NO03G00570, NO03G00570 (gene) Nannochloropsis oceanica

Overview
NameNO03G00570
Unique NameNO03G00570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4624
Alignment locationchr3:182509..187132 -

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Properties
Property NameValue
DescriptionPolypyrimidine tract binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:182509..187132 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
BLAST of NO03G00570 vs. NCBI_GenBank
Match: XP_013774927.1 (polypyrimidine tract-binding protein 1-like isoform X4 [Limulus polyphemus])

HSP 1 Score: 158.7 bits (400), Expect = 6.500e-35
Identity = 120/374 (32.09%), Postives = 181/374 (48.40%), Query Frame = 0
Query:  319 PSNVLLARIAEGLFPITLDALYTLFSFYGPVQKLVMFNKGAGNQALVQYPDVASAQAAYEQVDRRNMYTDSNLIRVGFSTHQDIKVRANTDRTWDYTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPVDSGLKA---SLRERIISDMPNSWSTRLPGTDT---CVLVVQGLNMEMVGAEALAALFGLYGDVRRVKMM-PEQESALVEMEKPVQAYVAKWLLDASPLGGRIIKVKPSTQESIR-------DAH-AQDFTSFPLHGYRQYSSPRNPSYLSNLIEPTAVLRVANIAWDTSESEFRGLLTQQEGVSTVTRLLPSSHTSPALISFQSVEAAVHACILLHN-QEVNGKLLYVTFSDAT 677
            P+ VL   +   ++PITLD LY +FS  G V K++ F K    QAL+QYPDV +AQAA   +D +N+Y     +R+ +S   ++ V+ N D++ D+T                                            +GL     +L   + S        RLPG  +   CVL+V  LN EMV  +AL  LFG+YGDV RVK++  ++++ALV+M +P QA +A   LD   + G+ I+V PS  + ++       DA   +DFTS PLH   ++  P + +Y  N+  P+A L ++NI    +E + +       G     +  P      ALI   SVE +V A I +HN Q  +   L V+FS +T
Sbjct:  155 PNTVLRVIVDNQIYPITLDVLYQIFSRVGKVLKIITFTKNNTFQALIQYPDVITAQAAKLSLDGQNIYNACCTLRIDYSKLTNLNVKYNNDKSRDFTNPTLPTGDIGLDSLGFGGAMSMMGSPFAGLPSLGAPLTAAYSAAAGLPLGAFALPPAVASATFGLAGFRLPGQQSFGGCVLLVSNLNEEMVTPDALFTLFGVYGDVIRVKILFNKKDNALVQMSEPHQAQLALTNLDKIKVYGKEIRVNPSKHQLVQMPKEGQPDAGLTKDFTSSPLH---RFKKPGSKNY-QNIYPPSATLHLSNIPASVTEEDIKTAFQDTGGSVVAFKFFPKDR-KMALIQMGSVEESVIALIKMHNYQLADSSHLRVSFSKST 523          
BLAST of NO03G00570 vs. NCBI_GenBank
Match: XP_022242064.1 (polypyrimidine tract-binding protein 1-like isoform X1 [Limulus polyphemus])

HSP 1 Score: 158.7 bits (400), Expect = 6.500e-35
Identity = 120/374 (32.09%), Postives = 181/374 (48.40%), Query Frame = 0
Query:  319 PSNVLLARIAEGLFPITLDALYTLFSFYGPVQKLVMFNKGAGNQALVQYPDVASAQAAYEQVDRRNMYTDSNLIRVGFSTHQDIKVRANTDRTWDYTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPVDSGLKA---SLRERIISDMPNSWSTRLPGTDT---CVLVVQGLNMEMVGAEALAALFGLYGDVRRVKMM-PEQESALVEMEKPVQAYVAKWLLDASPLGGRIIKVKPSTQESIR-------DAH-AQDFTSFPLHGYRQYSSPRNPSYLSNLIEPTAVLRVANIAWDTSESEFRGLLTQQEGVSTVTRLLPSSHTSPALISFQSVEAAVHACILLHN-QEVNGKLLYVTFSDAT 677
            P+ VL   +   ++PITLD LY +FS  G V K++ F K    QAL+QYPDV +AQAA   +D +N+Y     +R+ +S   ++ V+ N D++ D+T                                            +GL     +L   + S        RLPG  +   CVL+V  LN EMV  +AL  LFG+YGDV RVK++  ++++ALV+M +P QA +A   LD   + G+ I+V PS  + ++       DA   +DFTS PLH   ++  P + +Y  N+  P+A L ++NI    +E + +       G     +  P      ALI   SVE +V A I +HN Q  +   L V+FS +T
