NO03G00600, NO03G00600 (gene) Nannochloropsis oceanica

Overview
NameNO03G00600
Unique NameNO03G00600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1897
Alignment locationchr3:194556..196452 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:194556..196452 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0043564Ku70:Ku80 complex
Vocabulary: Molecular Function
TermDefinition
GO:0042162telomeric DNA binding
GO:0003684damaged DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006303double-strand break repair via nonhomologous end joining
GO:0000723telomere maintenance
GO:0006310DNA recombination
Vocabulary: INTERPRO
TermDefinition
IPR036465vWFA_dom_sf
IPR016194SPOC-like_C_dom
IPR024193Ku80
Homology
BLAST of NO03G00600 vs. NCBI_GenBank
Match: EWM29484.1 (hypothetical protein Naga_100928g4, partial [Nannochloropsis gaditana])

HSP 1 Score: 223.0 bits (567), Expect = 2.100e-54
Identity = 107/172 (62.21%), Postives = 136/172 (79.07%), Query Frame = 0
Query:    1 MSQAWVFLLDGSVSMGDAYTHPSLLEALPSALQDPPPTKLQVAQEITTLLFAAQAVAEAGRKSKKCEAGIYVFGTDDTAHPLQELGEGYEHLLEVAPIQHLHLGCVAEARRLLPSQKGVEGDLLSGLILAVDRLRFRTGMMGKKCERHLVVVTDACSRLSSTDGLEETVQQL 173
            M QAW+FLLD S SMGD Y HP+LL+ LPS++Q PPP+KLQVAQEI TLL AAQAVAE+GR ++KC+ G   FGTD+T+HPL+ LG GYE+LLEV+P+  L  G + +   L PS+ GV+GD+L+GLILAVDRL+ RT ++GK+C RHLVVVTDACS L   +GLE  V+Q+
Sbjct:    1 MQQAWLFLLDTSTSMGDPYAHPALLDDLPSSIQVPPPSKLQVAQEIVTLLVAAQAVAESGRATRKCQIGACAFGTDETSHPLEALGAGYENLLEVSPLHPLDFGRLLDVLHLPPSRTGVKGDILAGLILAVDRLKARTEVLGKRCHRHLVVVTDACSALREVEGLEVVVEQV 172          
BLAST of NO03G00600 vs. NCBI_GenBank
Match: KZP15204.1 (SPOC domain-like protein [Fibularhizoctonia sp. CBS 109695])

HSP 1 Score: 73.2 bits (178), Expect = 2.700e-9
Identity = 59/180 (32.78%), Postives = 91/180 (50.56%), Query Frame = 0
Query:    6 VFLLDGSVSMGDAYTHPSLLEALPSALQDPPPTKLQVAQEITTLLFAAQAVAEAGRKSKKCEAGIYVFGTDDTAHPLQELGEGYEHLLEVAPIQHLHLGCVAEARRLLPSQKGVEGDLLSGLILAVDRLRFRTGMMGKKCERHLVVVTDACSRLSSTDGLEETVQQLIEMDVRLQFVGFN 186
            +FL+D S SMG   T       LP        T LQ + +   L    Q +   GRK+ +C  G+  FG+DDT + + E   GY+H+ E  PI   +   +A+   L PS+  V GD +  LI+ +D   F  G   K   R +V++TD  + +   D  EETV+++I++D+ L  VG +
Sbjct:   12 MFLVDISPSMGKMRT-----VELPGDQGTVEMTNLQWSLQFVKL--KIQEMIFDGRKTDQC--GVLTFGSDDTNNIVNERNGGYDHVSEFIPIAQPNYTTLAQLDELEPSE--VIGDPVDALIVGIDTQDFYLGKK-KSWTRKIVILTDGENPIEVED-WEETVKKMIDLDIILTVVGID 178          
BLAST of NO03G00600 vs. NCBI_GenBank
Match: XP_009530013.1 (hypothetical protein PHYSODRAFT_316299 [Phytophthora sojae] >EGZ16264.1 hypothetical protein PHYSODRAFT_316299 [Phytophthora sojae])

