NO03G00390, NO03G00390 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G00390 vs. NCBI_GenBank
Match: EWM27449.1 (hypothetical protein Naga_100107g10 [Nannochloropsis gaditana]) HSP 1 Score: 276.6 bits (706), Expect = 1.700e-70 Identity = 134/264 (50.76%), Postives = 182/264 (68.94%), Query Frame = 0
Query: 294 PPSKGVIRKPIVAQPPLHRPRDEVEVEKILVFLSSSDRGQRVRHLWGHGDKMETIEVTLASLASWCERGFDVTLWFLAAWKVSEEDERIKKALQCERIGTSLEVRYWDDYPLNVDGYLSSKHRLALAEAKDDFDFFISIEDDMHLRPVMLDAFLQDSGRLAKA-EKPYLNRFFPGFVRIEHDPLA-DQQWAIWETDAADYEGIFLGGNAGWWGLVGGNRHQGMWMATREQVYHLEERCNSRFFGI-REKTADWVEVSLKRRREG 555
P IR PI +PPLHRP E ++KI++ +SS DRGQR+ HLW GDK++TI+ TL S+ +CERGFD+T+WF+AAWK+S+ ++ I++AL C+RI + +RYWD + ++ LSS+HRLA+AE D++DFFISIEDD++L P+M+DA++ S RLA A + F GF R EHD L+ D+ WA+WET A +Y + + G AGWW V GNRHQGMWMATREQ+Y+ E RC+ F + A WVEV RR G
Sbjct: 199 PAGDKAIRHPISGRPPLHRPASETHIQKIMLTISSFDRGQRISHLWA-GDKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSPDIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYVHASSRLALATDADAREHFMVGFSRKEHDLLSEDRAWALWETLAEEYSALEIPG-AGWWAQVKGNRHQGMWMATREQIYNFESRCDGGFLNLTNPNEAGWVEV----RRHG 456
BLAST of NO03G00390 vs. NCBI_GenBank
Match: EWM29504.1 (hypothetical protein Naga_100601g2 [Nannochloropsis gaditana]) HSP 1 Score: 270.0 bits (689), Expect = 1.600e-68 Identity = 131/255 (51.37%), Postives = 175/255 (68.63%), Query Frame = 0
Query: 294 PPSKGVIRKPIVAQPPLHRPRDEVEVEKILVFLSSSDRGQRVRHLWGHGDKMETIEVTLASLASWCERGFDVTLWFLAAWKVSEEDERIKKALQCERIGTSLEVRYWDDYPLNVDGYLSSKHRLALAEAKDDFDFFISIEDDMHLRPVMLDAFLQDSGRLAKAEKPYL-NRFFPGFVRIEHDPL-ADQQWAIWETDAADYEGIFLGGNAGWWGLVGGNRHQGMWMATREQVYHLEERCNSRFFGIRE-KTADWVE 546
P + R PI +PPLHRP E V+KI++ +SS DRG+R+ LW GDK+ TI TL S+ CERGFD+T+WF+AAWK+S++ E I++AL C+R +++RYWD +P +V G+LSS+HRLA+A+ D++DFFISIEDD++L P M+DA++ SGRLA Y GF R EHD L D+ WA+WET A DY + L G AGWW V GN HQ MWMATREQ+Y+ E RC S F ++ + A+WVE
Sbjct: 195 PAGEKATRPPISGRPPLHRPASETHVQKIILTISSIDRGERISDLWA-GDKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHASGRLALTTDAYAREHHMVGFSRKEHDLLREDRAWALWETLAVDYHVLQLPG-AGWWAQVTGNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVE 447
BLAST of NO03G00390 vs. NCBI_GenBank
Match: XP_005855277.1 (hypothetical protein NGA_0073800, partial [Nannochloropsis gaditana CCMP526] >EKU21078.1 hypothetical protein NGA_0073800, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 237.7 bits (605), Expect = 8.900e-59 Identity = 114/219 (52.05%), Postives = 153/219 (69.86%), Query Frame = 0
Query: 331 RGQRVRHLWGHGDKMETIEVTLASLASWCERGFDVTLWFLAAWKVSEEDERIKKALQCERIGTSLEVRYWDDYPLNVDGYLSSKHRLALAEAKDDFDFFISIEDDMHLRPVMLDAFLQDSGRLAKAEKPYL-NRFFPGFVRIEHDPL-ADQQWAIWETDAADYEGIFLGGNAGWWGLVGGNRHQGMWMATREQVYHLEERCNSRFFGIRE-KTADWVEV 547
RG+R+ LW GDK+ TI TL S+ CERGFD+T+WF+AAWK+S++ E I++AL C+R +++RYWD +P +V G+LSS+HRLA+A+ D++DFFISIEDD++L P M+DA++ SGRLA Y GF R EHD L D+ WA+WET A DY + L G AGWW V GN HQ MWMATREQ+Y+ E RC S F ++ + A+WVE+
Sbjct: 1 RGERISDLWA-GDKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHASGRLALTTDAYAREHHMVGFSRKEHDLLREDRAWALWETLAVDYHVLQLPG-AGWWAQVTGNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVEI 217
BLAST of NO03G00390 vs. NCBI_GenBank
Match: CBJ28240.1 (hypothetical protein Esi_0097_0005 [Ectocarpus siliculosus]) HSP 1 Score: 108.6 bits (270), Expect = 6.300e-20 Identity = 76/244 (31.15%), Postives = 120/244 (49.18%), Query Frame = 0
Query: 321 KILVFLSSSDRGQRVRHLWGHGDKMETIEVTLASLASWCERGFDVTLWFLAAWKVSEEDERIKKALQCERIGT----SLEVRYWDDYPLNVDGYLSSKHRLALAEAKDDFDFFISIEDDMHLRPVMLDAFLQDS----GRLAKAEKPYLNRFFPGFVRIEH---------DPLADQQWAIWETDAA-------DYEGIFLGGNAGWWGLVGGNRHQGMWMATREQVYHLEERCNSRFFGIREKT 541
+IL ++S DRG+R+ + DK++ I + + + CE GF T+ +AAW++S + ++ L C R G SLEV +P ++ LS KHR+ + ++FD FI +EDD+ + + F ++S GR P N PGF+R+EH P + ++W WE + + GIFL GGN +QGMWMATREQ+ L E+ + + E +
Sbjct: 395 RILFVMTSFDRGRRLGPSF-KKDKLDFILLMMDEIREACEAGFSPTVHLIAAWELSGVEVFVRDRLFCRRTGAHVPYSLEV-----HPSSIGNDLSIKHRIFMKPRLEEFDLFIQVEDDVIVTLNHMLLFREESELLDGRRHSDGAPLANTAVPGFIRVEHAAEEEGTIAGPSSGEEWQEWEVMLSRLRPVKLEEAGIFLTLGPSLPVPRGGN-NQGMWMATREQLRKLSEKKSCDYLNFDESS 631 The following BLAST results are available for this feature:
BLAST of NO03G00390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G00390 ID=NO03G00390|Name=NO03G00390|organism=Nannochloropsis oceanica|type=gene|length=3009bpback to top protein sequence of NO03G00390.2 >NO03G00390.2-protein ID=NO03G00390.2-protein|Name=NO03G00390.2|organism=Nannochloropsis oceanica|type=polypeptide|length=556bpback to top protein sequence of NO03G00390.1 >NO03G00390.1-protein ID=NO03G00390.1-protein|Name=NO03G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=624bpback to top Synonyms
Publications
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