Sbjct:  174 PNTVLRVIVDNQIYPITLDVLYQIFSRVGKVLKIITFTKNNTFQALIQYPDVITAQAAKLSLDGQNIYNACCTLRIDYSKLTNLNVKYNNDKSRDFTNPTLPTGDIGLDSLGFGGAMSMMGSPFAGLPSLGAPLTAAYSAAAGLPLGAFALPPAVASATFGLAGFRLPGQQSFGGCVLLVSNLNEEMVTPDALFTLFGVYGDVIRVKILFNKKDNALVQMSEPHQAQLALTNLDKIKVYGKEIRVNPSKHQLVQMPKEGQPDAGLTKDFTSSPLH---RFKKPGSKNY-QNIYPPSATLHLSNIPASVTEEDIKTAFQDTGGSVVAFKFFPKDR-KMALIQMGSVEESVIALIKMHNYQLADSSHLRVSFSKST 542          
BLAST of NO03G00570 vs. NCBI_GenBank
Match: XP_022242067.1 (polypyrimidine tract-binding protein 1-like isoform X3 [Limulus polyphemus])

HSP 1 Score: 158.7 bits (400), Expect = 6.500e-35
Identity = 120/374 (32.09%), Postives = 181/374 (48.40%), Query Frame = 0
Query:  319 PSNVLLARIAEGLFPITLDALYTLFSFYGPVQKLVMFNKGAGNQALVQYPDVASAQAAYEQVDRRNMYTDSNLIRVGFSTHQDIKVRANTDRTWDYTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPVDSGLKA---SLRERIISDMPNSWSTRLPGTDT---CVLVVQGLNMEMVGAEALAALFGLYGDVRRVKMM-PEQESALVEMEKPVQAYVAKWLLDASPLGGRIIKVKPSTQESIR-------DAH-AQDFTSFPLHGYRQYSSPRNPSYLSNLIEPTAVLRVANIAWDTSESEFRGLLTQQEGVSTVTRLLPSSHTSPALISFQSVEAAVHACILLHN-QEVNGKLLYVTFSDAT 677
            P+ VL   +   ++PITLD LY +FS  G V K++ F K    QAL+QYPDV +AQAA   +D +N+Y     +R+ +S   ++ V+ N D++ D+T                                            +GL     +L   + S        RLPG  +   CVL+V  LN EMV  +AL  LFG+YGDV RVK++  ++++ALV+M +P QA +A   LD   + G+ I+V PS  + ++       DA   +DFTS PLH   ++  P + +Y  N+  P+A L ++NI    +E + +       G     +  P      ALI   SVE +V A I +HN Q  +   L V+FS +T
Sbjct:  161 PNTVLRVIVDNQIYPITLDVLYQIFSRVGKVLKIITFTKNNTFQALIQYPDVITAQAAKLSLDGQNIYNACCTLRIDYSKLTNLNVKYNNDKSRDFTNPTLPTGDIGLDSLGFGGAMSMMGSPFAGLPSLGAPLTAAYSAAAGLPLGAFALPPAVASATFGLAGFRLPGQQSFGGCVLLVSNLNEEMVTPDALFTLFGVYGDVIRVKILFNKKDNALVQMSEPHQAQLALTNLDKIKVYGKEIRVNPSKHQLVQMPKEGQPDAGLTKDFTSSPLH---RFKKPGSKNY-QNIYPPSATLHLSNIPASVTEEDIKTAFQDTGGSVVAFKFFPKDR-KMALIQMGSVEESVIALIKMHNYQLADSSHLRVSFSKST 529          
BLAST of NO03G00570 vs. NCBI_GenBank
Match: XP_022242066.1 (polypyrimidine tract-binding protein 1-like isoform X2 [Limulus polyphemus])

HSP 1 Score: 158.7 bits (400), Expect = 6.500e-35
Identity = 120/374 (32.09%), Postives = 181/374 (48.40%), Query Frame = 0
Query:  319 PSNVLLARIAEGLFPITLDALYTLFSFYGPVQKLVMFNKGAGNQALVQYPDVASAQAAYEQVDRRNMYTDSNLIRVGFSTHQDIKVRANTDRTWDYTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPVDSGLKA---SLRERIISDMPNSWSTRLPGTDT---CVLVVQGLNMEMVGAEALAALFGLYGDVRRVKMM-PEQESALVEMEKPVQAYVAKWLLDASPLGGRIIKVKPSTQESIR-------DAH-AQDFTSFPLHGYRQYSSPRNPSYLSNLIEPTAVLRVANIAWDTSESEFRGLLTQQEGVSTVTRLLPSSHTSPALISFQSVEAAVHACILLHN-QEVNGKLLYVTFSDAT 677
            P+ VL   +   ++PITLD LY +FS  G V K++ F K    QAL+QYPDV +AQAA   +D +N+Y     +R+ +S   ++ V+ N D++ D+T                                            +GL     +L   + S        RLPG  +   CVL+V  LN EMV  +AL  LFG+YGDV RVK++  ++++ALV+M +P QA +A   LD   + G+ I+V PS  + ++       DA   +DFTS PLH   ++  P + +Y  N+  P+A L ++NI    +E + +       G     +  P      ALI   SVE +V A I +HN Q  +   L V+FS +T
