NO03G00670, NO03G00670 (gene) Nannochloropsis oceanica

Overview
NameNO03G00670
Unique NameNO03G00670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3283
Alignment locationchr3:213615..216897 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein S24/S35, mitochondrial
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:213615..216897 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019349Ribosomal_S24/S35_mit
Homology
[Close]
BLAST of NO03G00670 vs. NCBI_GenBank
Match: EWM30014.1 (hypothetical protein Naga_100802g4 [Nannochloropsis gaditana])

HSP 1 Score: 99.4 bits (246), Expect = 1.800e-17
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 0 
Query:  123 GVTPHLTDNDSSPSSSVPLLPPRQVPDAVLRFTTVAYLDSSAYIPYPHKDGIDARAFTTNPANFKV 189
            G+ P L +  SSP SSVPLLP RQVPD  LR TTV+Y+DSS YIP+PHKDGIDARAF TNPANFKV
Sbjct:  130 GLDPKLMNEPSSP-SSVPLLPHRQVPDHALRITTVSYMDSSTYIPFPHKDGIDARAFPTNPANFKV 194
[Close]
BLAST of NO03G00670 vs. NCBI_GenBank
Match: CBJ31376.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 71.6 bits (174), Expect = 4.000e-9
Identity = 47/132 (35.61%), Postives = 70/132 (53.03%), Query Frame = 0 
Query:  142 LPPRQVPDAVLRFTTVAYLDSSAYIPYPHKDGIDARAFTTNPANFKVTMQVSMKDLGLSEREQKRLRCLVGSRYNPGRRDVTLVSNRFMNRDHNK----------------------QYLIYLLENLVSEAQ 252
            LPPR VPD +L F+   Y+   A   YP+  G+       +PA FKV ++V +  LGL+  E++RL  +VG RY   ++ + LVS+RF NR  NK                      +YL++LLEN++ EA+
Sbjct:    6 LPPRTVPDDILGFSCRTYMAGDADERYPNAHGV-------HPAEFKVELRVPVPLLGLAPAEEERLIQIVGPRYLERQQVLRLVSDRFPNRIDNKSAPETRLDMRTKAVVDNYLAFQRYLVHLLENILVEAR 130
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BLAST of NO03G00670 vs. NCBI_GenBank
Match: XP_010549102.1 (PREDICTED: uncharacterized protein LOC104820380 [Tarenaya hassleriana] >XP_010549103.1 PREDICTED: uncharacterized protein LOC104820380 [Tarenaya hassleriana])

HSP 1 Score: 70.1 bits (170), Expect = 1.200e-8
Identity = 34/74 (45.95%), Postives = 52/74 (70.27%), Query Frame = 0 
Query:  182 NPANFKVTMQVSMKDLGLSEREQKRLRCLVGSRYNPGRRDVTLVSNRFMNRDHNKQYLIYLLENLVSEAQGKGN 256
            +P N KV M V++K++GLS+ + +RLR LVG RYNPG+ ++T+ S RF +R+ N++  +  L  L+ EA GK N
Sbjct:  310 HPKNRKVKMSVTVKEIGLSKHQSRRLRELVGKRYNPGKDELTITSERFEHREENRKDCLRTLYGLIEEA-GKAN 382
[Close]
BLAST of NO03G00670 vs. NCBI_GenBank
Match: OMO73277.1 (hypothetical protein COLO4_27184 [Corchorus olitorius])

HSP 1 Score: 70.1 bits (170), Expect = 1.200e-8
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 0 
Query:  182 NPANFKVTMQVSMKDLGLSEREQKRLRCLVGSRYNPGRRDVTLVSNRFMNRDHNKQYLIYLLENLVSEAQGKGNANA 259
            +P N KV M V++K+LGLS+ + +RLR LVG RY+PGR ++T+ S RF +R+ N++  +  L +L+ EA GK N  A
Sbjct:  311 HPKNRKVKMSVTVKELGLSKHQYRRLRELVGKRYHPGRDELTITSERFEHREENRKDCLRTLFSLIEEA-GKANKMA 386
[Close]
BLAST of NO03G00670 vs. NCBI_GenBank
Match: OMO92662.1 (hypothetical protein CCACVL1_06785 [Corchorus capsularis])

