NO03G00420, NO03G00420 (gene) Nannochloropsis oceanica

Overview
NameNO03G00420
Unique NameNO03G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1493
Alignment locationchr3:134163..135655 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:134163..135655 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO03G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR050ngnoR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005869NSK005869Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00420.1NO03G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00420.1NO03G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00420 ID=NO03G00420|Name=NO03G00420|organism=Nannochloropsis oceanica|type=gene|length=1493bp
AACGATTCCCAAATGCTACCCAGCAGCTCTTCCGCACGCCCTTTTGCCAT
GCGAAACCCACGCGAGCAGGCCTTGACCGCTGCTACGTACAGTTACTTGT
GTAATATGCTTGAGTATACTGGTAAAAAGGACGCGGATGGGGCCTTGTTA
AATTCAACGAGGGCAGCAATGGCAGCAATAGCGTCATGACCAGATCGGCT
GATCGATCTCGTATCTAATCATATTTTGCACGTTCCAAGCATCTGCTCCG
CCTTAACTCTCGATATCTCTCTCTCTCATCCCGCCCTCAAGGGCAGTGAA
CCATGAGCTCCTCTAACGCCGATGGGCTGACGCAGCGCAAGGGGAAGAAG
GGTGGCAACAACAGCTCTGAAAAGGCCCCCTCGCTCGATAAGGAGGACAA
GCCCAAGCCTTTCAAGCAGTCCTCTTCCTACCTGAACCTGGACCCCGTGT
CGGAAAAGAACCTGgtaaggagataatgatgtgttgggatgcgatgggga
ggagggatgggagaaaggaggtggtagggtaggtgggttactagatttcc
ggggagtcaggatggaggaggtcagatatgtgaatgtggagacgaatgga
tgtacacggcctatgtacgaggcaccagcatggacaatgtgggttatgca
tgtctttgccagcatattgtaaggagtacctttcactgtccacctgctca
ccattgtctcctcccttccctcccctccctcccctccctcctcctctatc
ccagGCTACCGTCATGCACTTTCTCCTCCCCTGTATGCTTGCCGTGTACC
TGGGCATTATCCTCCAAGGATACTCCGTCAAGGAGTTTAACGGCCTGATT
ACGAACCGATACTTTTTGCTCGgtaaggatgcagggaagaagggatggga
cggcgggaagggagggaaggagggacgggagggcggcggcgtcatgtgtc
tcccttctacacgcttacctcagccatagccaagaaacaatagcctcact
acgaccccccacaatcctacctccctccctccccccccagGGTTTGCCAA
CGTGGAGGTCCTCAAAAGGGCCTTGGTCGCCAATGTCCGTGATAGTGCCA
TCTGGGCCATTACATACCTCTATGTCCGACGGTTCTGCAACCCCGAATTC
CGCCCTAAAATGGCGTCTTTCGTCCAAGACGGATACTTCGGTGCCTTGGC
Ggtacgtccttcctctctcccatttccctccctccctccccttttgggga
ttttcctttcgtccctccctcttattggtggggatcatgatcatatgccg
gtgattgaatcaactcaccttgtctccctccttccctccgtccttctctc
cctccttcagTCCTTCGCCACGACACTGATCAAGCAGGTCATCAACAACT
TCAACTAGATGAGGAGGCGGGAAGGGAAGGGAGCAAGAGAGGGAGGGAGG
ATTATTTACAGTAGCGAGGAGACAGAGCGGAGAGTTTGAGGGC
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protein sequence of NO03G00420.1

>NO03G00420.1-protein ID=NO03G00420.1-protein|Name=NO03G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MSSSNADGLTQRKGKKGGNNSSEKAPSLDKEDKPKPFKQSSSYLNLDPVS
EKNLATVMHFLLPCMLAVYLGIILQGYSVKEFNGLITNRYFLLGFANVEV
LKRALVANVRDSAIWAITYLYVRRFCNPEFRPKMASFVQDGYFGALASFA
TTLIKQVINNFN*
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Synonyms
Publications