Sbjct:  173 PNTVLRVIVDNQIYPITLDVLYQIFSRVGKVLKIITFTKNNTFQALIQYPDVITAQAAKLSLDGQNIYNACCTLRIDYSKLTNLNVKYNNDKSRDFTNPTLPTGDIGLDSLGFGGAMSMMGSPFAGLPSLGAPLTAAYSAAAGLPLGAFALPPAVASATFGLAGFRLPGQQSFGGCVLLVSNLNEEMVTPDALFTLFGVYGDVIRVKILFNKKDNALVQMSEPHQAQLALTNLDKIKVYGKEIRVNPSKHQLVQMPKEGQPDAGLTKDFTSSPLH---RFKKPGSKNY-QNIYPPSATLHLSNIPASVTEEDIKTAFQDTGGSVVAFKFFPKDR-KMALIQMGSVEESVIALIKMHNYQLADSSHLRVSFSKST 541          
BLAST of NO03G00570 vs. NCBI_GenBank
Match: XP_022242068.1 (polypyrimidine tract-binding protein 1-like isoform X5 [Limulus polyphemus])

HSP 1 Score: 158.7 bits (400), Expect = 6.500e-35
Identity = 120/374 (32.09%), Postives = 181/374 (48.40%), Query Frame = 0
Query:  319 PSNVLLARIAEGLFPITLDALYTLFSFYGPVQKLVMFNKGAGNQALVQYPDVASAQAAYEQVDRRNMYTDSNLIRVGFSTHQDIKVRANTDRTWDYTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPVDSGLKA---SLRERIISDMPNSWSTRLPGTDT---CVLVVQGLNMEMVGAEALAALFGLYGDVRRVKMM-PEQESALVEMEKPVQAYVAKWLLDASPLGGRIIKVKPSTQESIR-------DAH-AQDFTSFPLHGYRQYSSPRNPSYLSNLIEPTAVLRVANIAWDTSESEFRGLLTQQEGVSTVTRLLPSSHTSPALISFQSVEAAVHACILLHN-QEVNGKLLYVTFSDAT 677
            P+ VL   +   ++PITLD LY +FS  G V K++ F K    QAL+QYPDV +AQAA   +D +N+Y     +R+ +S   ++ V+ N D++ D+T                                            +GL     +L   + S        RLPG  +   CVL+V  LN EMV  +AL  LFG+YGDV RVK++  ++++ALV+M +P QA +A   LD   + G+ I+V PS  + ++       DA   +DFTS PLH   ++  P + +Y  N+  P+A L ++NI    +E + +       G     +  P      ALI   SVE +V A I +HN Q  +   L V+FS +T
Sbjct:  154 PNTVLRVIVDNQIYPITLDVLYQIFSRVGKVLKIITFTKNNTFQALIQYPDVITAQAAKLSLDGQNIYNACCTLRIDYSKLTNLNVKYNNDKSRDFTNPTLPTGDIGLDSLGFGGAMSMMGSPFAGLPSLGAPLTAAYSAAAGLPLGAFALPPAVASATFGLAGFRLPGQQSFGGCVLLVSNLNEEMVTPDALFTLFGVYGDVIRVKILFNKKDNALVQMSEPHQAQLALTNLDKIKVYGKEIRVNPSKHQLVQMPKEGQPDAGLTKDFTSSPLH---RFKKPGSKNY-QNIYPPSATLHLSNIPASVTEEDIKTAFQDTGGSVVAFKFFPKDR-KMALIQMGSVEESVIALIKMHNYQLADSSHLRVSFSKST 522          
BLAST of NO03G00570 vs. NCBI_GenBank
Match: XP_012288450.1 (polypyrimidine tract-binding protein 2 isoform X7 [Orussus abietinus])

HSP 1 Score: 157.9 bits (398), Expect = 1.100e-34
Identity = 112/372 (30.11%), Postives = 186/372 (50.00%), Query Frame = 0
Query:  319 PSNVLLARIAEGLFPITLDALYTLFSFYGPVQKLVMFNKGAGNQALVQYPDVASAQAAYEQVDRRNMYTDSNLIRVGFSTHQDIKVRANTDRTWDYTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPVDSGLKASLRERI--ISDMPNSWSTRLPGT--DTCVLVVQGLNMEMVGAEALAALFGLYGDVRRVKMM-PEQESALVEMEKPVQAYVAKWLLDASPLGGRIIKVKPSTQESIR-------DAH-AQDFTSFPLHGYRQYSSPRNPSYLSNLIEPTAVLRVANIAWDTSESEFRGLLTQQEGVSTVTRLLPSSHTSPALISFQSVEAAVHACILLHNQEVN-GKLLYVTFSDAT 677
            P+ VL   I   ++PI+LD LY +F+ +G V K+V F K +  QAL+QYPD+ SAQ A   +D +N+Y     +R+ +S  Q + V+ N D++ DYT                                        GP +          I   +    +   R+PG+   +CVL+V  LN EMV  +AL  LFG+YGDV+RVK++  +++SAL+++ +P QA++A   +D   + G+ I+V  S  ++++       DA   +D+T+ PLH   ++  P + +Y  N+  P++ L ++NI    SE E +   T+        +  P      ALI   S++ AV A I +HN +++    L V+FS ++
