NO03G00270, NO03G00270 (gene) Nannochloropsis oceanica

Overview
NameNO03G00270
Unique NameNO03G00270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3849
Alignment locationchr3:80263..84111 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:80263..84111 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO03G00270 vs. NCBI_GenBank
Match: EWM29614.1 (hypothetical protein Naga_100006g7 [Nannochloropsis gaditana])

HSP 1 Score: 242.3 bits (617), Expect = 4.400e-60
Identity = 223/619 (36.03%), Postives = 278/619 (44.91%), Query Frame = 0 
Query:   55 MTASEELSLRYYEVCCLLLQRWKYSNQNNREDMNEASARSGASYDELRSILKHLRAKYMLGFNNAQKQGRYVGDFFGYYTSTKRPRGRPPT-AGGEGGVARAAASVPRVQQQQ---SARFVTGAGDLAHELEGSESGSARSSPAGAVERRGGCMPSAPRLPSSRPRKAVAPYEPPVASTHSRSSSTSSVITAAGRGRKGAGSKAQPVVKRSRGXXXXXXXXFSTAGRQQDMQVWEGQEAGSFRYESSHQESWYGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLFHLVEAAEKASGKKKCHKKGAGLVGKTAAVAVARAVSPVEDDLGMLLLGLKARPAPFLRRESSLSLAPA---------------AAVVEPIEAHVSAGSS-SNSVNELSPSSNPLQSSLDATTLDGGASMCSLSTHTSSSGSNNNGSFYTGHPHGAPPGHQSMPSRLSYPPMAYHAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHNTSTQADLLHASYPSTVGNFPVPAMPGPAGGAVAG-AEIPALAAG-------AIGAKEQKQQQH----AGSDRAAADLFVNMM 642
            MTASEELSLRYYEVCC+LLQRW+YS QNNREDMN+A   SGASYDELRSILKHLRAKYM GFNNAQKQGR++ DF+GYYTSTKRPRGRPPT AGG G   +  +S  R QQ     S+  VTGAGDL  E + S+S +  ++P G   R         R+PS+R RKA APYE P+AS                           P+ KR R             G   D      ++AG  R ++  +    G                                        SLF LV A E+ASGK   +            VA +RA+SP  DD G+LLLGLKA P  F   ++S S                   A   E    + S GSS   S+ ++ PSS+ LQS+L    L+G     S S HT  +      S Y GHP   PP   +MP RL YPP+ +  H                                                             Q N+S+QADLLHASY ST+    +PAM G A   V G A+ P   +G        +G+   + Q+H     G+DR A  +  +M+
