NO02G06140, NO02G06140 (gene) Nannochloropsis oceanica

Overview
NameNO02G06140
Unique NameNO02G06140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1868
Alignment locationchr2:1644650..1646517 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1644650..1646517 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO02G06140 vs. NCBI_GenBank
Match: XP_009034023.1 (hypothetical protein AURANDRAFT_70829 [Aureococcus anophagefferens] >EGB11680.1 hypothetical protein AURANDRAFT_70829 [Aureococcus anophagefferens])

HSP 1 Score: 70.5 bits (171), Expect = 1.700e-8
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 0 
Query:   28 GWWRNGRWSDQELRYLDVLKQDFEDGVLDNGLEEGTTFRLYASDILQCDPMRVSKRFSHDQKIGLLKYTPREDLHTPAYLSSRTRRRDEVASI 121
            G  R G+W+ +E RY++ + +DF +G+L      GTT R Y S+ L CDPMR++K+F+ D  IG   Y PRE+   PA      R R EVA +
Sbjct:    5 GGLRRGKWTVEEERYVERVIRDFNNGLLH--AAPGTTLRNYLSEKLNCDPMRITKKFTGDASIGKRVYHPRENAPEPAV----ERARREVAEL 91
[Close]
BLAST of NO02G06140 vs. NCBI_GenBank
Match: XP_008916120.1 (hypothetical protein PPTG_19424 [Phytophthora parasitica INRA-310] >ETI54063.1 hypothetical protein F443_03081 [Phytophthora parasitica P1569] >ETL47299.1 hypothetical protein L916_02923 [Phytophthora parasitica] >ETM00405.1 hypothetical protein L917_02849 [Phytophthora parasitica] >ETM53606.1 hypothetical protein L914_02912 [Phytophthora parasitica] >ETM98578.1 hypothetical protein PPTG_19424 [Phytophthora parasitica INRA-310] >ETP23859.1 hypothetical protein F441_03055 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 68.2 bits (165), Expect = 8.300e-8
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 0 
Query:    8 NGHRTTACASPAIMKERRQKGWWRNGRWSDQELRYLDVLKQDFEDGVLDNGLEEGTTFRLYASDILQCDPMRVSKRFSHDQKIGLLKYTPRED 101
            +G+ T A   P  M         R G+W+ +E  Y D L ++F+ G L   L EGTT R + S +L CDPMR+SK+++ DQ IG + +  RED
Sbjct:  151 DGNSTPASNPPTAM---------RKGKWTAEESAYCDRLIEEFKKGNLP--LAEGTTLRTFLSKLLNCDPMRISKKYTGDQCIGKIIFRRRED 232
[Close]
BLAST of NO02G06140 vs. NCBI_GenBank
Match: ETK93911.1 (hypothetical protein L915_02947 [Phytophthora parasitica])

HSP 1 Score: 68.2 bits (165), Expect = 8.300e-8
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 0 
Query:    8 NGHRTTACASPAIMKERRQKGWWRNGRWSDQELRYLDVLKQDFEDGVLDNGLEEGTTFRLYASDILQCDPMRVSKRFSHDQKIGLLKYTPRED 101
            +G+ T A   P  M         R G+W+ +E  Y D L ++F+ G L   L EGTT R + S +L CDPMR+SK+++ DQ IG + +  RED
Sbjct:  151 DGNSTPASNPPTAM---------RKGKWTAEESAYCDRLIEEFKKGNLP--LAEGTTLRTFLSKLLNCDPMRISKKYTGDQCIGKIIFRRRED 232
[Close]
BLAST of NO02G06140 vs. NCBI_GenBank
Match: ETO82754.1 (hypothetical protein F444_03122 [Phytophthora parasitica P1976])

