NO02G06050, NO02G06050 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G06050
Unique Name	NO02G06050
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1841
Alignment location	chr2:1618752..1620592 -

Link to JBrowse

Properties


Property Name	Value
Description	Transcriptional activator myb

Mutants

Expression

Analysis:

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1618752..1620592 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeodomain-like
IPR017930	Myb_dom
IPR001005	SANT/Myb

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Homology

[Close]

BLAST of NO02G06050 vs. NCBI_GenBank
Match: EWM30072.1 (transcriptional activator myb [Nannochloropsis gaditana])

HSP 1 Score: 246.5 bits (628), Expect = 2.000e-61
Identity = 112/129 (86.82%), Postives = 117/129 (90.70%), Query Frame = 0

Query:  145 HDPNKRHTWTTEEDRRLKELVHTVGPKKWGIISTHFNNRNAKQCHQRWHYVLKPCITREPWTEEEDQAIMQYQIQIGNKWSHIAKYLSGRTGYAIRNRYNFLQKRLLEENQRHFRPFLGPPVALHMYAA 274
            HDPNKRHTWT EEDRRLKELV TVGP+KWGIISTHF NRNAKQCHQRWHYVLKP ITREPWTEEED AIMQYQIQIGNKWS IAK+L GRTGYAIRNRYNFL KR LEE QRHFRPFLGPP++LH+  A
Sbjct:    2 HDPNKRHTWTGEEDRRLKELVRTVGPRKWGIISTHFKNRNAKQCHQRWHYVLKPSITREPWTEEEDNAIMQYQIQIGNKWSQIAKFLHGRTGYAIRNRYNFLSKRQLEEAQRHFRPFLGPPLSLHIQPA 130

[Close]

BLAST of NO02G06050 vs. NCBI_GenBank
Match: EWM24723.1 (myb family transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 155.6 bits (392), Expect = 4.600e-34
Identity = 75/127 (59.06%), Postives = 89/127 (70.08%), Query Frame = 0

Query:  130 HHRHAQLSHGGH--PSP------HDPNKRHTWTTEEDRRLKELVHTVGPKKWGIISTHFNNRNAKQCHQRWHYVLKPCITREPWTEEEDQAIMQYQIQIGNKWSHIAKYLSGRTGYAIRNRYNFLQK 249
            H++ A + H     P P       D  KR+TWT +ED+ L  LV   GPKKWGI++T+   RNAKQCHQRWHYVLKP I+RE WTE+ED  I  YQ  +GNKWSHIAKYLSGRTGYA+RNR+ FL K
Sbjct: 1253 HNKKASVFHAVKHLPGPLMGLAMEDDGKRNTWTADEDKILASLVEKYGPKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTEKEDYIIYHYQRLLGNKWSHIAKYLSGRTGYAVRNRHAFLVK 1379

[Close]

BLAST of NO02G06050 vs. NCBI_GenBank
Match: XP_013066115.1 (PREDICTED: transcriptional activator Myb-like isoform X1 [Biomphalaria glabrata])

HSP 1 Score: 119.8 bits (299), Expect = 2.800e-23
Identity = 57/135 (42.22%), Postives = 78/135 (57.78%), Query Frame = 0

Query:  135 QLSHGGHPSPHDPNKRHTWTTEEDRRLKELVHTVGPKKWGIISTHFNNRNAKQCHQRWHYVLKPCITREPWTEEEDQAIMQYQIQIGNKWSHIAKYLSGRTGYAIRNRYNFLQKRLLEENQRHFRPFLGPPVALH 270
            Q  H  H   +    +  WT EED R+ +LV+  GPK+W +IS H   R  KQC +RWH  L P I +  WTEEEDQ I Q   ++GN+W+ IAKYL GRT  AI+N +N   KR  E  +   R ++   ++L+
Sbjct:  104 QCQHRWHKVLNPDLIKGPWTREEDNRVIQLVNEYGPKRWTLISKHLKGRTGKQCRERWHNHLNPSIKKTAWTEEEDQLIYQLHRRLGNRWAEIAKYLPGRTDNAIKNHWNSTMKRKFEGEESSDRKYISNGLSLY 238

[Close]

BLAST of NO02G06050 vs. NCBI_GenBank
Match: XP_013066116.1 (PREDICTED: transcriptional activator Myb-like isoform X2 [Biomphalaria glabrata])

HSP 1 Score: 119.8 bits (299), Expect = 2.800e-23
Identity = 57/135 (42.22%), Postives = 78/135 (57.78%), Query Frame = 0

