NO03G00760, NO03G00760 (gene) Nannochloropsis oceanica

Overview
NameNO03G00760
Unique NameNO03G00760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length771
Alignment locationchr3:248680..249450 -

Link to JBrowse

Properties
Property NameValue
DescriptionBestrophin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:248680..249450 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO03G00760 vs. NCBI_GenBank
Match: EWM29617.1 (Bestrophin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 151.0 bits (380), Expect = 3.700e-33
Identity = 72/88 (81.82%), Postives = 82/88 (93.18%), Query Frame = 0 
Query:    1 MLVISFSVTLRAHLQRVVVSTELEALLPSWEADQVRMNSCPPALIAMKLTHLINEAVGKNEQRSDFYALYLEQLVGELINCLGMAERI 89
            ML+I+F+VTLRAHLQR +VSTELE LLPSWEADQVRM++CPPAL+ MKLT+LINEAV  NE RSDFYALYLEQLVG+L+NCLGMAERI
Sbjct:  267 MLIIAFAVTLRAHLQRNIVSTELETLLPSWEADQVRMDTCPPALVCMKLTYLINEAVSHNEARSDFYALYLEQLVGDLVNCLGMAERI 354
The following BLAST results are available for this feature:
BLAST of NO03G00760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29617.13.700e-3381.82Bestrophin-like protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00760.1NO03G00760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00760.1NO03G00760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00760 ID=NO03G00760|Name=NO03G00760|organism=Nannochloropsis oceanica|type=gene|length=771bp
ATGTTGGTCATCTCCTTCTCCGTCACCCTGCGGGCACACCTGCAGAGGGT
TGTGGTGTCCACAGAATTGGAAGCACTGCTTCCTTCGTGGGAAGCGGACC
AGGTGAGGATGAATTCCTGCCCGCCTGCACTGATTGCCATGAAGTTAACG
CACCTGATCAACGAAGCCGTGGGGAAGAACGAGCAGCGGTCGGACTTCTA
CGCTCTTTATCTAGAGCAACTCGTGGGAGAGCTCATAAATTGCCTAGgtg
agccctcctgcctgcccttctcttcttccttctatttccccatccgtccg
tcgctccgtccctccctccctccctgcctccctccgggttgtttcgcctc
ggtcctttcttcccagttggtcgaaactgataatattaagagcacatcgg
acgatgtttggaccctttcaccctctctcaatctccctccttccctccct
ctctccctcccagGCATGGCAGAGCGTATCCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACAGCAAGAGGAGGAAG
AGAAGGAGGAGCAGCAGCAGCAGCAGCAACAGGAGGAGAGAGCGGAAGAG
GATGACAATATGTTTGCGCATACGGCGGCTCTCAATGAGCTGGCGGAGTA
TTTGCGCACGGAAAGAAGGCCGGAAGAGGAAGGAGGGGCAGAGAGTTGGA
GAAGGAGCAGGGGGGCAATAG
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protein sequence of NO03G00760.1

>NO03G00760.1-protein ID=NO03G00760.1-protein|Name=NO03G00760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MLVISFSVTLRAHLQRVVVSTELEALLPSWEADQVRMNSCPPALIAMKLT
HLINEAVGKNEQRSDFYALYLEQLVGELINCLGMAERIXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXDSKRRKRRRSSSSSSNRRRERKRMTICL
RIRRLSMSWRSICARKEGRKRKEGQRVGEGAGGQ*
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Synonyms
Publications