NO02G06200, NO02G06200 (gene) Nannochloropsis oceanica

Overview
NameNO02G06200
Unique NameNO02G06200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2274
Alignment locationchr2:1667196..1669469 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin unc44
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1667196..1669469 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO02G06200 vs. NCBI_GenBank
Match: EWM27842.1 (ankyrin unc44 [Nannochloropsis gaditana])

HSP 1 Score: 483.8 bits (1244), Expect = 8.300e-133
Identity = 359/686 (52.33%), Postives = 409/686 (59.62%), Query Frame = 0 
Query:    3 NPSPAREE--------TSHGLPTTPRRGLHSNSLKLKGMLSDLLQQAKLECSSYRSGSRRDGHXXXXXXXXXXXXXXXXVTEETIERLCTSEYADDVLRICQKINGSGGHYAGGAGGSGRSSFDMSSTPGMGKGTTLFSSCGGRDGRSRRSSTMTXXXXXXXXXXXXXLAKDSAKGDKDFSTEGATAIADRDRSSSNGVTKASLSDXXXXXXXXXXXXXXXXXXXXXVLEPFSAARMIQAIEEGDVDRVRLFLLQYHRLSKPTVAVNALTRRPTPNFFHLALINRQEEVALFLLRHEGPTSAMIEAKDAQGRTSLMLAVIHNLLDVVKAL-----------------------------PFSLLARTRQRRRSLTPIDLRAVSAHGHRATCYAAIHGHIDILDFLLTHMSGGDSKVNFVACVQSQSAPCGHALLHHAVLGNHYRMIKWLVQKGAGVNVLTKGGAYEDGNRKWTPLHCAIHAFLTLR------LERASXXXXXXXXXXXXXXXXXXXXXSPLAPSMS---CSSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEREGKALKIIRWLVEEGKADMTLRDALGRTPLDLFLGSGLYQREVAGGCSSAENSPGRPGRGREGXXXXXXXXTSMKKVGKYLTLMQKKQRAVDAAMEELFDGENWKVG 643
            NPSPAREE          +  P  PR      S +LK ML++L+ QAKLEC+S  S S+ D                  +TEETIERLC SEYA+DVLRICQK+NGS  +  G     GR S         G G+T+FS    R   S  +ST+T                +     + F TE      DR RSSS GVTK+  SD                       E FS +RM  AIEEG++DRV   L QY RL  P+   N+  RRP PNFFH AL  RQE VAL LL+HEG +S MI+AKD QGRTSLMLAVI+NLL VVKAL                                         RSLTP+DLRAVS  GHRATCYAA++GHIDIL+FLLTHMSGGDS  NFV C+QSQSAPCGHALLHHAV GNHYR IKWLVQKGA VNV TKG A+E+G++KWTPLHCAIHAFL  +       E A                      SP   +++       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     ALKIIRWL+EEGKADM ++D  GRTP D+F+GS LYQRE +G  +S E SPGRPGR R+G        TSMK+VGKYL LMQKKQRAVDAAM ELFDGENW +G
Sbjct:    9 NPSPAREEEIPSFRLSQPNSSPKNPR-----TSQRLKCMLAELVLQAKLECNSNYSVSKEDNE---GIEEEEGDHNLGGLTEETIERLCKSEYANDVLRICQKMNGSSLNTNG-----GRESIGSPLENFKGTGSTIFSDIDDRQDLS--NSTLTITTKGGSGLPMKRSTSERVSNIETFLTE------DRGRSSSEGVTKSFPSDPSSSRRSSTSSSCLSSLCPKP--EEFSVSRMTSAIEEGNIDRVIHLLGQYRRLPTPSTTNNSPDRRPIPNFFHYALTLRQEGVALSLLQHEGSSSPMIDAKDPQGRTSLMLAVIYNLLGVVKALMLPPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLTPLDLRAVSIQGHRATCYAALNGHIDILEFLLTHMSGGDSSSNFVTCIQSQSAPCGHALLHHAVQGNHYRTIKWLVQKGANVNVPTKGSAFEEGHKKWTPLHCAIHAFLEAKKEAAIIREEAGRAGPLGGRDRGPGNRGGGLFSSPPFKTLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALKIIRWLIEEGKADMIVKDVHGRTPYDIFIGSTLYQRENSGSYNSNEMSPGRPGRRRDG----GREITSMKRVGKYLVLMQKKQRAVDAAMGELFDGENWDIG 667
The following BLAST results are available for this feature:
BLAST of NO02G06200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27842.18.300e-13352.33ankyrin unc44 [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G06200.1NO02G06200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G06200.1NO02G06200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G06200 ID=NO02G06200|Name=NO02G06200|organism=Nannochloropsis oceanica|type=gene|length=2274bp
ATGACCAACCCGTCTCCAGCACGGGAGGAGACCAGCCACGGCTTGCCCAC
TACACCCCGTCGAGGTCTGCACTCCAATTCCCTCAAATTGAAAGGGATGC
TATCGGACCTGCTCCAGCAAGCCAAATTAGAGTGCAGTAGTTATCGGAGT
GGGAGTAGGCGGGACGGACATGACGAGGAAGAGGGAGTGGAGGAAGAGGA
CGACGATGACCTGGGTGGGGTGACAGAAGAGACAATTGAGCGGCTGTGCA
CATCTGAGTACGCCGATGACGTTTTGAGAATTTGCCAAAAAATCAATGGC
AGTGGTGGACACTATGCTGGTGGTGCCGGTGGAAGTGGCAGGAGCAGCTT
CGACATGTCATCAACACCGGGCATGGGGAAGGGCACGACCCTCTTTTCTT
CGTGTGGTGGTAGAGACGGCCGCAGCAGGCGGAGCAGCACCATGACCTCC
AGCGGCGGCTACAGTAGAAGCAACAGAAGCAGCAGCCTAGCCAAGGACAG
TGCTAAGGGCGATAAAGACTTCAGCACGGAAGGTGCGACTGCCATAGCAG
ATAGGGACCGGAGCAGTAGCAACGGCGTCACCAAGGCCTCCCTCTCGGAT
TCCTCCCCCTCATTAGTCCCATCCTCCCCTCACTCTACTCCCTCCTCCTT
CTCCTCAAGCCCTGTCCTTGAGCCTTTTTCAGCCGCCCGCATGATCCAGG
CCATAGAAGAAGGCGACGTGGACCGGGTACGCCTCTTCCTATTGCAATAC
CATCGCCTCTCCAAGCCCACCGTGGCCGTCAATGCCCTTACCCGCCGTCC
AACCCCCAACTTCTTCCACTTGGCTCTCATAAATCGGCAGGAGGAAGTGG
CTCTTTTCCTCCTACGGCATGAGGGGCCCACCTCCGCCATGATAGAAGCG
AAGGACGCCCAAGGCAGGACGAGCCTGATGCTCGCCGTCATTCACAATCT
CCTCGACGTCGTCAAGGCCCTCgtccttccaccgtcctctctcccgtccc
cccctcctcctcctcctcctcctcctcctctttcaccccctccccttcat
tctctctctcctccaagCCTTTCTCCCTCCTCGCCCGCACGCGACAACGC
CGCCGCTCCCTCACCCCTATCGACCTCCGGGCTGTCTCCGCCCATGGGCA
CCGGGCCACGTGCTACGCGGCCATCCACGGCCACATCGATATCCTGGACT
TCCTCCTCACGCATATGAGCGGCGGTGACAGTAAGGTCAACTTTGTCGCA
TGCGTGCAGTCCCAGTCGGCCCCCTGTGGGCATGCCTTGCTACATCATGC
AGTGCTTGgtaagtgtcctctcttctttcctccctccctcccacattccc
cccccttttcactctctccgttatcgaactcttgcgcgagtcagtcgggg
attacgttttcacactcttggtgtcattctttcctccccttccctccctc
cctctccctgcggaatcggaacaagatcgtcgaatgactcaccgaaaaga
gagcaagtgccatccacactcaccctccccccgtcccttcatccctcccg
tccttcagGTAATCACTACCGAATGATCAAGTGGCTGGTGCAAAAGGGGG
CGGGCGTCAACGTGCTGACGAAGGGGGGAGCCTACGAGGACGGCAATCGC
AAATGGACTCCCCTCCACTGTGCCATCCACGCGTTTCTGACCCTCAGGCT
CGAGCGCGCGAGCCAGGAAGGAGGAGGAGGAGGGGCCGGAGGCGGGGCTG
GGGGGCGGGCGGCCGCGTTATTCCAATCCCCGCTTGCCCCTTCCATGTCT
TGCAGCTCGATGCTGTCGCCCTCTGCCCTTCCGGCGCGCTCTCCCTCCCT
CCTTGCTTCCTTCTCCTTCTCCTCCCCTCTCTCCACCACCTCCCCCTCCA
CCCCGACCCGCACGTCCACTCGCGCAAAAGAAGGTGGGAGGGAGGAGCGG
GAGGGGAAAGCCCTCAAGATCATTCGGTGGCTAGTGGAGGAAGGGAAGGC
GGACATGACGCTTCGTGACGCCCTTGGTCGAACCCCGCTGGACCTCTTTT
TGGGCAGCGGGCTCTACCAGCGGGAGGTCGCTGGTGGGTGCAGCAGCGCC
GAGAACAGCCCGGGACGGCCGGGGCGAGGGCGGGAGGGAGGGCGGGAGGG
AGGGAGGGAGGCGACGTCGATGAAGAAAGTAGGGAAGTACCTGACCCTGA
TGCAGAAGAAGCAGCGAGCCGTGGACGCTGCTATGGAGGAGCTCTTCGAC
GGGGAAAACTGGAAAGTGGGCTAG
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protein sequence of NO02G06200.1