HSP 1 Score: 72.4 bits (176), Expect = 4.600e-9
Identity = 52/155 (33.55%), Postives = 81/155 (52.26%), Query Frame = 0
Query:   45 EITTLLFAAQAVAEAGRKSKKC------EAGIYVFGTDDTAHPL-QELGEG-YEHLLEVAPIQHLHLGCVAEARRLLPSQ-KGVEGDLLSGLILAVDRLRFRTGMMGKKCERHLVVVTDACSRLSSTDGLEETVQQLIEMDVRLQFVGFNLPSFT 191
            E+    FAA   A  G   +K       E GI  +G++DT + L +E GE  Y ++  V  I    L  +   R L PS+ +  + D+L GLI+A+D L  RT   GKK ++ L+V+TDA ++++    LE  V  +  M+V+LQ +G +    T
Sbjct:   39 ELQHTRFAASIAAVEGVVQQKLFFKPKDEVGIVAYGSEDTDNQLNEEQGESEYRNVQVVNSIDSPTLHMIKRLRELKPSRSEDTKVDILDGLIVALDLLFRRTD--GKKYDKRLMVITDAAAKIADAGDLESVVTMIQNMEVKLQVIGLDFQHTT 191          
BLAST of NO03G00600 vs. NCBI_GenBank
Match: ETI39867.1 (hypothetical protein F443_14591 [Phytophthora parasitica P1569])

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-8
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 0
Query:   65 KCEAGIYVFGTDDTAHPLQEL--GEGYEHLLEVAPIQHLHLGCVAEARRLLPS-QKGVEGDLLSGLILAVDRLRFRTGMMGKKCERHLVVVTDACSRLSSTDGLEETVQQLIEMDVRLQFVGFNLPSFT 191
            K E GI  +G++DT + L E    E Y+++  V  I    L  +   R L PS  K  + D+L G+I+A+D L  RT   GKK ++ L+++TDA ++++    LE  V  +  M+V+LQ +G +    T
Sbjct:   65 KDEVGIVAYGSEDTDNQLNEEQGEEEYKNVQVVNSIDSPTLHMIKRLRELKPSTSKETKVDILDGMIVALDLLFRRTD--GKKYDKRLMIITDAAAKIADAGDLESVVTMMQNMEVKLQVIGLDFQHTT 191          
BLAST of NO03G00600 vs. NCBI_GenBank
Match: ETK79992.1 (hypothetical protein L915_14226 [Phytophthora parasitica] >ETL33414.1 hypothetical protein L916_14125 [Phytophthora parasitica] >ETP09735.1 hypothetical protein F441_14457 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-8
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 0
Query:   65 KCEAGIYVFGTDDTAHPLQEL--GEGYEHLLEVAPIQHLHLGCVAEARRLLPS-QKGVEGDLLSGLILAVDRLRFRTGMMGKKCERHLVVVTDACSRLSSTDGLEETVQQLIEMDVRLQFVGFNLPSFT 191
            K E GI  +G++DT + L E    E Y+++  V  I    L  +   R L PS  K  + D+L G+I+A+D L  RT   GKK ++ L+++TDA ++++    LE  V  +  M+V+LQ +G +    T
Sbjct:   65 KDEVGIVAYGSEDTDNQLNEEQGEEEYKNVQVVNSIDSPTLHMIKRLRELKPSTSKETKVDILDGMIVALDLLFRRTD--GKKYDKRLMIITDAAAKIADAGDLESVVTMMQNMEVKLQVIGLDFQHTT 191          
BLAST of NO03G00600 vs. NCBI_GenBank
Match: ETL86709.1 (hypothetical protein L917_13909 [Phytophthora parasitica])

