + AGP A ++RD + +++E G  +  +  DE     +   +R+ F G+R++ ILD S+NS  +D T+F + L   E+ LF +G   + ++  +K   +  I  A+V+++
Sbjct:    2 GYYSVGALIAEEERVQCVFQTDATDCGFLDPSSLGKDLAMNTKLELPLWMASALARHNTVKTLVPTCLNSRFRNVVKAGPSAANLRDMNPYYFEVGKQVLPLIEDEDEGRAIDEILRVAFGGERYKAILDQSMNSHDEDTTEFTRKLTEFEKDLFLAGVDDAEDFLRWKGRENGLIACAKVIQM 185
[Close]
BLAST of NO03G00980 vs. NCBI_GenBank
Match: XP_008907188.1 (hypothetical protein PPTG_13335 [Phytophthora parasitica INRA-310] >ETI44066.1 hypothetical protein F443_11195 [Phytophthora parasitica P1569] >ETL37522.1 hypothetical protein L916_10800 [Phytophthora parasitica] >ETM43955.1 hypothetical protein L914_10750 [Phytophthora parasitica] >ETN07431.1 hypothetical protein PPTG_13335 [Phytophthora parasitica INRA-310] >ETO72752.1 hypothetical protein F444_11251 [Phytophthora parasitica P1976] >ETP13886.1 hypothetical protein F441_11106 [Phytophthora parasitica CJ01A1] >KUF95101.1 ATP-binding Cassette (ABC) Superfamily [Phytophthora nicotianae])

HSP 1 Score: 129.0 bits (323), Expect = 1.600e-26
Identity = 68/187 (36.36%), Postives = 110/187 (58.82%), Query Frame = 0 
Query:    1 MDKGYFSVDAILAAEDRVPVVFNTTAASLGFLDPACKEEDLPARSRVELPLWLAQSLEAKNMVRLELPKHYSARFREDLLAGPEAVDIRDRSVFFYETGTALARIKRDE---HLQRTMRMVFSGQRFRDILDASLNSGGDDMTDFLKDLPHAERILFDSGFVGSREYEAYKKGTHAQIGMAEVLKVS 185
            M+ GY  +DAILA ++R+   F T A   G+LDP+C+E DL   + VELPLWLA+ L  +  V +E P + + RFR  L AGP +V++R+ S +  + G  L     DE    +   +R+ F G+R+RD+L+ +++S  +D T+F + L   E+ LFD+G   ++++  +K      I  A V++ S
Sbjct:    1 MNGGYLDIDAILAEDERIKCKFETDALDCGYLDPSCREPDLSEGAVVELPLWLARPLAKRGDVVVEPPHYLTKRFRRMLKAGPSSVNLREFSSYVMDVGRQLLPYVTDEEQREIGEILRLCFGGERYRDLLNNAMSSLDEDTTEFTRKLTQDEKKLFDAGTRDAKDFIQWKGRNAETITAANVVERS 187
[Close]
BLAST of NO03G00980 vs. NCBI_GenBank
Match: ETK84085.1 (hypothetical protein L915_10906 [Phytophthora parasitica] >ETL90659.1 hypothetical protein L917_10709 [Phytophthora parasitica] >ETP41935.1 hypothetical protein F442_11099 [Phytophthora parasitica P10297])

HSP 1 Score: 128.6 bits (322), Expect = 2.100e-26
Identity = 68/187 (36.36%), Postives = 110/187 (58.82%), Query Frame = 0 
Query:    1 MDKGYFSVDAILAAEDRVPVVFNTTAASLGFLDPACKEEDLPARSRVELPLWLAQSLEAKNMVRLELPKHYSARFREDLLAGPEAVDIRDRSVFFYETGTALARIKRDE---HLQRTMRMVFSGQRFRDILDASLNSGGDDMTDFLKDLPHAERILFDSGFVGSREYEAYKKGTHAQIGMAEVLKVS 185
            M+ GY  +DAILA ++R+   F T A   G+LDP+C+E DL   + VELPLWLA+ L  +  V +E P + + RFR  L AGP +V++R+ S +  + G  L     DE    +   +R+ F G+R+RD+L+ +++S  +D T+F + L   E+ LFD+G   ++++  +K      I  A V++ S
Sbjct:    1 MNGGYLDIDAILAEDERIKCKFETDALDCGYLDPSCREPDLSEGAVVELPLWLARPLAKRGDVVVEPPHYLTKRFRRMLKAGPSSVNLREFSNYVMDVGRQLLPYVTDEEQREIGEILRLCFGGERYRDLLNNAMSSLDEDTTEFTRKLTQDEKKLFDAGTRDAKDFIQWKGRNAETITAANVVERS 187
[Close]
BLAST of NO03G00980 vs. NCBI_GenBank
Match: XP_009824060.1 (hypothetical protein H257_02218 [Aphanomyces astaci] >ETV87261.1 hypothetical protein H257_02218 [Aphanomyces astaci])