Sbjct:    1 MTASEELSLRYYEVCCMLLQRWRYSTQNNREDMNDACIESGASYDELRSILKHLRAKYMAGFNNAQKQGRFIDDFYGYYTSTKRPRGRPPTAAGGTGNGVKLPSSNIRAQQPSQPASSDMVTGAGDLMVESD-SQSSNDGNAPVGGTGRL--------RMPSARARKATAPYEAPLAS-XXXXXXXXXXXXXXXXXXXXXXXXXXPLAKRYRHGSSEMVGYVGPEGNDYDNLQAYQEKAG--RNQAEFERIDVGGS-----TRCRMEGKAGEELEDEDAVVVMLAPTGQHERQSSLFDLVTAVEEASGKTDGN-----------PVAKSRAISPALDDHGLLLLGLKAHPVTFSHAKTSPSTTAGTNSAKSLLETQSKQEATPSERTSCNNSVGSSGETSLTKVPPSSSSLQSALGGKALEG---RVSASFHTQPA---KTSSIYPGHP--LPPQLANMPPRLPYPPVTFQGH------ASHPQYYHPHHYFHNLSTPYNQQPQQSVAYYNQYPPQKHERKTSEEQPAYCPQPHQQNSSSQADLLHASYSSTMSTHSLPAMSGHAVVDVVGPADTPTALSGTKIGTCKTVGSNRGQGQEHHSRREGTDRTAQHIVGSMV 577
[Close]
BLAST of NO03G00270 vs. NCBI_GenBank
Match: EWM29566.1 (hypothetical protein Naga_100006g9 [Nannochloropsis gaditana])

HSP 1 Score: 103.2 bits (256), Expect = 3.200e-18
Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = 0 
Query:   55 MTASEELSLRYYEVCCLLLQRWKYSNQNNREDMNEASARSGASYDELRSILKHLRAKYMLGFNNAQKQGRYVGDFFGYYTSTKRPRGR 143
            MT SEE+SL YY +CC LL RW +   NNR D++EA ++SGASY+ELRSILK+LRA Y+ GF  A+K G+   D F YY S K+ R R
Sbjct:   30 MTTSEEISLEYYRICCALLHRWYFVAHNNRNDISEACSKSGASYEELRSILKYLRAHYVGGFLTARKLGQVSDDLFAYYLSLKQQRRR 117
The following BLAST results are available for this feature:
BLAST of NO03G00270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29614.14.400e-6036.03hypothetical protein Naga_100006g7 [Nannochloropsi... [more]
EWM29566.13.200e-1856.82hypothetical protein Naga_100006g9 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR084ncniR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR050ngnoR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00270.1NO03G00270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00270.1NO03G00270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00270 ID=NO03G00270|Name=NO03G00270|organism=Nannochloropsis oceanica|type=gene|length=3849bp
CATCCTTCGCCGCTTTCAGCACCCACAACAAGCAGACGCACTTCAGCCTG
CTCGTGCGCAGCGCTGTGTGCCTTGGTTGCTAATTGCACAACACGGCCCC
ATGAACCATTTTCCTGCAATATTTGGCATGTATTTGGCCGTAATAGTCCC
GCGGTTTCTGGAACTTTATCTCCCACCCAACACCCACGATCGAGGCTGCC
CATTTCCCTTCAAGCCATTCAACATAACGATAGGCGCTTCATGCGTCCAT
CCACTGGGCACTATCCTACCCAGAGTAAGCATACAACAAAACTCTGGCGT
TCACTTTTAACCTTCACATCCATATTTATCCGGGGATTCGGCCGTAAATG
TCCCCCGCGGCAACGCTCTTTGTGCACCCACGGTGTGCGAGCGGATCGAG
AGAGGTGTCAGGGACGAGACAGCAACACACGAAGCACCACCAAAGACGCT
AGGCTTCTACACAGGCGACACTGCAAGGACACAAATTACCATACGAACAG
GATACCTTTGTCTTTCCCCATGGATCCAGCAGCGCGCCAGGCAGACAAGC