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-8
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 0
Query:   65 KCEAGIYVFGTDDTAHPLQEL--GEGYEHLLEVAPIQHLHLGCVAEARRLLPS-QKGVEGDLLSGLILAVDRLRFRTGMMGKKCERHLVVVTDACSRLSSTDGLEETVQQLIEMDVRLQFVGFNLPSFT 191
            K E GI  +G++DT + L E    E Y+++  V  I    L  +   R L PS  K  + D+L G+I+A+D L  RT   GKK ++ L+++TDA ++++    LE  V  +  M+V+LQ +G +    T
Sbjct:   65 KDEVGIVAYGSEDTDNQLNEEQGEEEYKNVQVVNSIDSPTLHMIKRLRELKPSTSKETKVDILDGMIVALDLLFRRTD--GKKYDKRLMIITDAAAKIADAGDLESVVTMMQNMEVKLQVIGLDFQHTT 191          
BLAST of NO03G00600 vs. NCBI_GenBank
Match: ETM39882.1 (hypothetical protein L914_14029 [Phytophthora parasitica])

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-8
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 0
Query:   65 KCEAGIYVFGTDDTAHPLQEL--GEGYEHLLEVAPIQHLHLGCVAEARRLLPS-QKGVEGDLLSGLILAVDRLRFRTGMMGKKCERHLVVVTDACSRLSSTDGLEETVQQLIEMDVRLQFVGFNLPSFT 191
            K E GI  +G++DT + L E    E Y+++  V  I    L  +   R L PS  K  + D+L G+I+A+D L  RT   GKK ++ L+++TDA ++++    LE  V  +  M+V+LQ +G +    T
Sbjct:   65 KDEVGIVAYGSEDTDNQLNEEQGEEEYKNVQVVNSIDSPTLHMIKRLRELKPSTSKETKVDILDGMIVALDLLFRRTD--GKKYDKRLMIITDAAAKIADAGDLESVVTMMQNMEVKLQVIGLDFQHTT 191          
BLAST of NO03G00600 vs. NCBI_GenBank
Match: XP_008910277.1 (hypothetical protein PPTG_15029 [Phytophthora parasitica INRA-310] >ETN04350.1 hypothetical protein PPTG_15029 [Phytophthora parasitica INRA-310])

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-8
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 0
Query:   65 KCEAGIYVFGTDDTAHPLQEL--GEGYEHLLEVAPIQHLHLGCVAEARRLLPS-QKGVEGDLLSGLILAVDRLRFRTGMMGKKCERHLVVVTDACSRLSSTDGLEETVQQLIEMDVRLQFVGFNLPSFT 191
            K E GI  +G++DT + L E    E Y+++  V  I    L  +   R L PS  K  + D+L G+I+A+D L  RT   GKK ++ L+++TDA ++++    LE  V  +  M+V+LQ +G +    T
Sbjct:   65 KDEVGIVAYGSEDTDNQLNEEQGEEEYKNVQVVNSIDSPTLHMIKRLRELKPSTSKETKVDILDGMIVALDLLFRRTD--GKKYDKRLMIITDAAAKIADAGDLESVVTMMQNMEVKLQVIGLDFQHTT 191          
BLAST of NO03G00600 vs. NCBI_GenBank
Match: ETO68595.1 (hypothetical protein F444_14597 [Phytophthora parasitica P1976])

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-8
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 0
Query:   65 KCEAGIYVFGTDDTAHPLQEL--GEGYEHLLEVAPIQHLHLGCVAEARRLLPS-QKGVEGDLLSGLILAVDRLRFRTGMMGKKCERHLVVVTDACSRLSSTDGLEETVQQLIEMDVRLQFVGFNLPSFT 191
            K E GI  +G++DT + L E    E Y+++  V  I    L  +   R L PS  K  + D+L G+I+A+D L  RT   GKK ++ L+++TDA ++++    LE  V  +  M+V+LQ +G +    T
Sbjct:   65 KDEVGIVAYGSEDTDNQLNEEQGEEEYKNVQVVNSIDSPTLHMIKRLRELKPSTSKETKVDILDGMIVALDLLFRRTD--GKKYDKRLMIITDAAAKIADAGDLESVVTMMQNMEVKLQVIGLDFQHTT 191          
BLAST of NO03G00600 vs. NCBI_GenBank
Match: ETP37839.1 (hypothetical protein F442_14420 [Phytophthora parasitica P10297])