HSP 1 Score: 68.2 bits (165), Expect = 8.300e-8
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 0 
Query:    8 NGHRTTACASPAIMKERRQKGWWRNGRWSDQELRYLDVLKQDFEDGVLDNGLEEGTTFRLYASDILQCDPMRVSKRFSHDQKIGLLKYTPRED 101
            +G+ T A   P  M         R G+W+ +E  Y D L ++F+ G L   L EGTT R + S +L CDPMR+SK+++ DQ IG + +  RED
Sbjct:  151 DGNSTPASNPPTAM---------RKGKWTAEESAYCDRLIEEFKKGNLP--LAEGTTLRTFLSKLLNCDPMRISKKYTGDQCIGKIIFRRRED 232
[Close]
BLAST of NO02G06140 vs. NCBI_GenBank
Match: ETP51858.1 (hypothetical protein F442_03042 [Phytophthora parasitica P10297])

HSP 1 Score: 68.2 bits (165), Expect = 8.300e-8
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 0 
Query:    8 NGHRTTACASPAIMKERRQKGWWRNGRWSDQELRYLDVLKQDFEDGVLDNGLEEGTTFRLYASDILQCDPMRVSKRFSHDQKIGLLKYTPRED 101
            +G+ T A   P  M         R G+W+ +E  Y D L ++F+ G L   L EGTT R + S +L CDPMR+SK+++ DQ IG + +  RED
Sbjct:  151 DGNSTPASNPPTAM---------RKGKWTAEESAYCDRLIEEFKKGNLP--LAEGTTLRTFLSKLLNCDPMRISKKYTGDQCIGKIIFRRRED 232
[Close]
BLAST of NO02G06140 vs. NCBI_GenBank
Match: KUF92238.1 (40S ribosomal protein S23 [Phytophthora nicotianae])

HSP 1 Score: 68.2 bits (165), Expect = 8.300e-8
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 0 
Query:    8 NGHRTTACASPAIMKERRQKGWWRNGRWSDQELRYLDVLKQDFEDGVLDNGLEEGTTFRLYASDILQCDPMRVSKRFSHDQKIGLLKYTPRED 101
            +G+ T A   P  M         R G+W+ +E  Y D L ++F+ G L   L EGTT R + S +L CDPMR+SK+++ DQ IG + +  RED
Sbjct:   44 DGNSTPASNPPTAM---------RKGKWTAEESAYCDRLIEEFKKGNLP--LAEGTTLRTFLSKLLNCDPMRISKKYTGDQCIGKIIFRRRED 125
[Close]
BLAST of NO02G06140 vs. NCBI_GenBank
Match: KUG01313.1 (hypothetical protein AM587_10012167 [Phytophthora nicotianae])

HSP 1 Score: 68.2 bits (165), Expect = 8.300e-8
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 0 
Query:    8 NGHRTTACASPAIMKERRQKGWWRNGRWSDQELRYLDVLKQDFEDGVLDNGLEEGTTFRLYASDILQCDPMRVSKRFSHDQKIGLLKYTPRED 101
            +G+ T A   P  M         R G+W+ +E  Y D L ++F+ G L   L EGTT R + S +L CDPMR+SK+++ DQ IG + +  RED
Sbjct:  124 DGNSTPASNPPTAM---------RKGKWTAEESAYCDRLIEEFKKGNLP--LAEGTTLRTFLSKLLNCDPMRISKKYTGDQCIGKIIFRRRED 205
[Close]
BLAST of NO02G06140 vs. NCBI_GenBank
Match: CCA19036.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 67.4 bits (163), Expect = 1.400e-7
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 0 
Query:   31 RNGRWSDQELRYLDVLKQDFEDGVLDNGLEEGTTFRLYASDILQCDPMRVSKRFSHDQKIGLLKYTPRE 100
            R G+W+ +E  Y D L ++F++G L   L EGTT R + S +LQCDPMR+SK+++ DQ IG + +  RE
Sbjct:  132 RKGKWTAEESAYCDRLIEEFKNGKLP--LAEGTTLRAFLSRLLQCDPMRISKKYTGDQCIGKIVFRRRE 198
[Close]
BLAST of NO02G06140 vs. NCBI_GenBank
Match: POM80840.1 (Zinc ion binding protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 67.0 bits (162), Expect = 1.800e-7
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 0 
Query:    5 DSQNGHRTTACASPAIMKERRQKGWWRNGRWSDQELRYLDVLKQDFEDGVLDNGLEEGTTFRLYASDILQCDPMRVSKRFSHDQKIGLLKYTPRED 101
            ++  G  T A    A ++        R G+W+ +E  Y D L ++F+ G L   L EGTT R + S +L CDPMR+SK+++ DQ IG + +  RED
Sbjct:  108 NAAGGTPTAAANGEANVQAANPPTAMRKGKWTAEESAYCDRLIEEFKKGNLP--LAEGTTLRTFLSKLLNCDPMRISKKYTGDQCIGKIIFRRRED 201
[Close]
BLAST of NO02G06140 vs. NCBI_GenBank
Match: XP_009537815.1 (hypothetical protein PHYSODRAFT_565861 [Phytophthora sojae] >EGZ07051.1 hypothetical protein PHYSODRAFT_565861 [Phytophthora sojae])