Sbjct:  198 PNTVLRVIIEHMIYPISLDILYQIFTRFGKVLKIVTFTKNSSFQALIQYPDMLSAQTAKFSLDGQNIYNSCCTLRIDYSKMQSLNVKYNNDKSRDYTNPTLPTGDANLDAASLALGGASSVLASPFAAMHGLPSPLAGPYNGVAPPGSLAGIGGFNLGAGALGVRVPGSPQPSCVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQLAEPHQAHLAMTHMDKLRVFGKQIRVMLSKHQTVQLPKEGQPDAGLTKDYTNSPLH---RFKKPGSKNY-QNIYPPSSTLHLSNIPATVSEEEIKDAFTKNGFTVKAFKFFPKDR-KMALIQMSSMDDAVAALIKMHNYQLSESNHLRVSFSKSS 564          
BLAST of NO03G00570 vs. NCBI_GenBank
Match: XP_012288449.1 (polypyrimidine tract-binding protein 2 isoform X6 [Orussus abietinus])

HSP 1 Score: 155.6 bits (392), Expect = 5.500e-34
Identity = 110/376 (29.26%), Postives = 186/376 (49.47%), Query Frame = 0
Query:  319 PSNVLLARIAEGLFPITLDALYTLFSFYGPVQKLVMFNKGAGNQALVQYPDVASAQAAYEQVDRRNMYTDSNLIRVGFSTHQDIKVRANTDRTWDYTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPVDSGLKASLRERIISDM------PNSWSTRLPGT--DTCVLVVQGLNMEMVGAEALAALFGLYGDVRRVKMM-PEQESALVEMEKPVQAYVAKWLLDASPLGGRIIKVKPSTQESIR-------DAH-AQDFTSFPLHGYRQYSSPRNPSYLSNLIEPTAVLRVANIAWDTSESEFRGLLTQQEGVSTVTRLLPSSHTSPALISFQSVEAAVHACILLHNQEVN-GKLLYVTFSDAT 677
            P+ VL   I   ++PI+LD LY +F+ +G V K+V F K +  QAL+QYPD+ SAQ A   +D +N+Y     +R+ +S  Q + V+ N D++ DYT                                         P+            ++ +        +   R+PG+   +CVL+V  LN EMV  +AL  LFG+YGDV+RVK++  +++SAL+++ +P QA++A   +D   + G+ I+V  S  ++++       DA   +D+T+ PLH   ++  P + +Y  N+  P++ L ++NI    SE E +   T+        +  P      ALI   S++ AV A I +HN +++    L V+FS ++
Sbjct:  198 PNTVLRVIIEHMIYPISLDILYQIFTRFGKVLKIVTFTKNSSFQALIQYPDMLSAQTAKFSLDGQNIYNSCCTLRIDYSKMQSLNVKYNNDKSRDYTNPTLPTGDANLDAASLALGESIAGASSVLASPFAAMHGLPSPLAGPYNGVAPPGSLAGIGGFNLGAGALGVRVPGSPQPSCVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQLAEPHQAHLAMTHMDKLRVFGKQIRVMLSKHQTVQLPKEGQPDAGLTKDYTNSPLH---RFKKPGSKNY-QNIYPPSSTLHLSNIPATVSEEEIKDAFTKNGFTVKAFKFFPKDR-KMALIQMSSMDDAVAALIKMHNYQLSESNHLRVSFSKSS 568          
BLAST of NO03G00570 vs. NCBI_GenBank
Match: XP_012288448.1 (polypyrimidine tract-binding protein 1 isoform X5 [Orussus abietinus])

HSP 1 Score: 151.8 bits (382), Expect = 7.900e-33
Identity = 112/377 (29.71%), Postives = 186/377 (49.34%), Query Frame = 0
Query:  319 PSNVLLARIAEGLFPITLDALYTLFSFYGPVQKLVMFNKGAGNQALVQYPDVASAQAAYEQVDRRNMYTDSNLIRVGFSTHQDIKVRANTDRTWDYTK-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPVDSGLKASLRERI--ISDMPNSWSTRLPGT--DTCVLVVQGLNMEMVGAEALAALFGLYGDVRRVKMM-PEQESALVEMEKPVQAYVAKWLLDASPLGGRIIKVKPSTQESIR-------DAH-AQDFTSFPLHGYRQYSSPRNPSYLSNLIEPTAVLRVANIAWDTSESEFRGLLTQQEGVSTVTRLLPSSHTSPALISFQSVEAAVHACILLHNQEVN-GKLLYVTFSDAT 677
            P+ VL   I   ++PI+LD LY +F+ +G V K+V F K +  QAL+QYPD+ SAQ A   +D +N+Y     +R+ +S  Q + V+ N D++ DYT                                             GP +          I   +    +   R+PG+   +CVL+V  LN EMV  +AL  LFG+YGDV+RVK++  +++SAL+++ +P QA++A   +D   + G+ I+V  S  ++++       DA   +D+T+ PLH   ++  P + +Y  N+  P++ L ++NI    SE E +   T+        +  P      ALI   S++ AV A I +HN +++    L V+FS ++