Query:  135 QLSHGGHPSPHDPNKRHTWTTEEDRRLKELVHTVGPKKWGIISTHFNNRNAKQCHQRWHYVLKPCITREPWTEEEDQAIMQYQIQIGNKWSHIAKYLSGRTGYAIRNRYNFLQKRLLEENQRHFRPFLGPPVALH 270
            Q  H  H   +    +  WT EED R+ +LV+  GPK+W +IS H   R  KQC +RWH  L P I +  WTEEEDQ I Q   ++GN+W+ IAKYL GRT  AI+N +N   KR  E  +   R ++   ++L+
Sbjct:  104 QCQHRWHKVLNPDLIKGPWTREEDNRVIQLVNEYGPKRWTLISKHLKGRTGKQCRERWHNHLNPSIKKTAWTEEEDQLIYQLHRRLGNRWAEIAKYLPGRTDNAIKNHWNSTMKRKFEGEESSDRKYISNGLSLY 238

[Close]

BLAST of NO02G06050 vs. NCBI_GenBank
Match: XP_013066117.1 (PREDICTED: transcriptional activator Myb-like isoform X3 [Biomphalaria glabrata])

HSP 1 Score: 119.8 bits (299), Expect = 2.800e-23
Identity = 57/135 (42.22%), Postives = 78/135 (57.78%), Query Frame = 0

Query:  135 QLSHGGHPSPHDPNKRHTWTTEEDRRLKELVHTVGPKKWGIISTHFNNRNAKQCHQRWHYVLKPCITREPWTEEEDQAIMQYQIQIGNKWSHIAKYLSGRTGYAIRNRYNFLQKRLLEENQRHFRPFLGPPVALH 270
            Q  H  H   +    +  WT EED R+ +LV+  GPK+W +IS H   R  KQC +RWH  L P I +  WTEEEDQ I Q   ++GN+W+ IAKYL GRT  AI+N +N   KR  E  +   R ++   ++L+
Sbjct:  104 QCQHRWHKVLNPDLIKGPWTREEDNRVIQLVNEYGPKRWTLISKHLKGRTGKQCRERWHNHLNPSIKKTAWTEEEDQLIYQLHRRLGNRWAEIAKYLPGRTDNAIKNHWNSTMKRKFEGEESSDRKYISNGLSLY 238

[Close]

BLAST of NO02G06050 vs. NCBI_GenBank
Match: XP_013066118.1 (PREDICTED: transcriptional activator Myb-like isoform X4 [Biomphalaria glabrata])

HSP 1 Score: 119.8 bits (299), Expect = 2.800e-23
Identity = 57/135 (42.22%), Postives = 78/135 (57.78%), Query Frame = 0

Query:  135 QLSHGGHPSPHDPNKRHTWTTEEDRRLKELVHTVGPKKWGIISTHFNNRNAKQCHQRWHYVLKPCITREPWTEEEDQAIMQYQIQIGNKWSHIAKYLSGRTGYAIRNRYNFLQKRLLEENQRHFRPFLGPPVALH 270
            Q  H  H   +    +  WT EED R+ +LV+  GPK+W +IS H   R  KQC +RWH  L P I +  WTEEEDQ I Q   ++GN+W+ IAKYL GRT  AI+N +N   KR  E  +   R ++   ++L+
Sbjct:  104 QCQHRWHKVLNPDLIKGPWTREEDNRVIQLVNEYGPKRWTLISKHLKGRTGKQCRERWHNHLNPSIKKTAWTEEEDQLIYQLHRRLGNRWAEIAKYLPGRTDNAIKNHWNSTMKRKFEGEESSDRKYISNGLSLY 238

[Close]

BLAST of NO02G06050 vs. NCBI_GenBank
Match: XP_013066119.1 (PREDICTED: myb-related protein B-like isoform X5 [Biomphalaria glabrata])

HSP 1 Score: 119.8 bits (299), Expect = 2.800e-23
Identity = 57/135 (42.22%), Postives = 78/135 (57.78%), Query Frame = 0

