NO03G00290, NO03G00290 (gene) Nannochloropsis oceanica

Overview
NameNO03G00290
Unique NameNO03G00290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1386
Alignment locationchr3:88364..89749 +

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Properties
Property NameValue
Description60S ribosomal protein L36
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:88364..89749 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR000509Ribosomal_L36e
Homology
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: XP_005853418.1 (large subunit ribosomal protein L36e [Nannochloropsis gaditana CCMP526] >EKU22942.1 large subunit ribosomal protein L36e [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 194.5 bits (493), Expect = 2.300e-46
Identity = 98/106 (92.45%), Postives = 104/106 (98.11%), Query Frame = 0 
Query:   44 MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQAAH 150
            MSSTGTIRG+NKG+PV+KLEVPKRPA RKGTLVKKVKLVREV+RDVVGLMPYEKRILDVIK+GGSGAEKKVYKFAKRRLGTHRRALKKREEIK+YY KLRARQAAH
Sbjct:    1 MSSTGTIRGINKGYPVQKLEVPKRPAGRKGTLVKKVKLVREVVRDVVGLMPYEKRILDVIKTGGSGAEKKVYKFAKRRLGTHRRALKKREEIKEYYSKLRARQAAH 106
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: XP_005854726.1 (large subunit ribosomal protein L36e, partial [Nannochloropsis gaditana CCMP526] >EKU21639.1 large subunit ribosomal protein L36e, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 171.8 bits (434), Expect = 1.600e-39
Identity = 87/94 (92.55%), Postives = 92/94 (97.87%), Query Frame = 0 
Query:   56 GFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQAAH 150
            G+PV+KLEVPKRPA RKGTLVKKVKLVREV+RDVVGLMPYEKRILDVIK+GGSGAEKKVYKFAKRRLGTHRRALKKREEIK+YY KLRARQAAH
Sbjct:    1 GYPVQKLEVPKRPAGRKGTLVKKVKLVREVVRDVVGLMPYEKRILDVIKTGGSGAEKKVYKFAKRRLGTHRRALKKREEIKEYYSKLRARQAAH 94
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: GAX95022.1 (50S ribosomal protein L36e [Pythium insidiosum] >GAX95027.1 50S ribosomal protein L36e [Pythium insidiosum])

HSP 1 Score: 154.8 bits (390), Expect = 2.100e-34
Identity = 78/104 (75.00%), Postives = 90/104 (86.54%), Query Frame = 0 
Query:   44 MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQA 148
            MSSTG   GLNKGFPV K EVP RPA+RKG L KK KLVR ++R+VVGLMPYEKRILD+IKSGGS AEK++YKF+K+RLGTHRRAL+KREE+K YY  LRA+QA
Sbjct:    1 MSSTGIAVGLNKGFPVTKKEVPARPASRKGRLGKKTKLVRSIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGTHRRALQKREEMKAYYAALRAKQA 104
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: XP_008915971.1 (hypothetical protein PPTG_19308 [Phytophthora parasitica INRA-310] >XP_009533767.1 hypothetical protein PHYSODRAFT_355317 [Phytophthora sojae] >EGZ11022.1 hypothetical protein PHYSODRAFT_355317 [Phytophthora sojae] >ETI54540.1 hypothetical protein F443_02673 [Phytophthora parasitica P1569] >ETK94393.1 hypothetical protein L915_02555 [Phytophthora parasitica] >ETL47759.1 hypothetical protein L916_02528 [Phytophthora parasitica] >ETM00883.1 hypothetical protein L917_02461 [Phytophthora parasitica] >ETM54058.1 hypothetical protein L914_02549 [Phytophthora parasitica] >ETM98737.1 hypothetical protein PPTG_19308 [Phytophthora parasitica INRA-310] >ETO83292.1 hypothetical protein F444_02674 [Phytophthora parasitica P1976] >ETP24371.1 hypothetical protein F441_02635 [Phytophthora parasitica CJ01A1] >ETP52345.1 hypothetical protein F442_02646 [Phytophthora parasitica P10297] >KUF97995.1 WD repeat-containing protein 16 [Phytophthora nicotianae] >KUG02165.1 60S ribosomal protein L36 [Phytophthora nicotianae] >POM80106.1 60s ribosomal protein l36 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 151.0 bits (380), Expect = 3.000e-33
Identity = 76/106 (71.70%), Postives = 89/106 (83.96%), Query Frame = 0 
Query:   44 MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQAAH 150
            MSSTG   GLNKGFPV K +V  RPA+RKG   KK KLVRE++R+VVGLMPYEKRILD+IKSGGS AEK++YKF+K+RLGTHRRAL+KREE+K YY  LRA+ A H
Sbjct:    1 MSSTGIAVGLNKGFPVNKKQVAPRPASRKGRAGKKTKLVREIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGTHRRALQKREEMKAYYAALRAKAAHH 106
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: XP_024583589.1 (60s ribosomal protein [Plasmopara halstedii] >CEG47220.1 60s ribosomal protein [Plasmopara halstedii])