Sbjct:  198 PNTVLRVIIEHMIYPISLDILYQIFTRFGKVLKIVTFTKNSSFQALIQYPDMLSAQTAKFSLDGQNIYNSCCTLRIDYSKMQSLNVKYNNDKSRDYTNPTLPTGDANLDAASLALGVESIAGASSVLASPFAAMHGLPSPLAGPYNGVAPPGSLAGIGGFNLGAGALGVRVPGSPQPSCVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQLAEPHQAHLAMTHMDKLRVFGKQIRVMLSKHQTVQLPKEGQPDAGLTKDYTNSPLH---RFKKPGSKNY-QNIYPPSSTLHLSNIPATVSEEEIKDAFTKNGFTVKAFKFFPKDR-KMALIQMSSMDDAVAALIKMHNYQLSESNHLRVSFSKSS 569          
BLAST of NO03G00570 vs. NCBI_GenBank
Match: XP_012288445.1 (polypyrimidine tract-binding protein 1 isoform X3 [Orussus abietinus])

HSP 1 Score: 150.2 bits (378), Expect = 2.300e-32
Identity = 114/393 (29.01%), Postives = 187/393 (47.58%), Query Frame = 0
Query:  319 PSNVLLARIAEGLFPITLDALYTLFSFYGPVQKLVMFNKGAGNQALVQYPDVASAQAAYEQVDRRNMYTDSNLIRVGFSTHQDIKVRANTDRTWDYTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPVD---------SGLKASLRERIISDMP--------------NSWSTRLPGT--DTCVLVVQGLNMEMVGAEALAALFGLYGDVRRVKMM-PEQESALVEMEKPVQAYVAKWLLDASPLGGRIIKVKPSTQESIR-------DAH-AQDFTSFPLHGYRQYSSPRNPSYLSNLIEPTAVLRVANIAWDTSESEFRGLLTQQEGVSTVTRLLPSSHTSPALISFQSVEAAVHACILLHNQEVN-GKLLYVTFSDAT 677
            P+ VL   I   ++PI+LD LY +F+ +G V K+V F K +  QAL+QYPD+ SAQ A   +D +N+Y     +R+ +S  Q + V+ N D++ DYT                                        G             GL + L        P               +   R+PG+   +CVL+V  LN EMV  +AL  LFG+YGDV+RVK++  +++SAL+++ +P QA++A   +D   + G+ I+V  S  ++++       DA   +D+T+ PLH   ++  P + +Y  N+  P++ L ++NI    SE E +   T+        +  P      ALI   S++ AV A I +HN +++    L V+FS ++
Sbjct:  198 PNTVLRVIIEHMIYPISLDILYQIFTRFGKVLKIVTFTKNSSFQALIQYPDMLSAQTAKFSLDGQNIYNSCCTLRIDYSKMQSLNVKYNNDKSRDYTNPTLPTGDANLDAASLALGGELLPQLLLGAAGTQPRARIPGASSVLASPFAAMHGLPSPLAGPYNGVAPPGSLAGIGGFNLGAGALGVRVPGSPQPSCVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQLAEPHQAHLAMTHMDKLRVFGKQIRVMLSKHQTVQLPKEGQPDAGLTKDYTNSPLH---RFKKPGSKNY-QNIYPPSSTLHLSNIPATVSEEEIKDAFTKNGFTVKAFKFFPKDR-KMALIQMSSMDDAVAALIKMHNYQLSESNHLRVSFSKSS 585          
BLAST of NO03G00570 vs. NCBI_GenBank
Match: XP_011495872.1 (PREDICTED: polypyrimidine tract-binding protein 1 isoform X4 [Ceratosolen solmsi marchali])

HSP 1 Score: 149.4 bits (376), Expect = 3.900e-32
Identity = 133/385 (34.55%), Postives = 204/385 (52.99%), Query Frame = 0
Query:  305 SVQSPLDLRPGTTEPSNVLLARIAEGLFPITLDALYTLFSFYGPVQKLVMFNKGAGNQALVQYPDVASAQAAYEQVDRRNMYTDSNLIRVGFSTHQDIKVRANTDRTWDYTK----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPVDSGLKASLRERIISDMPNSWSTRLPGT--DTCVLVVQGLNMEMVGAEALAALFGLYGDVRRVKMM-PEQESALVEMEKPVQAYVAKWLLDASPLGGRIIKVKPSTQESI---RDAH-----AQDFTSFPLHGYRQYSSPRNPSYLSNLIEPTAVLRVANIAWDTSESEFRGLLTQQEGVSTVTRLLPSSHTSPALISFQSVEAAVHACILLHNQEVN-GKLLYVTFS 674
            S Q P+        P+ VL   +   ++PI+LD LY +F+ YG V K+V F K    QAL+QY D+ SAQ A   +D +N+Y     +R+ +S  Q++ V+ N D++ DYT                        XXXXXXXXXXXXXXXXXXX G   +G  A L    +     +   R+ G+   +CVL++  LN EMV  +AL  LFG+YGDV+RVK++  +++SALV++ +  QA++A   +D   + G+ I+V  S  +++   RD        +D+T+ PLH   ++  P + +Y  N+  P+A L ++NI    SE E +   T+        +  P      ALI   S++ AV A I +HN +++    L V+FS