>NO02G06200.1-protein ID=NO02G06200.1-protein|Name=NO02G06200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=643bp
MTNPSPAREETSHGLPTTPRRGLHSNSLKLKGMLSDLLQQAKLECSSYRS
GSRRDGHDEEEGVEEEDDDDLGGVTEETIERLCTSEYADDVLRICQKING
SGGHYAGGAGGSGRSSFDMSSTPGMGKGTTLFSSCGGRDGRSRRSSTMTS
SGGYSRSNRSSSLAKDSAKGDKDFSTEGATAIADRDRSSSNGVTKASLSD
SSPSLVPSSPHSTPSSFSSSPVLEPFSAARMIQAIEEGDVDRVRLFLLQY
HRLSKPTVAVNALTRRPTPNFFHLALINRQEEVALFLLRHEGPTSAMIEA
KDAQGRTSLMLAVIHNLLDVVKALPFSLLARTRQRRRSLTPIDLRAVSAH
GHRATCYAAIHGHIDILDFLLTHMSGGDSKVNFVACVQSQSAPCGHALLH
HAVLGNHYRMIKWLVQKGAGVNVLTKGGAYEDGNRKWTPLHCAIHAFLTL
RLERASQEGGGGGAGGGAGGRAAALFQSPLAPSMSCSSMLSPSALPARSP
SLLASFSFSSPLSTTSPSTPTRTSTRAKEGGREEREGKALKIIRWLVEEG
KADMTLRDALGRTPLDLFLGSGLYQREVAGGCSSAENSPGRPGRGREGGR
EGGREATSMKKVGKYLTLMQKKQRAVDAAMEELFDGENWKVG*
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Synonyms
Publications