HSP 1 Score: 70.1 bits (170), Expect = 1.200e-8
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 0 
Query:  182 NPANFKVTMQVSMKDLGLSEREQKRLRCLVGSRYNPGRRDVTLVSNRFMNRDHNKQYLIYLLENLVSEAQGKGNANA 259
            +P N KV M V++K+LGLS+ + +RLR LVG RY+PGR ++T+ S RF +R+ N++  +  L +L+ EA GK N  A
Sbjct:  315 HPKNRKVKMSVTVKELGLSKHQYRRLRELVGKRYHPGRDELTITSERFEHREENRKDCLRTLFSLIEEA-GKANKMA 390
[Close]
BLAST of NO03G00670 vs. NCBI_GenBank
Match: EEF37513.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 69.7 bits (169), Expect = 1.500e-8
Identity = 35/74 (47.30%), Postives = 54/74 (72.97%), Query Frame = 0 
Query:  182 NPANFKVTMQVSMKDLGLSEREQKRLRCLVGSRYNPGRRDVTLVSNRFMNRDHNKQYLIYLLENLVSEAQGKGN 256
            +P N KV M V++K+LGLS+ + KR+R LVG RY+PGR ++T++S RF +R+ N++  +  L +L+ EA GK N
Sbjct:  304 HPKNRKVKMAVTVKELGLSKHQFKRMRELVGKRYHPGRDELTIISERFEHREENRKDCLRTLYSLLEEA-GKAN 376
[Close]
BLAST of NO03G00670 vs. NCBI_GenBank
Match: XP_002524889.2 (PREDICTED: uncharacterized protein LOC8286395 [Ricinus communis])

HSP 1 Score: 69.7 bits (169), Expect = 1.500e-8
Identity = 35/74 (47.30%), Postives = 54/74 (72.97%), Query Frame = 0 
Query:  182 NPANFKVTMQVSMKDLGLSEREQKRLRCLVGSRYNPGRRDVTLVSNRFMNRDHNKQYLIYLLENLVSEAQGKGN 256
            +P N KV M V++K+LGLS+ + KR+R LVG RY+PGR ++T++S RF +R+ N++  +  L +L+ EA GK N
Sbjct:  524 HPKNRKVKMAVTVKELGLSKHQFKRMRELVGKRYHPGRDELTIISERFEHREENRKDCLRTLYSLLEEA-GKAN 596
[Close]
BLAST of NO03G00670 vs. NCBI_GenBank
Match: XP_008393332.1 (PREDICTED: uncharacterized protein LOC103455521 [Malus domestica])

HSP 1 Score: 68.9 bits (167), Expect = 2.600e-8
Identity = 34/74 (45.95%), Postives = 53/74 (71.62%), Query Frame = 0 
Query:  182 NPANFKVTMQVSMKDLGLSEREQKRLRCLVGSRYNPGRRDVTLVSNRFMNRDHNKQYLIYLLENLVSEAQGKGN 256
            +P N KV + V++K+LGLS+ + +RLR LVG RYNPG+ ++T+ S RF +R+ N++  +  L +L+ EA GK N
Sbjct:  306 HPKNRKVKLSVTVKELGLSKHQFRRLRDLVGKRYNPGKDELTITSERFEHREENRKDCLRTLLSLIEEA-GKAN 378
[Close]
BLAST of NO03G00670 vs. NCBI_GenBank
Match: XP_008360904.1 (PREDICTED: uncharacterized protein LOC103424591 [Malus domestica])