CCCTCCTCGGCATTGTGGGCACAGCATCAGCTCGGCCTGGCGTCCTTGCC
CTGTTGTGTACAACCCCGCTGGTGGCACGACACACACGAGACACTTATCA
GCATAATACAATCCATTTTTTATAGTCATGCGGGTGTCTTGTCTTATCTA
GTGGGGGGACGGAGACGTCTTTGCTGTCTGGCCCATGAAGTGAAGCGGCC
CATATACCTCGTGTAGGTGTGGACGTGCAACTCCACGCCACGCGCACGTG
TAGCTCTGCTCTCTGCGGATCTCTGGGATGCGATTGACGCACGACCTTTC
TTCTCCTTTCTCCGGTCTGACCCCCCTTCCCCTCTCACCCACGAACACCC
GCACAGGCAGTCAGAGAGACCAGGCGTCGTCATCGTCACCCTACCTCCTT
TTTTTATTTTATTTTTTAAAATCAAATTTTGCTTCAAATATGACGGCTTC
GGAAGAACTCTCCCTCCGGTATTACGAGGTGTGCTGCCTGCTGTTGCAGC
GCTGGAAGTACTCCAACCAGAACAACCGCGAGGACATGAACGAAGCCAGC
GCACGGTCCGGTGCCTCTTACGACGAGCTCCGCTCCATCCTGAAGCATCT
CCGCGCCAAGTACATGTTGGGTTTCAATAATGCCCAGAAGCAAGGCCGAT
ATGTGGGAGACTTTTTCGGTTACTACACCTCTACCAAGCGTCCTCGTGGG
AGGCCTCCTACTGCTGGTGGGGAGGGAGGGGTGGCCCGGGCTGCCGCGAG
CGTCCCGCGTGTTCAGCAACAGCAGTCTGCCCGCTTTGTTACGGGGGCGG
GTGATCTCGCGCATGAATTGGAGGGGAGTGAGAGCGGCAGCGCTAGGAGC
TCCCCGGCAGGGGCGGTGGAGAGGCGTGGTGGGTGTATGCCCTCTGCACC
GCGTCTGCCATCCTCCCGGCCCCGCAAGGCCGTCGCACCGTACGAGCCAC
CCGTTGCAAGTACCCACAGTCGCTCGTCGTCAACCTCCTCCGTGATAACG
GCTGCAGGCCGGGGTCGTAAGGGAGCGGGAAGCAAGGCTCAGCCGGTGGT
CAAACGCTCCCGAGGTGGTGTTGCTGCTGCAGCTGCTGCTTTCTCGACTG
CAGGACGGCAGCAGGATATGCAGGTGTGGGAGGGACAAGAAGCAGGAAGC
TTCAGATACGAGAGTAGCCACCAGGAGTCGTGGTATGGGAACGGGGGGAA
GGAGGGGGAGGACACGGACGAGGAGTATGACGAGGATGCGGTGGTGGTGA
TGATGATGGATGACAGCAGCAGCAGCAGCAAGCAAAGAGAGGGCTCGGGG
GCTGCGGACTCTCTTTTTCACTTGGTTGAGGCCGCGGAGAAAGCGTCAGG
GAAGAAGAAGTGCCACAAGAAGGGTGCTGGCCTAGTTGGAAAAACAGCAG
CAGTAGCCGTGGCGCGAGCGGTCAGTCCTGTCGAAGACGACCTCGGCATG
TTACTTCTAGGGCTCAAGGCCCGCCCGGCACCCTTCTTGCGACGGGAATC
CTCTCTCTCCCTCGCACCGGCAGCGGCAGTGGTGGAACCGATAGAAGCCC
ACGTCAGCGCTGGCAGCAGCAGCAACAGTGTGAATGAGCTCTCCCCAAGC
AGCAACCCCCTCCAATCCTCCCTCGATGCCACCACCTTGGATGGGGGTGC
CTCTATGTGCTCCCTCTCCACGCACACCAGCAGCAGCGGCAGCAACAACA
ACGGCAGTTTCTACACAGGTCATCCCCACGGAGCTCCTCCCGGCCACCAG
TCCATGCCCTCTCGCTTATCATACCCGCCCATGGCCTATCACGCCCACGC
TCCTCCTCCCCCTCCTCCTCACCACCCTCACTACTACCATCCGCAGCACT
ACTACCCCCATCTTTACAACCAACAGCAGCAACAGCAGCAACTTCAATCA
CAGCACCCCTACCACGTGCATCACCACCATCAGCAGCAGCAACAATTATA
CCAGCAGCAGTACTACCCCCAGCAGGCCTATCAGCATAACACCAGTACTC
AGGCTGATTTACTGCACGCCTCCTACCCCTCTACCGTGGGAAATTTCCCT
GTCCCCGCCATGCCAGGACCCGCAGGAGGAGCAGTAGCTGGGGCAGAGAT
