NO03G00550, NO03G00550 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G00550 vs. NCBI_GenBank
Match: EWM29490.1 (Zinc finger, PHD-type, conserved site [Nannochloropsis gaditana]) HSP 1 Score: 206.8 bits (525), Expect = 3.600e-49 Identity = 222/501 (44.31%), Postives = 234/501 (46.71%), Query Frame = 0 Query: 511 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 1012 L QP + Q ALR MVKNIM LLQQRKP DP+KPLV RL EMAIRLEDYLWKRSST+ EYS+L TLKHRLQCLAVYMGKH QRS P G G + L G + SNIHLPNPH GG+ GGMGAG XXXXXXXXXXX AIHGHPPGP L G+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NV XXXX XXXXXXXXXXXX YLRHASKCIHVDGRCPQGYPNC GMKELWKHIASCREQRC+ PVCGPVRNTIRSSR+++ PMPQL QG Sbjct: 492 LGAQPLNPQDTALRPGMVKNIMVLLQQRKPAADPSKPLVETRLKEMAIRLEDYLWKRSSTLAEYSDLSTLKHRLQCLAVYMGKHQQRSQTVPAGAGGRGGGMPNQAPQPQGGGLSGNT------------------NQLQRLVPTANASNIHLPNPHPGGL--SGGMGAGG-XXXXXXXXXXXXXGLIMQPGSAIHGHPPGPQLRGSSLPHQGQVQPTSQQGSQQRRVGTGLAPAPGTQPAFLPQEQTQMQGRRVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGQAAPL----------------------------------------------------------NVMGGAQQVGXXXXANRGLPMPLSSGPGGTASASQKKRVQHTPEXXXXXXXXXXXXLLYLRHASKCIHVDGRCPQGYPNCIGMKELWKHIASCREQRCKXXXXXXXXXXXXXXXXXXXXXXPVCGPVRNTIRSSRSSAHPMPQLGQG 913
BLAST of NO03G00550 vs. NCBI_GenBank
Match: OEU17226.1 (DUF906-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 99.8 bits (247), Expect = 6.200e-17 Identity = 41/64 (64.06%), Postives = 46/64 (71.88%), Query Frame = 0 Query: 947 MKELWKHIASCREQRCQFPHCVSSRYVLSHYHKCKDTNCPVCGPVRNTIRSSRNASQPMPQLNQ 1011 MK LWKHIA C++Q+C PHCVSSRYVLSHYH+CKD CPVCGPVR I S + M L Q Sbjct: 1 MKRLWKHIAECKDQKCLVPHCVSSRYVLSHYHRCKDVRCPVCGPVREAIHRSHEKQKQMQALKQ 64
BLAST of NO03G00550 vs. NCBI_GenBank
Match: XP_001417549.1 (predicted protein [Ostreococcus lucimarinus CCE9901] >ABO95842.1 predicted protein [Ostreococcus lucimarinus CCE9901]) HSP 1 Score: 93.2 bits (230), Expect = 5.800e-15 Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 0 Query: 923 YLRHASKCIHVDGRCPQGYPNCKGMKELWKHIASCREQRCQFPHCVSSRYVLSHYHKCKDTNCPVCGPVRNTIRSSRNASQ 1004 +LRHASKC G CP P+C K+LW+H+ C +C +P C++SR +L H+ CKD CPVCGPVRN + R +Q Sbjct: 183 FLRHASKCQARHGHCPY-TPHCHVAKQLWEHVLKCTLTQCNYPRCLASRELLKHHQTCKDAGCPVCGPVRNAMLKQRQQAQ 262
BLAST of NO03G00550 vs. NCBI_GenBank
Match: XP_024390732.1 (histone acetyltransferase HAC1-like isoform X1 [Physcomitrella patens] >XP_024390733.1 histone acetyltransferase HAC1-like isoform X1 [Physcomitrella patens] >XP_024390734.1 histone acetyltransferase HAC1-like isoform X1 [Physcomitrella patens] >PNR43375.1 hypothetical protein PHYPA_015755 [Physcomitrella patens]) HSP 1 Score: 92.8 bits (229), Expect = 7.600e-15 Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0 Query: 923 YLRHASKCIHVDGRCPQGYPNCKGMKELWKHIASCREQRCQFPHCVSSRYVLSHYHKCKDTNCPVCGPVRNTIRSSRNASQPMPQLNQGG 1013 +LRHASKC +G+C Q P+C K+LW HIASC+++ C F C +SR +L H+ C+D CPVCGPVR + + + +QGG Sbjct: 770 FLRHASKCTASEGQC-QITPHCHMAKQLWIHIASCQDRECTFSRCNASRTLLHHHQHCRDARCPVCGPVRQQVMNQQRVQASSLAAHQGG 858
BLAST of NO03G00550 vs. NCBI_GenBank
Match: XP_024390735.1 (histone acetyltransferase HAC1-like isoform X2 [Physcomitrella patens]) HSP 1 Score: 92.8 bits (229), Expect = 7.600e-15 Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0 Query: 923 YLRHASKCIHVDGRCPQGYPNCKGMKELWKHIASCREQRCQFPHCVSSRYVLSHYHKCKDTNCPVCGPVRNTIRSSRNASQPMPQLNQGG 1013 +LRHASKC +G+C Q P+C K+LW HIASC+++ C F C +SR +L H+ C+D CPVCGPVR + + + +QGG Sbjct: 750 FLRHASKCTASEGQC-QITPHCHMAKQLWIHIASCQDRECTFSRCNASRTLLHHHQHCRDARCPVCGPVRQQVMNQQRVQASSLAAHQGG 838