HSP 1 Score: 149.8 bits (377), Expect = 6.600e-33
Identity = 75/106 (70.75%), Postives = 89/106 (83.96%), Query Frame = 0 
Query:   44 MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQAAH 150
            MSSTG   GLNKGFPV K +V  RPA+RKG   KK KLVR+++R+VVGLMPYEKRILD+IKSGGS AEK++YKF+K+RLGTHRRAL+KREE+K YY  LRA+ A H
Sbjct:   53 MSSTGIAVGLNKGFPVNKKQVAPRPASRKGRAGKKTKLVRDIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGTHRRALQKREEMKAYYAALRAKAAHH 158
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: XP_002902787.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55957.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 148.7 bits (374), Expect = 1.500e-32
Identity = 75/106 (70.75%), Postives = 88/106 (83.02%), Query Frame = 0 
Query:   44 MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQAAH 150
            MSSTG   GL KGFPV K +V  RPA+RKG   KK KLVRE++R+VVGLMPYEKRILD+IKSGGS AEK++YKF+K+RLGTHRRAL+KREE+K YY  LRA+ A H
Sbjct:    1 MSSTGIAVGLTKGFPVNKKQVAPRPASRKGRAGKKTKLVREIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGTHRRALQKREEMKAYYAALRAKAAHH 106
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: CCI48891.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 141.4 bits (355), Expect = 2.400e-30
Identity = 69/103 (66.99%), Postives = 86/103 (83.50%), Query Frame = 0 
Query:   44 MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQ 147
            M+STG   G NKG+PV K +VP RP ++KG   KK KLVR+++R+VVGLMPYEKRILD+IKSGGS AEK++YKF+K+RLGTHRRAL+KREE+K YY   RA+Q
Sbjct:    1 MTSTGIAVGKNKGYPVTKRQVPARPVSKKGRCGKKTKLVRQIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGTHRRALQKREEMKAYYAAQRAKQ 103
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: OQS06123.1 (hypothetical protein THRCLA_20439 [Thraustotheca clavata])