ACCGGCACTGGCAGCAGGTGCGATAGGTGCCAAGGAGCAGAAGCAGCAGC
AGCATGCGGGCTCGGATCGCGCGGCGGCTGACTTGTTTGTCAACATGATG
AATGGAATTGGTGGGCCCACCACGTCCTCGTCCTCGTCCTCGTCCTCCGC
TTCCTCTGGTGCAGGTGTTCGAACCAATACAGTCGCCACGACCACTTGTT
AAGTATGCCTGTGCTGGTGGGAGGGTGGAGACAGATGGACAAAAAGATGG
CACACGAGTGTAGAAGGGATGGATAGGTCGCTTACAGGCTTTTAACTCTT
GCGATCTTTGTTTGTTTGTGTGCGTTGACGCGCGGAGGTGTCTATCCCCG
TCAGCAGAAAATCCCTTGTCTTTGTCTGTGTAGTGGAGGGGTATATGATT
GTGCATATGCCTCGCTATGTACCCTTAGTATGTGTATATCTGCGTTCATT
CCTTTTTCCACTCTATATCGGGAGAAGTGCAATTATATACATTAGTGTGC
GTGTTTTAACAGGACGAAGAGGGGGAGGGTGAAGAGGAGGAGGAAAAGGA
AAACAGCAGTCGTCACGAGTATTAATAGTATGGCGGAGGATACTATGGGG
GGGATGGGAAGAGAGAGGGTTGCGAAATTGTGGGAAAGGGCTCACTTACA
TTTTCCAGTCGCATGCAGCCCCCTTTAAGGTGAGTTGAGAGAGAGAGATG
ACTGACAAGCGGACGCGTGTAAAGACAGCTACGGATGATCGGGTGATGGT
TTGGCTTATTTCGAAAACGACCAAATTGTTATGGGCTGAAGAGACTGTTC
GTGGGGGAGAGAGGGGGAAAGAGAAAGAGGAAGAAACCATGCTCAAGGAG
AAAGAGTTTAAGGAAAGGTTGAAAAGGAGGAGAGCAAGACAAGGTGCTGA
AATTGGAACATCCCGAATCACCAACCAAGGAGGTGGTAACGGAAGCACAA
AGTACGAAGGAAGCTGGGAGAAAGGAAAGGAGGGATGCTTGCAAATCTTA
AAAGAGTTGAACGGTTAAATAGAAGCGTGCAACGACACGATCCAGGGGGT
ATTTATATTTTATGAATAAATATACTTTTTCCTTTATATTGACAGACCAG
GGAAGTGAGGAGCAGCAACTGAGAGGACAGGAATAAAAAGCAGAATGATG
ATCAAAGTACACCACGCTCACGTCATCAATAAATGAATCAAAGCACATA
back to top

protein sequence of NO03G00270.1

>NO03G00270.1-protein ID=NO03G00270.1-protein|Name=NO03G00270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=675bp
MRLTHDLSSPFSGLTPLPLSPTNTRTGSQRDQASSSSPYLLFLFYFLKSN
FASNMTASEELSLRYYEVCCLLLQRWKYSNQNNREDMNEASARSGASYDE
LRSILKHLRAKYMLGFNNAQKQGRYVGDFFGYYTSTKRPRGRPPTAGGEG
GVARAAASVPRVQQQQSARFVTGAGDLAHELEGSESGSARSSPAGAVERR
GGCMPSAPRLPSSRPRKAVAPYEPPVASTHSRSSSTSSVITAAGRGRKGA
GSKAQPVVKRSRGGVAAAAAAFSTAGRQQDMQVWEGQEAGSFRYESSHQE
SWYGNGGKEGEDTDEEYDEDAVVVMMMDDSSSSSKQREGSGAADSLFHLV
EAAEKASGKKKCHKKGAGLVGKTAAVAVARAVSPVEDDLGMLLLGLKARP
APFLRRESSLSLAPAAAVVEPIEAHVSAGSSSNSVNELSPSSNPLQSSLD
ATTLDGGASMCSLSTHTSSSGSNNNGSFYTGHPHGAPPGHQSMPSRLSYP
PMAYHAHAPPPPPPHHPHYYHPQHYYPHLYNQQQQQQQLQSQHPYHVHHH
HQQQQQLYQQQYYPQQAYQHNTSTQADLLHASYPSTVGNFPVPAMPGPAG
GAVAGAEIPALAAGAIGAKEQKQQQHAGSDRAAADLFVNMMNGIGGPTTS
SSSSSSSASSGAGVRTNTVATTTC*
back to top
Synonyms
Publications