Sbjct:  181 SNQGPVQGSDTQGGPNTVLRVIVEHMIYPISLDILYQIFTRYGKVLKIVTFTKNNSFQALIQYTDMLSAQTAKFNLDGQNIYNSCCTLRIDYSKMQNLNVKFNNDKSRDYTNPTLPTGDANLDAASLALGGAPSVXXXXXXXXXXXXXXXXXXXNGVPPAGGLAGLGSFNLG--AGALGVRVSGSPQQSCVLLISNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALVQLAESHQAHLAMTHMDKLKVFGKAIRVTLSKHQTVQLPRDGQPDAGLTKDYTNSPLH---RFKKPGSKNY-QNIYPPSATLHLSNIPATVSEDEIKEAFTKNSFTVKAFKFFPKDR-KMALIQMPSMDEAVSALIKMHNYQLSESNHLRVSFS 558          
The following BLAST results are available for this feature:
BLAST of NO03G00570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_013774927.16.500e-3532.09polypyrimidine tract-binding protein 1-like isofor... [more]
XP_022242064.16.500e-3532.09polypyrimidine tract-binding protein 1-like isofor... [more]
XP_022242067.16.500e-3532.09polypyrimidine tract-binding protein 1-like isofor... [more]
XP_022242066.16.500e-3532.09polypyrimidine tract-binding protein 1-like isofor... [more]
XP_022242068.16.500e-3532.09polypyrimidine tract-binding protein 1-like isofor... [more]
XP_012288450.11.100e-3430.11polypyrimidine tract-binding protein 2 isoform X7 ... [more]
XP_012288449.15.500e-3429.26polypyrimidine tract-binding protein 2 isoform X6 ... [more]
XP_012288448.17.900e-3329.71polypyrimidine tract-binding protein 1 isoform X5 ... [more]
XP_012288445.12.300e-3229.01polypyrimidine tract-binding protein 1 isoform X3 ... [more]
XP_011495872.13.900e-3234.55PREDICTED: polypyrimidine tract-binding protein 1 ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR050ngnoR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005882NSK005882Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00570.2NO03G00570.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G00570.1NO03G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|635514gene_1234Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00570.2NO03G00570.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G00570.1NO03G00570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00570 ID=NO03G00570|Name=NO03G00570|organism=Nannochloropsis oceanica|type=gene|length=4624bp
CTGAAAGTTTGATGAAACGTGCCCCCAGTTTTGACAAGCCCAGCTAGAGC
TAGCTTATGTCATCCAAACACACAAACCTCCACCACCCCTCCATAAAGAC
GCTTGGGAATGTAGTCCCTATGTTGGTCCTATGCTGAGGTCTCGGGTCCT
TGTTTAGGCCTCGCATTCCGACGACCCTTCACTTCTGCTTATTCTCTTCG
TTGCCTTCCATCTTACCTCTCCTTTCTCTATCACATACCTACCAACCATC
CACTCATTCCGTGCAGGTGCGTGTGCCAAATATGACAAGGGCGACAAGGG
GTGATAAACATCTGTGAAGGAAGTGGGTGTGGGACTCAACCTTTTCCCTC
CTTCTCCACCCTGCCATCATCACCACGAACGACCGGGGTAGAGAGAACGA
GGGCCGgtatagtataatttgtctgcatatccacatgtccgcttcctgga
tcagcaagaagagagtgtttgatattgcattatactcccccggcacccca
tgtcacattcacctcacaaccatgccaacttaccattcagAGTGAGAAGC
ATGCCGCCCAAGCGCAGCACCACCTCGGAGGCGGGGCGTGGACATGGCAG
GGGCCGAGGGAGAAAGGCAGCTGCCACGGACAACGATGCAGATTCTTTTC
CGCAGGATGAGGAGCAAGGAAAGGACGAGGAGCCGGGGCAGGAGCAGCAA
GAGCAGGAGGTCGCACAAACTTTTAAGTCTTCTTCACGACGGGGTCGAGT
AGCGGCAGCTGCTGCAACTGCTGCTGCTGCGGCCAAGGTAGAGGCAGACG