HSP 1 Score: 127.9 bits (320), Expect = 3.500e-26
Identity = 63/184 (34.24%), Postives = 113/184 (61.41%), Query Frame = 0 
Query:    4 GYFSVDAILAAEDRVPVVFNTTAASLGFLDPACKEEDLPARSRVELPLWLAQSLEAKNMVRLELPKHYSARFREDLLAGPEAVDIRDRSVFFYETGTALARIKRDE----HLQRTMRMVFSGQRFRDILDASLNSGGDDMTDFLKDLPHAERILFDSGFVGSREYEAYKKGTHAQIGMAEVLKV 184
            GY+SVD +LA E+RV  VF T AA  G++DP+ + +D+   +++ELP+WLA +L     V + +P   S R+R  + AGP A ++RD + FF+E G A+  +  +E     ++  +R+ F G+R++ ILD S+NS  +D T+F + L   E+ L+ +G   ++++  +++  +  I  A+V ++
Sbjct:    2 GYYSVDELLAEEERVQCVFQTEAAGCGYMDPSTEGDDILQNTKLELPVWLATALAKHGTVDVLVPTCLSVRYRNVIKAGPSAANLRDMNPFFFELGKAVLPLLTNEADAQEIEDILRVAFGGERYKQILDQSMNSYDEDTTEFTRKLTEFEKDLYAAGVNDAQDFLRWRERKNDIIESAKVTQI 185
[Close]
BLAST of NO03G00980 vs. NCBI_GenBank
Match: GAX95208.1 (Hypothetical protein PINS_003085 [Pythium insidiosum])

HSP 1 Score: 127.5 bits (319), Expect = 4.600e-26
Identity = 65/184 (35.33%), Postives = 107/184 (58.15%), Query Frame = 0 
Query:    5 YFSVDAILAAEDRVPVVFNTTAASLGFLDPACKEEDLPARSRVELPLWLAQSLEAKNMVRLELPKHYSARFREDLLAGPEAVDIRDRSVFFYETGTALARIKRD---EHLQRTMRMVFSGQRFRDILDASLNSGGDDMTDFLKDLPHAERILFDSGFVGSREYEAYKKGTHAQIGMAEVLKVSS 186
            YF ++ ILA E+R+   F T A    +LDP+C + DL + + VELPLWLA+ L  +  V +E+P   + RFR  + AGP AV++RD S + YE    +  +  +   + +Q  +R+ F G R+R+IL+ S+N+  +D T+F + L   E+ LF +G   ++++  +K      I  A V++ SS
Sbjct:    8 YFDINDILAGEERIKCTFQTDAVDCAYLDPSCVDXDLKSGAVVELPLWLAEPLAMRGDVAIEVPSFLTQRFRRIMKAGPSAVNLRDFSPYVYEVAKHVLPLVEEGDGKEIQEILRLAFGGDRYREILNNSMNTLQEDTTEFTRKLTEEEKALFQAGVQDAKDFMHWKGRRADVITAASVIQRSS 191
[Close]
BLAST of NO03G00980 vs. NCBI_GenBank
Match: KUF64916.1 (Dynein heavy chain 7 [Phytophthora nicotianae])

