NO03G00870, NO03G00870 (gene) Nannochloropsis oceanica

Overview
NameNO03G00870
Unique NameNO03G00870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1323
Alignment locationchr3:286513..287835 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:286513..287835 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR025714Methyltranfer_dom
Homology
BLAST of NO03G00870 vs. NCBI_GenBank
Match: XP_005780465.1 (hypothetical protein EMIHUDRAFT_235230 [Emiliania huxleyi CCMP1516] >EOD28036.1 hypothetical protein EMIHUDRAFT_235230 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 117.1 bits (292), Expect = 1.400e-22
Identity = 121/368 (32.88%), Postives = 154/368 (41.85%), Query Frame = 0
Query:   59 ARLVAQGHRPPLVLDVSPREMFARHQQQLRRLPNILAVSVPLAELSSRLYELPPPHEAVLEVGGQGKADVRIAKHLLESAGWRCNVAFQDHGAELDLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDTSIAVMRDRAGDVLHLRPNPFLHMAALELIDWKALFLSSSAXXXXXXXXXXXXXPLVMIDLGCGSGRDAFFLAEQAQLHCHALHPNSHQRQQVKVLAIDNHGDALERTATLAARGGVDNILECVRMDLRRPMVSKDLLERQPKPSLVHAARFLERRLLVEWLTNPNAVAPGGYVIWSTFRDAETGKGERNAAPPFATSRRLRRGELGSYFRVLGGGNGEGLYDVLHEEEGGQLATRGM 427
            A  +A G  PP+V+D+ PRE F   Q  L       + S+PL  L +RL+ELPPP E  L + G   A++  A+ LL   GW     F++  A+   +                                   A           LRPN FL  +AL  +D     L  +                  ID+GCGSGRDA FLA+                   + + +DNH  ALER   LA   GV        +   R     DL ER    S+VH  RFL+R LL      P  VAPGG V+WSTF D   G G    APPF  SRRL+RGE+   F     G   G ++VL  EE G L TRG+
Sbjct:   57 ASFLAAG-EPPVVVDLRPREAF--EQCHLSG-----SSSLPLTSLRARLFELPPPGEWPLTLVGSA-AELETARALLLPKGWE----FEERHADDSAFWEG--------------------------------AASESGPDSAPLLRPNAFL-ASALRQVD-----LPEAG---------------AAIDVGCGSGRDAVFLAQTL-------------GDTWETIGVDNHKGALERAQRLADGCGVSAAFALANV---RKQSLSDLTER--PISIVHGCRFLDRPLL---RALPEVVAPGGLVVWSTFLD---GDGPPQ-APPFRPSRRLQRGEMEHLF-----GESRG-FEVLRAEE-GTLLTRGV 326          
BLAST of NO03G00870 vs. NCBI_GenBank
Match: CBJ48498.1 (Tellurite resistance methyltransferase, TehB, core [Ectocarpus siliculosus])