TGGAGGAGGAGGAGGCACATGAATCTGCCGGACGGGTTTCACCACGGCGG
TCGGTGTCGCCGGAGAAGAAGAGAAGGAATGCCCGCGGTGAAGGAGGCGG
AGAACCAGCAGAAGCAGTTGCAACAGCGGCACCGGCGACGAGGAAGAAAC
GTGGAGCCCCGGAGACGGCTACGAATGGGAAAGGTGGGGGGAAGGAAAAG
GAAGAGGGGGCGCCTATGGAGGAGGAAGAGCAGCCGCAGGATCAAGTTCC
ATCTCAACCTGCTAGTCCGCAACGGAAGCGGTCGAAGAAAGGAGGAGGAG
GAGGAGCATCAGCAGGAGCAGCAGCAGGAGCAGCAGCAGCGCCCCTACCA
GCTTATACGACCCCCCTCATGACGGCGTCAGAGGAGGCAGAAGCAGGAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGAAGCATACCACTACCATC
AACAGCACGAGCTGCTACCGAAGGAGGAAGAAGGACAGCCAGCAGCAGTG
GAAGAGCAGGCATCAGAAGGAATGGAAAGAGACGGAGGGACAGGGAGAAG
GGGGATGAGGGGAGGGGGCGGAAGAGGAGGTGCAAGGGGGCGAGGGGGAG
GACGAGGCCGAGGACGAGGAGGGCGGACCATCCCCTCCGCGCGATACGAC
CGTCTTTgtaagtaacacatgggccgtccaatcttctttttccacccctc
atccttactcttacccctccccctctccctcccccccctctccagTGGGT
AGCGTGCAAAGCCCCCTCGACCTCCGTCCTGGTACCACGGAGCCTTCCAA
CGTTCTCCTCGCCCGAATCGCCGAGGGTCTCTTTCCCATCACGCTCGACG
CGCTCTACACCCTCTTCTCCTTCTATGGTCCGGTCCAGAAACTCGTCATG
TTCAACAAGGGCGCCGGGAACCAGgttggctaccccctgtccctccccct
gtccctccctcttttcctccctcttcgtccgtcccatgcagcttccctcc
ctctactcaactcctcgctcctccctccctccctccctccctctctcccc
cagGCCCTGGTGCAGTATCCCGACGTCGCCTCCGCCCAAGCCGCCTACGA
GCAGGTGGACCGTCGAAACATGTACACCGACAGCAACCTTATCCGGGTCG
GATTTTCCACCCACCAGGACATCAAAGTGgtgcgtccctccctccttcct
attcgctctttcccccgttctcacccctccctccctccctccttccctcc
atcattccttccttgtcattcccccgttctcacccctccctccctccctc
cctccctccatcattcctttcttgtcattttcccgttctcacccctccct
ttcctccctccttccctccctccctccctccctccatcaatccttccttt
cttgtcattcccccgttctcacccctccctccctccccccctccctccct
ccctcagCGCGCCAACACGGACCGAACGTGGGACTACACGAAGAAGAAGG
ATGCTTCTGCCCCTGCCACCTCCACCACCTCCACTGACACCGCTGCTGCT
GGCGGTGCTACTACCTCTTCCTCCCCCTCTGCCACTGCTAGTGCGGCTGC
AGCCGTCGTAGGCCCTGTCGATAGgtacctcgctttcctccctccctccc
tccctccctccctccctccctccctccctccctccctccctccctccctc
cctccctccctccctccctccctccctccctccctccctccctccctccc
tccctccctccctccctccctcccttcgcccaaccccccacaaacaatgc
attcaattcctatcgccgtctatatgatggtttcttgtccctccctccct
ccctccctttccccctccctccttcagtatacccaactctcatccctccc
tccctccctcccccccctacacagTGGGCTCAAGGCCTCCCTCCGTGAGA
GAATCATCAGCGACATGCCCAACAGCTGGAGCACTCGATTACCCGGTACC
GACACCTGTGTCCTTGTCGTACAGgtagggggctccctccctccctccct
ccctcccactcatgggcagctctttggaagagttgcagagaataacagac
gtgaagggaccatgccactcatcccttcctccctccctcccctccttcca
gGGCCTGAACATGGAGATGGTGGGGGCTGAGGCGTTGGCCGCCCTCTTTG
GGCTCTATGGGGATGTGCGCCGCGTGAAGATGATGCCCGAGCAGGAGAGC
GCTTTGGTGGAGgtgaggatgggaggggagggagggaggacagggaggga
aggaggaaggagaaggaggctcggagacttggactagtgggtcaccaaca
cacctatccttccttccttccttccttccttcctccctccctttcgacag
ATGGAGAAGCCCGTGCAGGCTTACGTTGCCAAATGGCTCCTGGACGCCTC
TCCCCTGGGAGGGAGAATCATTAAGgtacgtaccctcccccccttccctc
acctcttcctcccctccttccatcccctccttccctcccctccttccatt
acctcttcctcccctccttccctcacctcttcctccccttcttccctcac
ctctttctcccctccttcccttccctccttccctccctcccctccttccc
ttcactttctcccctccttccctctcctcttttcctcccctccttccctc
cctccttcccttccctccttccctcccctccttccctcccttccttccct
ctccttccctcccctccttccctttcctccttccctcccctccttccctc
ccctccttccctcccctccttgcctcccctcctcccctctctctcccctc