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-8
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 0
Query:   65 KCEAGIYVFGTDDTAHPLQEL--GEGYEHLLEVAPIQHLHLGCVAEARRLLPS-QKGVEGDLLSGLILAVDRLRFRTGMMGKKCERHLVVVTDACSRLSSTDGLEETVQQLIEMDVRLQFVGFNLPSFT 191
            K E GI  +G++DT + L E    E Y+++  V  I    L  +   R L PS  K  + D+L G+I+A+D L  RT   GKK ++ L+++TDA ++++    LE  V  +  M+V+LQ +G +    T
Sbjct:   65 KDEVGIVAYGSEDTDNQLNEEQGEEEYKNVQVVNSIDSPTLHMIKRLRELKPSTSKETKVDILDGMIVALDLLFRRTD--GKKYDKRLMIITDAAAKIADAGDLESVVTMMQNMEVKLQVIGLDFQHTT 191          
The following BLAST results are available for this feature:
BLAST of NO03G00600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29484.12.100e-5462.21hypothetical protein Naga_100928g4, partial [Nanno... [more]
KZP15204.12.700e-932.78SPOC domain-like protein [Fibularhizoctonia sp. CB... [more]
XP_009530013.14.600e-933.55hypothetical protein PHYSODRAFT_316299 [Phytophtho... [more]
ETI39867.11.000e-834.11hypothetical protein F443_14591 [Phytophthora para... [more]
ETK79992.11.000e-834.11hypothetical protein L915_14226 [Phytophthora para... [more]
ETL86709.11.000e-834.11hypothetical protein L917_13909 [Phytophthora para... [more]
ETM39882.11.000e-834.11hypothetical protein L914_14029 [Phytophthora para... [more]
XP_008910277.11.000e-834.11hypothetical protein PPTG_15029 [Phytophthora para... [more]
ETO68595.11.000e-834.11hypothetical protein F444_14597 [Phytophthora para... [more]
ETP37839.11.000e-834.11hypothetical protein F442_14420 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR050ngnoR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005885NSK005885Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00600.1NO03G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|688gene_1238Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100928g4gene1145Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00600.1NO03G00600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00600 ID=NO03G00600|Name=NO03G00600|organism=Nannochloropsis oceanica|type=gene|length=1897bp
ACAGTGCACCAAAAAGCACACCGCCCACGCCATGTCACAAGCATGGGTCT
TCTTGCTTGACGGCAGCGTGAGCATGGGCGACGCCTACACGCATCCCTCC
CTCCTGGAGGCCTTGCCTTCAGCTTTGCAAGACCCTCCTCCCACCAAGCT
TCAGGTGGCCCAAGAAATAACCACCCTCCTCTTTGCCGCACAAGCCGTGG
CTGAAGCAGgcaagtctggaatgagatgagacgggatcaatgggagggtg
ctggacgagagatggaaaataaattgcaggagcgtcaagaaagcgcatac
gggaagtcccgttatcctgatgcgtcttcactcacaaatttcacaaatcc
atgtaatcgccctcacccccccctctctctttcacacagGGAGGAAAAGC
AAAAAATGTGAGGCGGGAATCTACGTATTCGGGACCGACGATACCGCCCA
CCCCCTGCAAGAGCTTGGGGAGGGCTACGAGCATCTGCTAGAAGTTGCCC
CTATCCAACATCTACACCTGGGATGTGTGGCTGAGGCCCGCCGTCTCCTT
CCCTCCCAGAAGGGGGTGGAAGGAGATCTACTTTCCGGGCTCATCCTGGC
AGTGGACCGTTTGAGGTTCAGGACGGGGATGATGGGCAAGAAGTGTGAGC
GGCATCTGGTGGTGGTGACTGATGCTTGCTCGCGTTTGTCGAGCACGGAC
GGGCTGGAAGAGACGGTGCAACAGgtcggggagggagggagggagggaga
gagagagggaggattttttttaaatgagctggatttgagcaggctttgtc
gaccactgtcctcattccatccctcccccccttctccctcccttcctgaa
ccccgccagCTGATCGAGATGGACGTGCGCTTACAATTTGTCGGCTTCAA
CCTCCCGTCATTCACCTCCTCCGAAGATTCCTCCTCCTCCTCTTCCGCCG
CCGCCACCGCCGCCGTCTCCGTCAAAAAAGAGAAAGAAGGAGAGGAGAAA
AAAAAGAAAAAAAAAGAAGAAGGAGAAGAGGAAGAAGGAGGAGGAACAGG
AGGAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGAAGGAGGAGGGG
GGGGAGGAGGAGGAGGAGAAGGAGGAGGAGAAGGAGGAAGAAGAAGAGCA
GCAGCAGCAGCAGAAGCAGCAGCAGGAGGAGAAGAAGGAGAAGGAGAAGG
AGGTGGAGGAGGAGGAGAAGAAGAAGGAGGAGGAGGAAGAACAGCAGCAG
GAGAAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCTGCAGGAGTAGAAGGA
GAAGGAGAAGAAATAAGAGCAACAGCCGCAACAGAATCCGAGGTCGACCA
TATCCGCCGTGAGAACTACGCCATGGTCTCCTCCATCATCACCTGCCTCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCC
TCCTCCTCCTCTCCACCACCCCCCCTCCTTGAAGCAGCCCCCTTCCTCTT
ACATCTCTCCCAGCGCGCCTTCCAAAAAGTCGGCCACAGCGCCAACAGCA
ACATGCCTTTCCTCCTTCCCTCCCTCCCCTTCACCCTTCGCGCGCAGGTC
TCTGCCCTGACGATGCCTGCCCGTCCTCCCTCCCTCAAGAAGTACGCTCG
ACACGACCCGAGCAAGCAAGCCCTAAAAGTGGATCGTCGCTACACGGTGG
AGGAAGGGGGGGAGGATGGGGGGGAGGGAGGGAGGGAGTTGGAGAGGAGG
GAGATGGTGAAGGGCTATCGGTATGGTGACGTGTACCTGCCCGTGGACTC
GACGGCGGAGAGAAGGCTCAAGTTGGAGGGGAGGGAGGGAGGGAAGGAGG
GAGGGGGGGAGGGGGGGGCGGGACGGTGGTTGAGATGCGGGTGCTAG
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protein sequence of NO03G00600.1