HSP 1 Score: 127.1 bits (318), Expect = 6.000e-26
Identity = 64/171 (37.43%), Postives = 104/171 (60.82%), Query Frame = 0 
Query:    1 MDKGYFSVDAILAAEDRVPVVFNTTAASLGFLDPACKEEDLPARSRVELPLWLAQSLEAKNMVRLELPKHYSARFREDLLAGPEAVDIRDRSVFFYETGTALARIKRDE---HLQRTMRMVFSGQRFRDILDASLNSGGDDMTDFLKDLPHAERILFDSGFVGSREYEAYK 169
            M+ GY  +DAILA ++R+   F T A   G+LDP+C+E DL   + VELPLWLA+ L  +  V +E P + + RFR  L AGP +V++R+ S +  + G  L     DE    +   +R+ F G+R+RD+L+ +++S  +D T+F + L   E+ LFD+G   ++++  +K
Sbjct:    1 MNGGYLDIDAILAEDERIKCKFETDALDCGYLDPSCREPDLSEGAVVELPLWLARPLAKRGDVVVEPPHYLTKRFRRMLKAGPSSVNLREFSSYVMDVGRQLLPYVTDEEQREIGEILRLCFGGERYRDLLNNAMSSLDEDTTEFTRKLTQDEKKLFDAGTRDAKDFIQWK 171
[Close]
BLAST of NO03G00980 vs. NCBI_GenBank
Match: XP_012195257.1 (hypothetical protein SPRG_19061 [Saprolegnia parasitica CBS 223.65] >KDO34223.1 hypothetical protein SPRG_19061 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 126.7 bits (317), Expect = 7.900e-26
Identity = 63/184 (34.24%), Postives = 109/184 (59.24%), Query Frame = 0 
Query:    4 GYFSVDAILAAEDRVPVVFNTTAASLGFLDPACKEEDLPARSRVELPLWLAQSLEAKNMVRLELPKHYSARFREDLLAGPEAVDIRDRSVFFYETGTALARIKRDEH----LQRTMRMVFSGQRFRDILDASLNSGGDDMTDFLKDLPHAERILFDSGFVGSREYEAYKKGTHAQIGMAEVLKV 184
            GY+SV  ++A E+R+  VF T A   GFLDP+   +DL   +++ELPLW+A +L   N V+  +P   ++RFR  + AGP A ++RD + +++E G  +  +  DE     +   +R+ F G+R++ ILD S+NS  +D T+F + L   E+ LF +G   + ++  +K   +  I  A+V+++
Sbjct:    2 GYYSVAELIAEEERIQCVFQTDATDCGFLDPSSLGKDLSMDTKLELPLWMASALARHNTVKTLVPTCLNSRFRNVVKAGPSAANLRDMNPYYFEVGKQVLPLIEDEDEGRAIDEILRVAFGGERYKAILDQSMNSHDEDTTEFTRKLTEYEKDLFLAGVDDAEDFLRWKGRENGLIACAKVIQM 185
The following BLAST results are available for this feature:
BLAST of NO03G00980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853444.11.300e-8481.41dna replication complex gins protein psf3 [Nannoch... [more]
EWM29582.11.300e-8481.41dna replication complex gins protein psf3 [Nannoch... [more]
CBJ27683.11.300e-4146.37conserved unknown protein [Ectocarpus siliculosus][more]
XP_008611982.17.100e-2735.33hypothetical protein SDRG_07901 [Saprolegnia dicli... [more]
XP_008907188.11.600e-2636.36hypothetical protein PPTG_13335 [Phytophthora para... [more]
ETK84085.12.100e-2636.36hypothetical protein L915_10906 [Phytophthora para... [more]
XP_009824060.13.500e-2634.24hypothetical protein H257_02218 [Aphanomyces astac... [more]
GAX95208.14.600e-2635.33Hypothetical protein PINS_003085 [Pythium insidios... [more]
KUF64916.16.000e-2637.43Dynein heavy chain 7 [Phytophthora nicotianae][more]
XP_012195257.17.900e-2634.24hypothetical protein SPRG_19061 [Saprolegnia paras... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005820NSK005820Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00980.1NO03G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571554gene_1268Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g30gene1095Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00980.1NO03G00980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00980 ID=NO03G00980|Name=NO03G00980|organism=Nannochloropsis oceanica|type=gene|length=591bp
ATGGACAAGGGCTACTTCTCAGTGGACGCCATTCTGGCCGCCGAGGACCG
TGTACCCGTCGTTTTTAACACCACAGCCGCATCCCTAGGGTTCCTGGACC
CTGCTTGTAAAGAGGAAGACTTGCCCGCTCGGTCTCGAGTGGAGCTTCCG
CTCTGGCTAGCCCAATCCCTCGAAGCCAAAAATATGGTGCGTCTCGAGCT
ACCCAAGCATTACTCCGCGCGCTTCCGTGAAGATCTTTTAGCTGGGCCCG
AGGCCGTCGACATTCGTGATCGGAGCGTCTTCTTCTACGAGACGGGCACG
GCACTCGCCAGGATTAAACGGGACGAGCACCTGCAACGGACCATGCGGAT
GGTATTTTCCGGACAGCGTTTTCGAGACATTTTGGACGCAAGTTTGAACA
GTGGCGGGGATGACATGACTGATTTTCTGAAGGACTTGCCGCATGCGGAG
CGGATTTTGTTTGATTCTGGATTTGTGGGGTCGAGGGAATATGAGGCGTA
TAAAAAGGGGACACACGCTCAGATCGGAATGGCGGAGGTGTTGAAGGTGA
GTAGTGCCATAAGTGGAGGGGGAAAAGAGGGGGAAAAATGA
back to top

protein sequence of NO03G00980.1

>NO03G00980.1-protein ID=NO03G00980.1-protein|Name=NO03G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MDKGYFSVDAILAAEDRVPVVFNTTAASLGFLDPACKEEDLPARSRVELP
LWLAQSLEAKNMVRLELPKHYSARFREDLLAGPEAVDIRDRSVFFYETGT
ALARIKRDEHLQRTMRMVFSGQRFRDILDASLNSGGDDMTDFLKDLPHAE
RILFDSGFVGSREYEAYKKGTHAQIGMAEVLKVSSAISGGGKEGEK*
back to top
Synonyms
Publications