HSP 1 Score: 66.6 bits (161), Expect = 2.400e-7
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 0 
Query:   31 RNGRWSDQELRYLDVLKQDFEDGVLDNGLEEGTTFRLYASDILQCDPMRVSKRFSHDQKIGLLKYTPRED 101
            R G+W+ +E  Y D L ++F+ G L   L EGTT R + S +L CDPMR+SK+++ DQ IG + +  RED
Sbjct:  168 RKGKWTAEESAYCDRLIEEFKKGNLP--LAEGTTLRTFLSKLLNCDPMRISKKYTGDQCIGKIIFRRRED 235
The following BLAST results are available for this feature:
BLAST of NO02G06140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 14
Match NameE-valueIdentityDescription
XP_009034023.11.700e-841.94hypothetical protein AURANDRAFT_70829 [Aureococcus... [more]
XP_008916120.18.300e-839.78hypothetical protein PPTG_19424 [Phytophthora para... [more]
ETK93911.18.300e-839.78hypothetical protein L915_02947 [Phytophthora para... [more]
ETO82754.18.300e-839.78hypothetical protein F444_03122 [Phytophthora para... [more]
ETP51858.18.300e-839.78hypothetical protein F442_03042 [Phytophthora para... [more]
KUF92238.18.300e-839.7840S ribosomal protein S23 [Phytophthora nicotianae... [more]
KUG01313.18.300e-839.78hypothetical protein AM587_10012167 [Phytophthora ... [more]
CCA19036.11.400e-746.38conserved hypothetical protein [Albugo laibachii N... [more]
POM80840.11.800e-737.50Zinc ion binding protein [Phytophthora palmivora v... [more]
XP_009537815.12.400e-745.71hypothetical protein PHYSODRAFT_565861 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G06140.1NO02G06140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100758g2gene567Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G06140.1NO02G06140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G06140 ID=NO02G06140|Name=NO02G06140|organism=Nannochloropsis oceanica|type=gene|length=1868bp
ATGCCCGGCCCCGACAGCCAGAACGGGCACCGGACGACGGCGTGTGCGAG
TCCGGCGATCATGAAGGAGAGGCGGCAGAAGGGGTGGTGGAGAAATGGCA
GGTGGTCAGACCAGGAGCTGCGGTACTTGGACGTCTTGAAGCAGGATTTC
GAGGACGgtaggtatccatcgcttgtgtggaggttggaatgccttctcct
ttcctcccctccccctctctccccccctctcttttcctgttttctgacct
cgtctgtttgtcgaccgacccgaaggcgtctcctgccctcgggtttatcc
ccagtcttgtcccactagccctctgtttctttcctcccactctttccttc
tccctccttccccttaacccatacgcgcgcttgaagtcacgcacccactt
cctcccttcttccacctcctctagGCGTGCTGGATAATGGCCTCGAGGAG
GGCACCACCTTCCGGCTCTACGCGAGCGATATTCTCCAGTGCGACCCCAT
GCGTGTTTCGAAGCGCTTTTCGCACGACCAGAAGATCGGCCTGCTCAAGT
ATACCCCCCGGGAAGACCTCCACACACCCGCCTACCTCTCCTCCCGCACT
CGCCGCCGCGACGAGGTGGCCTCCATCTTTTGGGCCCAAGTCGACCGGAA
GAACCGCGGTGACGTCTCGTACATAACCTCCTCCTCCGGCGTGCCAACCT
CCTATCCTGCCTCCTCCTACCCCCATCACCCCCCGCACCACGGTCCTCCG
TCCAGCGGCCTGCCACACCCAGGGCCCGTCGTCCTCCCTCATGCCGGTGT
GCCCATGTCCCTCAACGGCCCTCCCACCCTGCCTCGCCCGCCCCCTCCCA
CGCACGGCCTGCCGTCGCATTCCTACCTCTATCCCCCGCCCCCATTGGCC
AGCCTGTCTTCCTCCTCCCCTTCCTCCCCTTCCTCGGCCCCTGGCTCCTC
CGTCGCAGGAGGGGCCGGGCCGCCTTCGCCAGCCTCTGCAGCAGCAGCAG
CAACGGCAGCAGCAGCAGGAGGAGGAGGAAGAGGAGGCACCAGTGCTCGG
TATGGTGGAGGCGCAAGGGAGGGAGGGAGGGAAGGCGGGACGGAGGGAAA
GGGAAGCAGCGAACATACCAGTGCCCTTCCCAAGAAGAAGCGGCCGCTGG
CCCAGCCACAGCCCCAGACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCAACCTCGACCTCGACCTCGACCTCGACTTTGACCTTGAC
TGCCGGGACGACAACGAGTGTGACAGGGAAGGAGGAGGGGGAGGGAGGGA
AGGAGGAAGGGAAGGAGGGGTGGAGGAATGAGGCAGAGAGGGAGAGTGCC
ATGACGATGATTTTATTGACAGGACTTAAAAACTCGCCTTCACAGGCGCC
CAAGACGCTGGACCAGCTGCAGCCTGTGGAGGGGGAGCAACAGGGGGGGG
GGAGGGGGAAGGGGGGAAGGAGGGAGGGGAAAGAGAGGGAAAGAAGgtag
tgacaatgtcgcaggcgaaggagagtaaggaggaggagcaggaggaggag
gagccaaagggggaaagggaggtgcagggaaggaggaagggaaagaagag
gaaaagcaataaaagaggggacgacagTTCAGCGCAGGAGGGGAGAGAGG
AAGGGAGAGAGGGGGAGGAGGAAGAGTCCTCGTTGCCCCTGCTGAAGAAG
TCTCGGCCTCTGTCGTCTTCAGCGGCTCCGCCTGTGACGGCCAGTGCGGC
TGGTGGTGGGGAAGGAGGAGAAGGAGGGAGGGGCGGGAGGACAGGAGGAA
GATCGTTGTCGTCCTCCTCCCTCTCGTCCTCTTCCTCCTCGGCGTCCTCA
CGTACGGGGACACTCTAA
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protein sequence of NO02G06140.1