HSP 1 Score: 68.9 bits (167), Expect = 2.600e-8
Identity = 34/74 (45.95%), Postives = 53/74 (71.62%), Query Frame = 0 
Query:  182 NPANFKVTMQVSMKDLGLSEREQKRLRCLVGSRYNPGRRDVTLVSNRFMNRDHNKQYLIYLLENLVSEAQGKGN 256
            +P N KV + V++K+LGLS+ + +RLR LVG RYNPG+ ++T+ S RF +R+ N++  +  L +L+ EA GK N
Sbjct:  306 HPKNRKVKLSVTVKELGLSKHQFRRLRDLVGKRYNPGKDELTITSERFEHREENRKDCLRTLLSLIEEA-GKAN 378
[Close]
BLAST of NO03G00670 vs. NCBI_GenBank
Match: XP_009360127.1 (PREDICTED: uncharacterized protein LOC103950623 [Pyrus x bretschneideri])

HSP 1 Score: 68.9 bits (167), Expect = 2.600e-8
Identity = 34/74 (45.95%), Postives = 53/74 (71.62%), Query Frame = 0 
Query:  182 NPANFKVTMQVSMKDLGLSEREQKRLRCLVGSRYNPGRRDVTLVSNRFMNRDHNKQYLIYLLENLVSEAQGKGN 256
            +P N KV + V++K+LGLS+ + +RLR LVG RYNPG+ ++T+ S RF +R+ N++  +  L +L+ EA GK N
Sbjct:  307 HPKNRKVKLSVTVKELGLSKHQFRRLRDLVGKRYNPGKDELTITSERFEHREENRKDCLRTLLSLIEEA-GKAN 379
The following BLAST results are available for this feature:
BLAST of NO03G00670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30014.11.800e-1774.24hypothetical protein Naga_100802g4 [Nannochloropsi... [more]
CBJ31376.14.000e-935.61conserved unknown protein [Ectocarpus siliculosus][more]
XP_010549102.11.200e-845.95PREDICTED: uncharacterized protein LOC104820380 [T... [more]
OMO73277.11.200e-846.75hypothetical protein COLO4_27184 [Corchorus olitor... [more]
OMO92662.11.200e-846.75hypothetical protein CCACVL1_06785 [Corchorus caps... [more]
EEF37513.11.500e-847.30conserved hypothetical protein [Ricinus communis][more]
XP_002524889.21.500e-847.30PREDICTED: uncharacterized protein LOC8286395 [Ric... [more]
XP_008393332.12.600e-845.95PREDICTED: uncharacterized protein LOC103455521 [M... [more]
XP_008360904.12.600e-845.95PREDICTED: uncharacterized protein LOC103424591 [M... [more]
XP_009360127.12.600e-845.95PREDICTED: uncharacterized protein LOC103950623 [P... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR051ngnoR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005889NSK005889Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00670.1NO03G00670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G00670.2NO03G00670.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571464gene_1245Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100802g4gene634Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00670.1NO03G00670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G00670.2NO03G00670.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00670 ID=NO03G00670|Name=NO03G00670|organism=Nannochloropsis oceanica|type=gene|length=3283bp
CCCCCCCTCAAGCACCTGCTCAGCCCCCACCTCTCCGTCCTGTCCCATGC
CATCGCCTCCTCCACCCCTACCTCCCACCTCCATACCCTCCGCAGCCCAA
GCCCGCTTCCTCCCTCCACGTCCCTCTGCTGCTGCTACTACTGCTGCTGC
TACTGCTGCTGCTGATACTCTTGCAGCAGCAGTTTTCTTCGTCCGCCCCT
CCTTCCTTCCTTTCCCGATTGCTGCTACGGCGGCTACCTCTTTCACTTCT
TCCCTCTCCTTCCCCTCTTCCTCCTCCTTTACCCCCTCCTCCTCCTCCCC
CTCCTCCTCCTCCTCATCCGCCACGGACTCCCTGCCCACGGCGGTAGGGG
CCGCAGACTTCTTTTTCTTCCTCTCGGGCGCCACGCCCAGATAACCACCA
CCACCACTGCTGCTGCTGCTGCTGCTGCTCGTCTCATGCTTGATTGCTCC
