NO02G06080, NO02G06080 (gene) Nannochloropsis oceanica

Overview
NameNO02G06080
Unique NameNO02G06080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2283
Alignment locationchr2:1625902..1628184 +

Link to JBrowse

Properties
Property NameValue
DescriptionYAP-binding/Alf4/Glomulin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1625902..1628184 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013877YAP-bd/ALF4/Glomulin
Homology
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BLAST of NO02G06080 vs. NCBI_GenBank
Match: EWM30068.1 (YAP-binding/Alf4/Glomulin [Nannochloropsis gaditana])

HSP 1 Score: 481.9 bits (1239), Expect = 3.700e-132
Identity = 330/768 (42.97%), Postives = 402/768 (52.34%), Query Frame = 0 
Query:    7 DDDSELTALLEQALLSTSDSNAGQALGQVVQARLTDVRAVPSIVARLWHTFFAGNKDDDASMRE----SESKVLHFIGWDLFEALVPWARGGDDCSSSSSXXXXXXXXXXXXXXXXXXXXFLIPLLSAILGLHSGRERLLMLQEALALAPRRTHPSFVPWLVAQMPPALAVIPAPRRKSFLDSICRVWREEAVKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRLTGKEAQAILMSVLEAVEALVPRIVTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLG------------KVHMHQPSNSFCFAERVTAVLARALTCTHLVSFETLLRHHRGLKEQRRTIPHTHYVQSGARNTSINETDEYNDNITDEKDGVSRERKRFTAIEVGPLIPASAVASTPFAWEPAGLSLAAYHLFIHPPSLPVSLLPRVLASAYVGQLLAVPAAFLLQKPQAAPCGLALLERGTLASF-PSQGG--ERGRVKRGGEGVLECRALGG--GSSRSDRNEGXXXXXXXXXXXXXEDTWASLIKGLTGCMVFLADDTIRQRAYLALPRVLALLTYRSRYFCLAAALPRSHHPTIQALLISQAQKTLLLATTPTTS-TPSSFPPSPWHDLTRLRVFYAPVLSRTCAAKPEVLVSWAXXXXXXXXXXXXXXXXGTEGQLDALLSALNFLRFLRLKGRFEEGGEEEGEWWPKLRELQGRVREILSKPHQQRNAFRLAMVDEVLAILLGKDGEGKEDKKEG 753
            DDD +L  LL  AL S+ D    Q LGQ+++ARLTD       V RLW  F   + ++ A  +E    +++KVLH +GWDLF AL PWARG  D   S                      FLIPL++AIL  H+GRERL++LQEA++  P RTHPSFVPWL+ QMP A A+I  P R  F++++CR+W E+  KA                                  ++T  EA A+LM+VL A++  +  +  R                                      XXXXXXXX               V   +     C   R   VL      +   SF+ LLRHHRGL E     P                 +E      + K+G      R        L P+  VAST FAWEP GLSLA YHL +HPPSLP  ++PRVL   Y+  LLA+PAA LLQ P  A CGLALLERG +    PS  G  E  R   GGEG L CRA  G   S      E              EDTW SL++GLT CMVFLADD +RQRAY  LPRVL LLTY S+Y CLA ALPR+HHP+IQALLIS AQK+ LLAT P +S  P+S PPSPWH L  LRVFYAP LS+ C AKPE+LVSWA                  EG+LD LLSALNF R L LKG +   GEEE  WWP L  L+ ++ +IL KPHQ+RNAFRLAMV+EV+  ++G  GEGK D+ EG
Sbjct:    9 DDDPDLNRLLNNALESSEDIEVLQELGQLIEARLTDAATFSPTVHRLWENFVTTSLENGAEKKEKDNMAKAKVLHSLGWDLFGALTPWARGEGDGKQS---LEAPSPSFSSSTSSSIISPFLIPLMNAILASHTGRERLIILQEAMSQVPHRTHPSFVPWLIEQMPSAHAMITGPTRVYFIETMCRMWHEQVGKA--------WEAMEQNGSDGEDDMDQDAMDKENVAQMTKLEAHAVLMAVLAAMQNTLTDLPARTEAGKEKLSGLQEEAALSGISAAYVVGLLLSLLARAPPXXXXXXXXXHPMPLAATTDANFDVGSRRSQGEECVWTRHLVVLLAQALSSPWCSFQDLLRHHRGLHEGPGPRP---------------RREEGRVRGEEGKEGKGGAEGR------PALSPSLTVASTSFAWEPLGLSLATYHLIVHPPSLPAPVVPRVLHPLYLAPLLALPAARLLQNPSNASCGLALLERGPIPILGPSVQGETEMRRGWEGGEGRLHCRARPGSEASGAGADTENTGRGTPSSEASADEDTWLSLVRGLTACMVFLADDALRQRAYQVLPRVLRLLTYTSQYHCLATALPRAHHPSIQALLISYAQKSFLLATRPNSSPLPASLPPSPWHQLAYLRVFYAPTLSQACQAKPELLVSWA-----STDSTIQDAAGSNEGRLDVLLSALNFYRLLCLKG-WVVDGEEESRWWPALTSLRRKLHDILRKPHQRRNAFRLAMVEEVVDSVIG-TGEGKWDEGEG 737