HSP 1 Score: 95.9 bits (237), Expect = 3.300e-16
Identity = 110/425 (25.88%), Postives = 164/425 (38.59%), Query Frame = 0
Query:   70 LVLDVSPREMFARHQQQLRRLPNILAVSVPLAELSSRLYELPPPHEAVLEVGGQGKADVRIAKHLLESAGWRCNVAFQDHGAELDLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDTSIAVMRDRAGDVLHLRPNPFLHMAALELIDWKALFLSSSAXXXXXXXXXXXXXPLVMIDLGCGSGRDAFFLAEQAQLHCHALHPNSHQRQQVKVLAIDNHGDALERTATLAAR------------------------------------GGV-------------DNILECVRMDLRRPMVSKDLLERQP-------KPSLVHAARFLERRLLVEWLTNPNAVAPGGYVIWSTFRDAETGKGERNAAPPFATSRRLRRGELGSYFRVLGGGNGEGLYDVLHEEEGGQLATRGMVVPASFVVARRR 439
            +VLD+ PR  F R   +        + S+P+ EL  RL ELPPP    + + G  + ++R A+  L + GW+          E+DL                                 TS+ V   RA D L    + F+  +  +   +    L                    ++DLGCGSGRD  ++A++       L P +      +V+ +DNH  ALER A LA R                                    GGV             +   +    ++R+      L + +        + S+VH  RF   RLL   L   + + PGGY IWSTF D     G  N  PP+  SR +R GEL   F      +G+G +++L +E+ G+L TRG  VPA+F   R+R
Sbjct:  132 VVLDLRPRADFRREHLE-------GSTSIPVDELEPRLLELPPPFAQPVNIVG-SQQELRTARDFLTNKGWQIE-------EEVDL-----------SVAACTKDPAHPTEAWPTETGSTSLQVW--RANDFLEFCMDRFVLPSGHDASPFPGKGL--------------------VLDLGCGSGRDTVYMAQR-------LPPGT------RVVGVDNHSYALERGARLAERWLEDTSSGEXXXXXXXXXXXXXXXXXXXXETQTGCLGGVTSGAVGRSDTDGSEGATKGNPPEVRQRACEWSLADLRKEGSLDGMRASIVHGHRFKCERLLP--LLRDHVLLPGGYFIWSTFLDT----GSENLVPPWRPSRMMRPGELADIF------SGDG-FEILVDEQ-GELPTRGSTVPANFFACRKR 481          
The following BLAST results are available for this feature:
BLAST of NO03G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005780465.11.400e-2232.88hypothetical protein EMIHUDRAFT_235230 [Emiliania ... [more]
CBJ48498.13.300e-1625.88Tellurite resistance methyltransferase, TehB, core... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00870.1NO03G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00870.1NO03G00870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00870 ID=NO03G00870|Name=NO03G00870|organism=Nannochloropsis oceanica|type=gene|length=1323bp
ATGCGGCAAGGATTAGTAGGGCCTTACACCTTTCTTCCTCCACGGTCGGC
AACCTCAAGCAGCAGCCTACGCAGGGTTGTTCGGCTTTTCCACAACCATC
AACAACAAGCGAGCATCGATAAGGAGGACGAGGACCACCACTGCACTAAT
CTCCCACCACAGGATTCTTACCACGCCCGGCTTGTCGCTCAAGGGCATCG
GCCTCCCTTGGTCTTGGATGTGAGCCCACGGGAGATGTTTGCGCGACACC
AACAGCAGCTGAGACGTCTTCCAAACATTCTTGCTGTTTCTGTGCCCTTG
GCCGAATTATCGTCACGTTTATATGAGCTTCCTCCGCCACATGAGGCTGT
ATTGGAGGTGGGGGGCCAGGGAAAAGCAGATGTAAGGATTGCAAAGCATT
TGTTGGAGTCGGCGGGATGGAGATGTAACGTTGCTTTTCAAGACCACGGG
GCGGAGCTTGATTTGTATGTGACGGCAGCAGCAGGAGCAGGAGCAGGAGC
AGGAGCAGATACAGAAAGCGCAGCAGTTGCCGCAGTGGCAAGATGGCAGC
GACAGCAGCGAGATACCTCGATTGCAGTGATGCGGGATAGAGCAGGGGAC
GTCCTGCATCTTCGTCCGAATCCCTTCCTGCACATGGCAGCCCTGGAGCT
GATTGATTGGAAAGCCCTTTTCCTCTCGTCGTCGGCCTCTTCCTCCCCCT
CCTCTTTCTCATCTGCGTTTTCATCTCCACTTGTAATGATAGACCTAGGT
TGCGGTAGCGGGCGAGATGCCTTCTTCCTCGCCGAGCAAGCCCAGCTACA
CTGTCACGCCCTGCATCCCAACTCCCACCAACGCCAACAAGTAAAAGTTC
TCGCGATTGACAATCATGGTGACGCCCTGGAACGGACGGCGACCCTTGCC
GCACGTGGAGGGGTGGACAATATCCTCGAATGTGTCAGGATGGATTTGCG
TCGACCGATGGTAAGCAAGGATCTTCTGGAGCGGCAGCCAAAGCCGTCGT
TGGTGCATGCAGCTCGCTTTCTAGAACGGCGATTGCTCGTGGAGTGGTTG
ACAAACCCGAACGCCGTGGCTCCGGGGGGATATGTGATTTGGTCTACTTT
TAGGGATGCGGAGACAGGAAAAGGGGAGCGGAACGCGGCCCCTCCTTTTG
CGACGTCTCGGAGGCTCCGGCGAGGGGAGCTGGGAAGTTACTTCCGGGTA
TTGGGGGGAGGAAATGGAGAAGGTTTATACGACGTTCTGCATGAAGAGGA
GGGGGGGCAGTTGGCGACAAGGGGAATGGTGGTGCCTGCATCGTTTGTAG
TGGCGCGCCGAAGAAATAATTAA
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protein sequence of NO03G00870.1

>NO03G00870.1-protein ID=NO03G00870.1-protein|Name=NO03G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MRQGLVGPYTFLPPRSATSSSSLRRVVRLFHNHQQQASIDKEDEDHHCTN
LPPQDSYHARLVAQGHRPPLVLDVSPREMFARHQQQLRRLPNILAVSVPL
AELSSRLYELPPPHEAVLEVGGQGKADVRIAKHLLESAGWRCNVAFQDHG
AELDLYVTAAAGAGAGAGADTESAAVAAVARWQRQQRDTSIAVMRDRAGD
VLHLRPNPFLHMAALELIDWKALFLSSSASSSPSSFSSAFSSPLVMIDLG
CGSGRDAFFLAEQAQLHCHALHPNSHQRQQVKVLAIDNHGDALERTATLA
ARGGVDNILECVRMDLRRPMVSKDLLERQPKPSLVHAARFLERRLLVEWL
TNPNAVAPGGYVIWSTFRDAETGKGERNAAPPFATSRRLRRGELGSYFRV
LGGGNGEGLYDVLHEEEGGQLATRGMVVPASFVVARRRNN*
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Synonyms
Publications