HSP 1 Score: 141.4 bits (355), Expect = 2.400e-30
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = 0 
Query:   44 MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQA 148
            MSSTG   G++KG+PV K EV  RPAA+KG   KK + VR ++R+VVGLMPYEKRILD+IKSGGS AEK++YKF K+RLGTHRRAL KREE+K YY  LRA+QA
Sbjct:    1 MSSTGIACGVSKGYPVTKREVAPRPAAKKGRAGKKTQFVRSIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFTKKRLGTHRRALHKREEMKAYYAALRAKQA 104
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: CCA24335.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 140.6 bits (353), Expect = 4.000e-30
Identity = 68/103 (66.02%), Postives = 87/103 (84.47%), Query Frame = 0 
Query:   44 MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQ 147
            M+STG   G +KG+PV K ++P RPA++KG   KK KLVR+++R+VVGLMPYEKRILD+IKSGGS AEK++YKF+K+RLGTHRRAL+KREE+K YY   RA+Q
Sbjct:    1 MTSTGIAVGKHKGYPVTKRQIPARPASKKGRCGKKTKLVRQIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGTHRRALQKREEMKAYYAAQRAKQ 103
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: XP_008615134.1 (50S ribosomal protein L36e [Saprolegnia diclina VS20] >XP_012196068.1 50S ribosomal protein L36e [Saprolegnia parasitica CBS 223.65] >EQC31293.1 50S ribosomal protein L36e [Saprolegnia diclina VS20] >KDO33318.1 50S ribosomal protein L36e [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 139.0 bits (349), Expect = 1.200e-29
Identity = 70/104 (67.31%), Postives = 84/104 (80.77%), Query Frame = 0 
Query:   44 MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQA 148
            MSSTG   G+ KG+PV K EV  RPAA+KG   KK + VR ++R+VVGLMPYEKRILD+IKSGGS AEK++YKF K+RLGTHRRAL KREE+K YY  +RA+QA
Sbjct:    1 MSSTGIACGVAKGYPVTKREVAPRPAAKKGRAGKKTQFVRNIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFTKKRLGTHRRALHKREEMKAYYAAVRAKQA 104
The following BLAST results are available for this feature:
BLAST of NO03G00290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853418.12.300e-4692.45large subunit ribosomal protein L36e [Nannochlorop... [more]
XP_005854726.11.600e-3992.55large subunit ribosomal protein L36e, partial [Nan... [more]
GAX95022.12.100e-3475.0050S ribosomal protein L36e [Pythium insidiosum] >G... [more]
XP_008915971.13.000e-3371.70hypothetical protein PPTG_19308 [Phytophthora para... [more]
XP_024583589.16.600e-3370.7560s ribosomal protein [Plasmopara halstedii] >CEG4... [more]
XP_002902787.11.500e-3270.75conserved hypothetical protein [Phytophthora infes... [more]
CCI48891.12.400e-3066.99unnamed protein product [Albugo candida][more]
OQS06123.12.400e-3068.27hypothetical protein THRCLA_20439 [Thraustotheca c... [more]
CCA24335.14.000e-3066.02conserved hypothetical protein [Albugo laibachii N... [more]
XP_008615134.11.200e-2967.3150S ribosomal protein L36e [Saprolegnia diclina VS... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR084ncniR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR050ngnoR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005856NSK005856Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00290.1NO03G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611950gene_10319Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00290.1NO03G00290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00290 ID=NO03G00290|Name=NO03G00290|organism=Nannochloropsis oceanica|type=gene|length=1386bp
CGACGCGCAACGAATAAGGACATAAAGGGAAGAATGACCCGAGAGAGGCC
CAAGGCGTCGACCCGGCGGCCACCAGCAGCCATCCCCTTCTCTCGTCCTC
CTTCCATCACACATGCCCTTCTTTCCGTGCATGCACGGATGTTGAGGGCT
ATGACCACCACGCAGCTTGCCAAAGAGATGCAGGCACATTAAGTGTGCGG
TGCCGTGTCGATGGAAGGGACAGATGGATGGCGGCTATGCCCCGAATGGC
CTCCCCTGTCTCCCTCGCCCTCCTTCCACCACCGCTCGCCCACACACGAC
ACATTCTCATCACCCTTTCTCCTCCCCCACATCCACAACTCCACATACAG
ACAGCCATGTCTAGCACCGGTACCATCCGTGGCCTGAACAAGGGGTTCCC
GGTCGAGAAGCTCGAGGTGCCCAAGCGGCCAGCGGCCCGCAAGGGGgtaa
gtcttgatgagaaagagagaaaggagggaggcgtggaggagtgtaagtgc
atgcagggcactgcgatctccagcatcatcgtgtctgagtctggcacatg
acagagaaggggatagagcggtagaaacaggctgtgtagtgtttctctaa
gagccccagcgcttattatgtcagcctatcaagcactcatctatctgccc
ttttctgcctcgcccctcctttcctgttattcccgcagACCCTGGTCAAG
AAGGTCAAGCTCGTCCGTGAGGTTATTCGGGACGTAGTGGGCCTCATGCC
CTACGAGAAGCGCATCCTTGATGTCATCAAAAGCGGTGGCTCTGGTGCTG
AGAAGAAGgtacgtgtagggtcagtggggtatgtgacgatcacggtaaaa
gggcttacttgctcctccttcgacagctaccatgacatgcggacattgtt
ccctttttcgcaggcactctcgcatttcccccttcttccggccgtacccc
gtataaaaccccctctcagcccctcacatcctcccctcccttcttcccac
ccgtccccctcgtcttctccagGTGTATAAGTTCGCCAAGCGGCGGTTGG
GTACCCACCGTCGCGCCCTGAAGAAGCGTGAGGAAATCAAGGACTACTAC
GGCAAGCTCCGTGCCCGTCAGGCGGCCCACTAAATTTACAGCTTGCACTA
GGCATACCTACATGGACACCCGCTTGGTAGATAGAGGATGGAGAGAAGGT
CCTTTTTTACGTCTCTCCCCGGCATTTTGGTGCCATGAGAAGTGGAGGAA
GGGGGAGAGGGGGTGGGTGGGAGGTGTGTAGGTAAGCGGGGCCGTGAGCC
TGTTGATGGCGATGAGGGCAAGGAGGAAAGAAATATCAACATGGACCAAG
CCTCGTGATACCTGACGAAGAGGCTCTTGGGATTGA
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protein sequence of NO03G00290.1

>NO03G00290.1-protein ID=NO03G00290.1-protein|Name=NO03G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MAAMPRMASPVSLALLPPPLAHTRHILITLSPPPHPQLHIQTAMSSTGTI
RGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRIL
DVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQAAH*
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Synonyms
Publications