The following BLAST results are available for this feature:
BLAST of NO02G06080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30068.13.700e-13242.97YAP-binding/Alf4/Glomulin [Nannochloropsis gaditan... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007294NSK007294Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G06080.1NO02G06080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100173g3gene573Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G06080.1NO02G06080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G06080 ID=NO02G06080|Name=NO02G06080|organism=Nannochloropsis oceanica|type=gene|length=2283bp
ATGCAGGCCGATGGCGAGGACGACGACTCCGAGCTGACGGCACTGTTGGA
GCAGGCCTTGCTTTCGACTTCGGACAGTAACGCTGGCCAAGCGCTAGGCC
AAGTCGTGCAAGCCCGCCTCACCGATGTCAGAGCCGTTCCCTCCATCGTC
GCCCGCCTGTGGCACACATTTTTTGCTGGGAACAAAGACGATGATGCTTC
GATGAGGGAGTCTGAGAGCAAGGTACTGCATTTCATCGGCTGGGATCTTT
TTGAGGCTCTCGTGCCGTGGGCTCGAGGTGGCGATGACTGCAGCAGCAGC
AGCAGCGATGCCATGGACTCCTCTTCCGCTTCTCCTTTCTCCTCTACCTC
CTCGTCTCCCTCTCCCTTCCTTATCCCTCTCCTTTCCGCCATATTGGGTC
TGCATAGCGGGCGGGAACGCTTGCTCATGCTACAGGAGGCCTTGGCGTTA
GCTCCACGTCGCACCCACCCTTCATTCGTCCCTTGGCTCGTAGCACAGAT
GCCGCCTGCGCTTGCTGTCATTCCTGCTCCGCGACGCAAAAGCTTCCTTG
ACTCGATTTGTCGGGTATGGCGGGAAGAAGCTGTCAAGGCGCTGGCTGCG
ATGGAGGAGGGAGAGGACGGGGAAAGGGAGGAAGAGGAGGAGGAAGAGAA
AGGAGACGTGGAAGAGGAGGAGGATGGGAAGGGAAAGGAACGGCGATTGA
CGGGAAAAGAAGCGCAGGCCATTCTTATGTCGGTGCTGGAAGCAGTAGAG
GCCTTGGTACCTAGGATTGTAACAAGGAGAGGGCAAATGATGGAAGAGGA
GTCGGTGGAGGATGCAGCGGCTGCGGTGGTGGAAATGGGCTACGTGATAG
GCGTCCTGCTGGCGCTGCTGCTCATGGCACCGCCCCTCCCTCCACCACCA
CCGCCTTCCTCCGCCCTTGGAAAAGTACACATGCACCAGCCATCGAATTC
CTTCTGTTTCGCCGAGCGCGTGACTGCCGTCCTCGCCCGGGCCCTTACCT
GTACTCACTTGGTCAGCTTCGAGACCCTGCTCCGACATCACCGCGGCCTG
AAAGAGCAGCGGAGAACCATTCCTCACACACACTATGTGCAGAGCGGCGC
CCGAAACACAAGTATAAATGAGACGGATGAATACAACGACAACATCACCG
ACGAGAAAGACGGCGTGAGCAGAGAAAGAAAGCGGTTTACTGCAATTGAG
GTTGGTCCTCTCATTCCTGCTTCTGCCGTGGCCTCCACCCCCTTTGCCTG
GGAACCTGCAGGCCTGAGCCTCGCAGCCTATCACCTTTTTATCCATCCCC
CCTCCCTCCCTGTATCCCTGCTTCCTCGAGTGCTGGCCAGTGCCTACGTC
GGGCAGCTGCTGGCGGTGCCTGCCGCGTTTCTACTGCAGAAGCCTCAGGC
CGCGCCTTGTGGCCTTGCTCTATTGGAAAGAGGGACACTTGCATCATTCC
CCTCGCAAGGAGGGGAAAGGGGAAGAGTAAAAAGGGGAGGGGAAGGTGTT
TTGGAGTGCCGGGCGCTTGGTGGCGGTAGTAGTAGAAGTGACCGCAACGA
GGGAGGGAAGGAAGAAGGAGGAGCAACAGAAGACAGGGAAGAAGAAGACA
CATGGGCAAGCCTGATAAAGGGCCTGACGGGATGCATGGTCTTCCTCGCT
GACGACACCATCCGACAACGGGCGTATCTCGCCCTCCCTCGCGTCCTCGC
TCTATTGACCTACCGCAGCCGTTACTTCTGTCTGGCGGCCGCCCTCCCTC
GCTCCCACCACCCCACGATCCAAGCCCTCCTCATCTCGCAAGCCCAGAAG
ACCTTGCTCCTCGCCACTACTCCCACCACCTCCACTCCTTCCTCCTTCCC
GCCCTCGCCTTGGCATGACCTGACGCGGCTGCGAGTGTTCTACGCCCCTG
TCCTTTCGAGGACATGCGCAGCCAAGCCAGAAGTCCTTGTCTCCTGGGCT
GCTGCCACCACCACCAGCAGAAGCAGCAGCGGCGGCGGGGCAGCGACCGG
GACAGAAGGACAGCTTGATGCCTTATTGTCTGCTTTGAACTTCCTCCGTT
TCCTGCGGCTCAAGGGTCGGTTTGAGGAAGGGGGGGAGGAGGAGGGGGAG
TGGTGGCCGAAGCTGCGGGAGCTGCAAGGGAGGGTGAGAGAAATCTTGAG
CAAGCCTCACCAGCAGCGGAATGCCTTCAGACTGGCAATGGTGGACGAGG
TGCTGGCGATCTTGCTTGGGAAAGATGGAGAGGGAAAGGAGGATAAGAAG
GAGGGAACGGGGATGAGGGAGGTCGCGGTTTAA
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protein sequence of NO02G06080.1