>NO03G00600.1-protein ID=NO03G00600.1-protein|Name=NO03G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp
MSQAWVFLLDGSVSMGDAYTHPSLLEALPSALQDPPPTKLQVAQEITTLL
FAAQAVAEAGRKSKKCEAGIYVFGTDDTAHPLQELGEGYEHLLEVAPIQH
LHLGCVAEARRLLPSQKGVEGDLLSGLILAVDRLRFRTGMMGKKCERHLV
VVTDACSRLSSTDGLEETVQQLIEMDVRLQFVGFNLPSFTSSEDSSSSSS
AAATAAVSVKKEKEGEEKKKKKKEEGEEEEGGGTGGGGGGGGAAAAGEGG
GGGGGGGEGGGEGGRRRAAAAAEAAAGGEEGEGEGGGGGGEEEGGGGRTA
AGEAAAAVAAAAAAGVEGEGEEIRATAATESEVDHIRRENYAMVSSIITC
LSSSSSSSSSSSSSSSFSSSSSPPPPLLEAAPFLLHLSQRAFQKVGHSAN
SNMPFLLPSLPFTLRAQVSALTMPARPPSLKKYARHDPSKQALKVDRRYT
VEEGGEDGGEGGRELERREMVKGYRYGDVYLPVDSTAERRLKLEGREGGK
EGGGEGGAGRWLRCGC*
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Synonyms
Publications