CACTTTCCCGTCTTTTTCCTCGGGGGAACAAGAGAAGGACGACAGCCGCT
TTCGCCTTTCACCACGCCTGCTTTGAGGCGACTGCTGCTGCTGCTGCCGT
TGCTGCTGGTCCTTCTCCGCGCCCTCTTGCCCTGCTGCCTCAGTTTGAGT
CATGGCACTTCTGCCTGTTATGATGGATTCTTTGCCTGCAACGCCCTTCT
CGCCCTCCACCCCACCCTCGCCTTTCCCTCCTTCCCTCCCTTCTTTGCTC
CTCGAAGAGGAGGGAAGCACCGACAATAACGACGGTGCTCCCAGGGCTGA
CACCGCCGGTAATGGTGGCGGTGGCGGCGATGACACCCGCAGCGGTGCCA
TACGTGCCGTCAGCTCCATTAAAGCTGTCGAGGCGTCCCATCCCCTGCGT
CTGAGTTGTCCGACGGCCGCCTTAACGAGCAGAGCCCGTCGGGCCTCTTC
CCAGGTCAGGTTGTAACACTCCTTCACTCTTTGGATCTCGGGGGTCGAGA
CACCTTTTCCCTTGGCTGAGGACAAGGACGAGGAGGAGGGAGGGGGGCTG
GTTGCGGACGTGAGGCGGGCTAGCAGGGTCTCGACGGCGGCAGCACGGGA
GAGGCCTTCCTGGTGTTGCAAGCGGTGCATCTCGGCTTGGACGGCTTGGC
GAAAGGTGCGGGTATGGCTGCGGGCCACGGCATCTGTAGAAAACAAAGAG
GAAGTGCTGCTCGTGGTCGTGGTCCAATCCAAAGGCACGTGCGTGTCCTG
CTTTCCTCCCCCACCCACGCTGTCGTCCATGATCTGTGGTGTTCGATCTG
GGATGATGATGGTGCGGAGAGTGAGAGAAGATGTGTGTACTGTGTGAATG
AATGTGTGAGTGTGTGTGCGTGTGTGTTGGGGCTGGCTGTGCACCGAGGC
ATGGTGCAATGCTGCTGGTGTTGGCATTGTGCATGCATTTCCTTCATGTG
CGACATCAATCAAGGTTCATAGGCATATGCATTCGAGAGCTGGCTCGTTG
AGAAAAGGAGGATGCGAAAAATCGCCTCGCCACCAGTCCTCTCTGATCAC
TGCTTCGCTTCGCCCTCTTTATGCTCTTCACCACCACCATACAGCTCCAC
TGCTTCATGGGCAGTAGAGTTAAGATTGATTCATGGCCGTGAGTGTATGG
TGGTCCCGGGCTGGTCGTGGTGGGGCCGCTGCAGTGCGTGCCCTAGATTG
GGGGGGGGGGTGGTTAAAAGCCATCCCCGGACGCAGTGCTGTTGCGAACT
ACCAGTCATGCGATGCACTGAATCTCAATGTTTACCAACCACATAAAAAA
ACAACACCACAGCCACCACAGCTATGCCATTTCCATGCACGGCTGCGCGC
AGCCTTTTGCCACGCTTCGTCTCGGGTTCGACCACCACTACGAGCTCTTC
ACCAGCATTGGCAGCAGCAGTCAGAGCATCGCCTTTTAGTACCATGAGTA
CGACATCACCATCGTCCTCCTCTTCCTCGTCTTTAGACTCCTTTATATCA
AGgtaaatttgcggacaagggaaggggtgtgatagtaatgatgtctttgt
gcgaccctactcaaacggcggacggcaatctctctccttttccttctgaa
cgcccaccacacaacctcgtacacacagCCCTCCTTCTTGCTCCTCCTCC
TCTCCCAATTCCGTCACCGGCAGCATCACCGCAATGAGCATACGTTGCTA
CTCCTCCGTCTCTTGTCGTGCGACAGCTGCACGGCTCATGACTTCTTCCT
CCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCTCCTCCCTCCGGCTTCTGG
GGCGGCTTACCACCAGGCGTCACCCCCCACCTTACGGACAACGACTCCTC
CCCTTCCTCCTCTGTCCCTCTCTTGCCCCCTCGGCAAGTCCCCGATGCCG
TCCTCCGCTTCACGACGGTGGCTTATCTTGACTCGTCTGCCTATATTCCC
TACCCTCACAAAGATGGAATTGACGCCCGTGCCTTCACCACCAATCCCGC
TAACTTCAAGgtagcggtcttttgatttttaattgcaattttcaattgtg
gtgttgctgtgccaagatcttgtgggggtgggagagagagtggcgtggga
tgtttctgcgaattgtctgcgcatttgcatccaaccgtttcccaccctcc
ctctttccctccctctttccctctctctttctctgttgtcactcacctct
ttccctccccaatttcctctcgccctcccttcatgcctcagGTGACCATG
CAGGTGTCGATGAAGGACCTGGGCCTCTCGGAACGGGAGCAAAAACGCTT
ACGCTGCCTGgtacgtatgctagtgctttcttccctccctccctccctcc
ctccctccctacctccctccctccctgtctcttttttgttccttcgtcat
aacttcacgctattttcgaacttgcgctcacccttctgtccttccttcct
ccccctactcctcctcacagGTGGGCAGCCGTTACAACCCTGGCCGTAGA
GACGTTACGCTGGTTTCAAATCGTTTCATGAATCGTGACCACAACAAGCA
GTACCTCATCTACTTGCTCGAGAACCTCGTCAGTGAGGCTCAGGGGAAAG
GGAACGCCAACGCCAGCGTGTGAGAGAGGAGAGGGAGGGAGGGAAAGAAG
AAGGGAGGGAGGGCGGGGTGTTCGGTGCATTGGGAAACAATAGGAGGGGG
TAAGGTACACGAATCGAGGAGAACGGCCACGACCAAATTTAAGACGAAGA
AGAAAATCAACAATAAGTACAAACACAACCTCAAGAAGATGATGACGAAG
AAGCGAGGAACATCCAAGCAGTCAGGGTGAGTG
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protein sequence of NO03G00670.1