>NO02G06080.1-protein ID=NO02G06080.1-protein|Name=NO02G06080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=761bp
MQADGEDDDSELTALLEQALLSTSDSNAGQALGQVVQARLTDVRAVPSIV
ARLWHTFFAGNKDDDASMRESESKVLHFIGWDLFEALVPWARGGDDCSSS
SSDAMDSSSASPFSSTSSSPSPFLIPLLSAILGLHSGRERLLMLQEALAL
APRRTHPSFVPWLVAQMPPALAVIPAPRRKSFLDSICRVWREEAVKALAA
MEEGEDGEREEEEEEEKGDVEEEEDGKGKERRLTGKEAQAILMSVLEAVE
ALVPRIVTRRGQMMEEESVEDAAAAVVEMGYVIGVLLALLLMAPPLPPPP
PPSSALGKVHMHQPSNSFCFAERVTAVLARALTCTHLVSFETLLRHHRGL
KEQRRTIPHTHYVQSGARNTSINETDEYNDNITDEKDGVSRERKRFTAIE
VGPLIPASAVASTPFAWEPAGLSLAAYHLFIHPPSLPVSLLPRVLASAYV
GQLLAVPAAFLLQKPQAAPCGLALLERGTLASFPSQGGERGRVKRGGEGV
LECRALGGGSSRSDRNEGGKEEGGATEDREEEDTWASLIKGLTGCMVFLA
DDTIRQRAYLALPRVLALLTYRSRYFCLAAALPRSHHPTIQALLISQAQK
TLLLATTPTTSTPSSFPPSPWHDLTRLRVFYAPVLSRTCAAKPEVLVSWA
AATTTSRSSSGGGAATGTEGQLDALLSALNFLRFLRLKGRFEEGGEEEGE
WWPKLRELQGRVREILSKPHQQRNAFRLAMVDEVLAILLGKDGEGKEDKK
EGTGMREVAV*
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Synonyms
Publications