BLAST of NO03G00550 vs. NCBI_GenBank
Match: EJK60217.1 (hypothetical protein THAOC_19472 [Thalassiosira oceanica]) HSP 1 Score: 92.0 bits (227), Expect = 1.300e-14 Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 0 Query: 924 LRHASKCIHVDGRCPQGYPNCKGMKELWKHIASCREQRCQFPHCVSSRYVLSHYHKCKDTNCPVCGPVRNTIRS 998 LRHASKC G C Q P+C MK+LWKHIASC++ C+ HC+SSRYVLSHY +CK C +C PV+ I++ Sbjct: 682 LRHASKCTAAPGTC-QVTPHCAEMKKLWKHIASCKDSYCKVRHCMSSRYVLSHYRRCKPP-CTICDPVKAIIKN 753
BLAST of NO03G00550 vs. NCBI_GenBank
Match: XP_022838808.1 (Zinc finger, PHD-finger [Ostreococcus tauri] >CEF97646.1 Zinc finger, PHD-finger [Ostreococcus tauri]) HSP 1 Score: 92.0 bits (227), Expect = 1.300e-14 Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 0 Query: 923 YLRHASKCIHVDGRCPQGYPNCKGMKELWKHIASCREQRCQFPHCVSSRYVLSHYHKCKDTNCPVCGPVRNTIRSSRNASQ 1004 +LRHASKC G CP P+C K+LW+H+ C +C +P C++SR +L H+ CKD CPVCGPVRN + R ++ Sbjct: 269 FLRHASKCQARHGECPY-TPHCHVAKQLWEHVLKCTLPQCNYPRCLASRELLKHHQTCKDARCPVCGPVRNAMLKQRQQAE 348
BLAST of NO03G00550 vs. NCBI_GenBank
Match: OUS49530.1 (histone acetylation protein-domain-containing protein [Ostreococcus tauri]) HSP 1 Score: 92.0 bits (227), Expect = 1.300e-14 Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 0 Query: 923 YLRHASKCIHVDGRCPQGYPNCKGMKELWKHIASCREQRCQFPHCVSSRYVLSHYHKCKDTNCPVCGPVRNTIRSSRNASQ 1004 +LRHASKC G CP P+C K+LW+H+ C +C +P C++SR +L H+ CKD CPVCGPVRN + R ++ Sbjct: 269 FLRHASKCQARHGECPY-TPHCHVAKQLWEHVLKCTLPQCNYPRCLASRELLKHHQTCKDARCPVCGPVRNAMLKQRQQAE 348
BLAST of NO03G00550 vs. NCBI_GenBank
Match: XP_007511391.1 (histone acetyltransferase [Bathycoccus prasinos] >CCO17512.1 histone acetyltransferase [Bathycoccus prasinos]) HSP 1 Score: 91.7 bits (226), Expect = 1.700e-14 Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 0 Query: 923 YLRHASKCIHVDGRCPQGYPNCKGMKELWKHIASCREQRCQFPHCVSSRYVLSHYHKCKDTNCPVCGPVRNTI 996 +LRHASKC +G+CP P+C K LW+H+ C CQ+P C++SR +L H+ CKD CPVCGPVR+ + Sbjct: 317 FLRHASKCQAAEGKCPY-TPHCHVAKHLWEHVLKCTLPTCQYPRCLASRELLKHHQNCKDPRCPVCGPVRSAM 388
BLAST of NO03G00550 vs. NCBI_GenBank
Match: XP_023764940.1 (histone acetyltransferase HAC1-like [Lactuca sativa]) HSP 1 Score: 88.6 bits (218), Expect = 1.400e-13 Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 0 Query: 923 YLRHASKCIHVDGRCPQGYPNCKGMKELWKHIASCRE-QRCQFPHCVSSRYVLSHYHKCKDTNCPVCGPV------RNTIRSSRNASQPMPQLNQGGVGGV 1017 +LRHA KC+H G+CP+ PNC ++LW H+ASC++ RC+FP C ++++L H+ C+D CPVC PV + IR+ N++ +P + G+ Sbjct: 545 FLRHARKCVHPPGKCPE--PNCITAQKLWNHMASCKDLVRCRFPRCRVTKHLLHHHWNCRDPTCPVCVPVKRFVQLKTGIRTDSNSNSGLPPDHHSDHAGI 643 The following BLAST results are available for this feature:
BLAST of NO03G00550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G00550 ID=NO03G00550|Name=NO03G00550|organism=Nannochloropsis oceanica|type=gene|length=4247bpback to top protein sequence of NO03G00550.1 >NO03G00550.1-protein ID=NO03G00550.1-protein|Name=NO03G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1186bpback to top Synonyms
Publications
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