>NO02G06140.1-protein ID=NO02G06140.1-protein|Name=NO02G06140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MPGPDSQNGHRTTACASPAIMKERRQKGWWRNGRWSDQELRYLDVLKQDF
EDGVLDNGLEEGTTFRLYASDILQCDPMRVSKRFSHDQKIGLLKYTPRED
LHTPAYLSSRTRRRDEVASIFWAQVDRKNRGDVSYITSSSGVPTSYPASS
YPHHPPHHGPPSSGLPHPGPVVLPHAGVPMSLNGPPTLPRPPPPTHGLPS
HSYLYPPPPLASLSSSSPSSPSSAPGSSVAGGAGPPSPASAAAAATAAAA
GGGGRGGTSARYGGGAREGGREGGTEGKGSSEHTSALPKKKRPLAQPQPQ
TPSLPPSLPPSLPPSTSTSTSTSTLTLTAGTTTSVTGKEEGEGGKEEGKE
GWRNEAERESAMTMILLTGLKNSPSQAPKTLDQLQPVEGEQQGGGRGKGG
RREGKERERSSAQEGREEGREGEEEESSLPLLKKSRPLSSSAAPPVTASA
AGGGEGGEGGRGGRTGGRSLSSSSLSSSSSSASSRTGTL*
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Synonyms
Publications