>NO03G00670.1-protein ID=NO03G00670.1-protein|Name=NO03G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MPFPCTAARSLLPRFVSGSTTTTSSSPALAAAVRASPFSTMSTTSPSSSS
SSSLDSFISSPPSCSSSSPNSVTGSITAMSIRCYSSVSCRATAARLMTSS
SSSSSSSSSSSPPSGFWGGLPPGVTPHLTDNDSSPSSSVPLLPPRQVPDA
VLRFTTVAYLDSSAYIPYPHKDGIDARAFTTNPANFKVTMQVSMKDLGLS
EREQKRLRCLVGSRYNPGRRDVTLVSNRFMNRDHNKQYLIYLLENLVSEA
QGKGNANASV*
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protein sequence of NO03G00670.2

>NO03G00670.2-protein ID=NO03G00670.2-protein|Name=NO03G00670.2|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MPFPCTAARSLLPRFVSGSTTTTSSSPALAAAVRASPFSTMSTTSPSSSS
SSSLDSFISSPPSCSSSSPNSVTGSITAMSIRCYSSVSCRATAARLMTSS
SSSSSSSSSSSPPSGFWGGLPPGVTPHLTDNDSSPSSSVPLLPPRQVPDA
VLRFTTVAYLDSSAYIPYPHKDGIDARAFTTNPANFKVAVF*
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Synonyms
Publications