cttccctcacctctccctccacccctccctcctcctcagGTCAAACCCTC
CACCCAGGAGTCCATTCGCGATGCCCACGCGCAGGACTTTACCTCCTTCC
CCCTCCACGGCTACCGACAGTACTCCTCCCCCCGCAACCCGTCCTACCTT
TCCAACCTGATAGAGCCGACAGCCGTGCTTCGCGTCGCCAACATTGCCTG
Ggtgagggggaagggagggaggaagggagggaggaacggatgtgctctgt
gtgtgtgtgaacgtgtgtctctccgcctctctgttatcaacccacttacc
tgactcctccctctgtccctccctcattccctcctcccctccatagGACA
CCTCTGAAAGCGAATTCCGGGGCTTACTCACACAGCAAGAGGGCGTCTCG
ACCGTGACACGCCTCCTCCCCTCATCCCACACCTCCCCTGCGCTCATCTC
TTTCCAGTCCGTGGAAGCCGCCGTACATGCCTGCATCCTCCTGCACAATC
AGGAGGTGAACGGCAAGCTCTTGTACGTCACATTTTCCGATGCAACCCCT
GGGATTTAGAGTAGGACCCTTTTCCTCCCTCCTTCCCTCCCTCGGAGATG
TAAGAGAATAACGAGTATTTATATTTGGAGAAGGCAGGAAGAAGAAAGAG
AAAGGAAAAGTAAGAGAAGCATAAGGACCAGAACAAAAAGAAGGAAGAAA
AGGAAGAAAAGGAGGGGGATGACGTACACATGAGGAGCGTGACGCCTATA
GGAGGGGAGAAATGGATTAAGCATATGAAAAGTCGAGCAAGTGATGCAGG
CAAGGGGTAGCAGCTGTAGCGTTTGCGGCAAAGCAGCAGCAGCAGCAACA
GCAGCAGCACTGGCGGCGCGAGTAGAAACAGTAGCAAAAACAGAAAGAAT
GGAAAGCTTTCTTTCGAATGTGAACGGTCGACGGTTCAAAATATGGAAGG
AAAGAAAACGACACAACAAGGACA
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protein sequence of NO03G00570.2

>NO03G00570.2-protein ID=NO03G00570.2-protein|Name=NO03G00570.2|organism=Nannochloropsis oceanica|type=polypeptide|length=697bp
MSHSPHNHANLPFRVRSMPPKRSTTSEAGRGHGRGRGRKAAATDNDADSF
PQDEEQGKDEEPGQEQQEQEVAQTFKSSSRRGRVAAAAATAAAAAKVEAD
VEEEEAHESAGRVSPRRSVSPEKKRRNARGEGGGEPAEAVATAAPATRKK
RGAPETATNGKGGGKEKEEGAPMEEEEQPQDQVPSQPASPQRKRSKKGGG
GGASAGAAAGAAAAPLPAYTTPLMTASEEAEAGAAAAAAAAAEAEAYHYH
QQHELLPKEEEGQPAAVEEQASEGMERDGGTGRRGMRGGGGRGGARGRGG
GRGRGRGGRTIPSARYDRLLGSVQSPLDLRPGTTEPSNVLLARIAEGLFP
ITLDALYTLFSFYGPVQKLVMFNKGAGNQALVQYPDVASAQAAYEQVDRR
NMYTDSNLIRVGFSTHQDIKVRANTDRTWDYTKKKDASAPATSTTSTDTA
AAGGATTSSSPSATASAAAAVVGPVDSGLKASLRERIISDMPNSWSTRLP
GTDTCVLVVQGLNMEMVGAEALAALFGLYGDVRRVKMMPEQESALVEMEK
PVQAYVAKWLLDASPLGGRIIKVKPSTQESIRDAHAQDFTSFPLHGYRQY
SSPRNPSYLSNLIEPTAVLRVANIAWDTSESEFRGLLTQQEGVSTVTRLL
PSSHTSPALISFQSVEAAVHACILLHNQEVNGKLLYVTFSDATPGI*
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protein sequence of NO03G00570.1

>NO03G00570.1-protein ID=NO03G00570.1-protein|Name=NO03G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=680bp
MPPKRSTTSEAGRGHGRGRGRKAAATDNDADSFPQDEEQGKDEEPGQEQQ
EQEVAQTFKSSSRRGRVAAAAATAAAAAKVEADVEEEEAHESAGRVSPRR
SVSPEKKRRNARGEGGGEPAEAVATAAPATRKKRGAPETATNGKGGGKEK
EEGAPMEEEEQPQDQVPSQPASPQRKRSKKGGGGGASAGAAAGAAAAPLP
AYTTPLMTASEEAEAGAAAAAAAAAEAEAYHYHQQHELLPKEEEGQPAAV
EEQASEGMERDGGTGRRGMRGGGGRGGARGRGGGRGRGRGGRTIPSARYD
RLLGSVQSPLDLRPGTTEPSNVLLARIAEGLFPITLDALYTLFSFYGPVQ
KLVMFNKGAGNQALVQYPDVASAQAAYEQVDRRNMYTDSNLIRVGFSTHQ
DIKVRANTDRTWDYTKKKDASAPATSTTSTDTAAAGGATTSSSPSATASA
AAAVVGPVDSGLKASLRERIISDMPNSWSTRLPGTDTCVLVVQGLNMEMV
GAEALAALFGLYGDVRRVKMMPEQESALVEMEKPVQAYVAKWLLDASPLG
GRIIKVKPSTQESIRDAHAQDFTSFPLHGYRQYSSPRNPSYLSNLIEPTA
VLRVANIAWDTSESEFRGLLTQQEGVSTVTRLLPSSHTSPALISFQSVEA
AVHACILLHNQEVNGKLLYVTFSDATPGI*
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Synonyms
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