Query:  135 QLSHGGHPSPHDPNKRHTWTTEEDRRLKELVHTVGPKKWGIISTHFNNRNAKQCHQRWHYVLKPCITREPWTEEEDQAIMQYQIQIGNKWSHIAKYLSGRTGYAIRNRYNFLQKRLLEENQRHFRPFLGPPVALH 270
            Q  H  H   +    +  WT EED R+ +LV+  GPK+W +IS H   R  KQC +RWH  L P I +  WTEEEDQ I Q   ++GN+W+ IAKYL GRT  AI+N +N   KR  E  +   R ++   ++L+
Sbjct:   55 QCQHRWHKVLNPDLIKGPWTREEDNRVIQLVNEYGPKRWTLISKHLKGRTGKQCRERWHNHLNPSIKKTAWTEEEDQLIYQLHRRLGNRWAEIAKYLPGRTDNAIKNHWNSTMKRKFEGEESSDRKYISNGLSLY 189

[Close]

BLAST of NO02G06050 vs. NCBI_GenBank
Match: XP_005852752.1 (myb-like dna-binding domain containing protein, partial [Nannochloropsis gaditana CCMP526] >EKU23079.1 myb-like dna-binding domain containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 118.6 bits (296), Expect = 6.200e-23
Identity = 48/109 (44.04%), Postives = 72/109 (66.06%), Query Frame = 0

Query:  148 NKRHTWTTEEDRRLKELVHTVGPKKWGIISTHFNNRNAKQCHQRWHYVLKPCITREPWTEEEDQAIMQYQIQIGNKWSHIAKYLSGRTGYAIRNRYNFLQKRLLEENQR 257
            +K+  W  EED  L+ LVH  G + WG I+ HF NRN KQCHQRW+Y L P +    WT EED+ I+ +Q  +GNKW+ IA ++ GRTG+A++NR + +  ++ +  ++
Sbjct:  168 SKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKMRKRERK 276

[Close]

BLAST of NO02G06050 vs. NCBI_GenBank
Match: EWM24948.1 (myb-like dna-binding domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 118.6 bits (296), Expect = 6.200e-23
Identity = 49/112 (43.75%), Postives = 73/112 (65.18%), Query Frame = 0

Query:  148 NKRHTWTTEEDRRLKELVHTVGPKKWGIISTHFNNRNAKQCHQRWHYVLKPCITREPWTEEEDQAIMQYQIQIGNKWSHIAKYLSGRTGYAIRNRYNFLQKRLLEENQRHFR 260
            +K+  W  EED  L+ LVH  G + WG I+ HF NRN KQCHQRW+Y L P +    WT EED+ I+ +Q  +GNKW+ IA ++ GRTG+A++NR + +  ++ +  ++  R
Sbjct:  211 SKKRPWKPEEDEYLRALVHRQGARDWGQIAEHFENRNGKQCHQRWNYFLSPTVHSGAWTAEEDEKIVNFQCLLGNKWARIATHIPGRTGHAVKNRAHQIANKIRKRERKPAR 322

[Close]

BLAST of NO02G06050 vs. NCBI_GenBank
Match: XP_012942102.1 (PREDICTED: myb-related protein B-like [Aplysia californica])

HSP 1 Score: 116.3 bits (290), Expect = 3.100e-22
Identity = 54/107 (50.47%), Postives = 67/107 (62.62%), Query Frame = 0

Query:  153 WTTEEDRRLKELVHTVGPKKWGIISTHFNNRNAKQCHQRWHYVLKPCITREPWTEEEDQAIMQYQIQIGNKWSHIAKYLSGRTGYAIRNRYNFLQKRL--LEENQRH 258
            W  EED R+ +LV   GPK+W +IS H   R  KQC +RWH  L P I +  WTEEEDQ I Q   ++GN+W+ IAKYL GRT  AI+N +N   KR   +EEN  H
Sbjct:  111 WAKEEDNRVIQLVKEYGPKRWTLISKHLKGRTGKQCRERWHNHLNPSIKKSAWTEEEDQLIYQLHRRLGNRWAAIAKYLPGRTDNAIKNHWNSTMKRKFEVEENTDH 217

The following BLAST results are available for this feature:

BLAST of NO02G06050 vs. NCBI_GenBank

BLAST of NO02G06050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM30072.1	2.000e-61	86.82	transcriptional activator myb [Nannochloropsis gad...	[more]
EWM24723.1	4.600e-34	59.06	myb family transcription factor [Nannochloropsis g...	[more]
XP_013066115.1	2.800e-23	42.22	PREDICTED: transcriptional activator Myb-like isof...	[more]
XP_013066116.1	2.800e-23	42.22	PREDICTED: transcriptional activator Myb-like isof...	[more]
XP_013066117.1	2.800e-23	42.22	PREDICTED: transcriptional activator Myb-like isof...	[more]
XP_013066118.1	2.800e-23	42.22	PREDICTED: transcriptional activator Myb-like isof...	[more]
XP_013066119.1	2.800e-23	42.22	PREDICTED: myb-related protein B-like isoform X5 [...	[more]
XP_005852752.1	6.200e-23	44.04	myb-like dna-binding domain containing protein, pa...	[more]
EWM24948.1	6.200e-23	43.75	myb-like dna-binding domain containing protein [Na...	[more]
XP_012942102.1	3.100e-22	50.47	PREDICTED: myb-related protein B-like [Aplysia cal...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL019	nonsL019	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR032	ncniR032	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR004	ngnoR004	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK007301	NSK007301	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO02G06050.1	NO02G06050.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668114	gene_1198	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100173g5	gene575	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO02G06050.1	NO02G06050.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO02G06050 ID=NO02G06050|Name=NO02G06050|organism=Nannochloropsis oceanica|type=gene|length=1841bp
CTCACCTACCCCATTGTGTTACCCTCCGAAATGGAACACCACCTCTCTGC
CGCCGAGCTCCCTGTCCTGGACCGCGAGGAAGTAAACATGAGCGACCTGG
ACGAGGACGAGGAGGTACACAACCAAATTACCACTTCAAAACCCTACAAC
ACCACAAATCAAGGTCCCGCGTCGATAACGCCGAACTTGGCACCACTTCC
CGCCAAAGCCCAGCCCCCGGTTTACCTGCAACAGCAGGCAGAGCCTTTCA
TCCGTCCGCGTCTTGAACAGCAGCAGGCAGCCATGCCCATGAACCTGCCC
CCCCCCCTCCACACCATCTGGAATGgttccaccacgcccatgcccaagcc
gccgccgctgcctctgccgcgactggccactacccactaggccctcctcc
tcctcctcttcctccctcttcagCGCAACCTCACCAACAACCATCACAGC
AACTTCCCCACTTGGTCCATGCACCTTTCTTGGGCCTGCGCGGACTGGGT
CTGTCCCCACTCTATCACCACCGGCATGCCCAACTTTCGCACGGGGGCCA
CCCGAGCCCGCACGACCCTAACAAACGGCACACATGGACGACGGAGGAGG
ACCGCCGCTTGAAGGAGCTGGTGCACACAGTGGGCCCTAAGAAGTGGGGC
ATCATTTCGACGCATTTCAATAACCGCAACGCCAAGCAGTGCCACCAGCG
CTGGCATTACGTGCTCAAGCCCTGCATCACCCGCGAGCCATGGACGGAGG
AGGAGGACCAAGCAATCATGCAGTACCAGATTCAAATCGGCAATAAATGG
TCTCATATCGCCAAATACCTCTCGGGCCGCACGGGCTATGCCATCCGCAA
CCGCTACAACTTCTTGCAGAAGCGACTGCTCGAGGAGAATCAGCGCCACT
TCCGTCCTTTTCTCGGCCCGCCCGTAGCCTTGCACATGTACGCGGCAGCA
GCAGCGGCAACAGCAGTGGCGTCTGGAGAGAAAGAGAGACCGGGAAGGCA
AGGGAGAGATATAGCGGTGCAGCAGAATGAGGGGAGGCGGCGGGGGCGGG
ACGAGGAGATGGAGGACGAGGAGGACGGAGTACCCATGATGGAGGAGGAG
GAAGAGGAGGACGACGACGAAGAAGAGGAGGAAGAAGAAAACGTAGGAGT
GGCTAAGGACGATCGCGCGCACCCGCCCACGCTGTTGGATCCTTTGCCGG
TGCCTGCAGGCTGGTCACCCGCTATGGCGGCCACCTCGTCCCAATTAACT
TCTTCCGCTCCCTCCTTCCCCTTCTCCTCCACTTCCATCGCCCCGCAGCA
GCTAACAATGCCTCCATGCATTCCCACATCCTCCCCCGCTCCAGACACTA
CCAACTCCACGTCAAGCAGCGTCGCCATGTCCTCCGATCCCGCTCTCATC
GTGCACGCCTCTGTCTCTGCGCAAGCGCCCTCCTTCATCTCCACCTCCAA
CCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCCTTCACGGCACGTGCA
AGGCGGGCCCGGCGGCGGCTGCTGGCTTTTCCTCCTCCCTGTCCTCGGTA
CAGTCAGGAAAAGGAGTTGGGGGAGGAGGGGCTGATTTTCACGAGCAGCA
GTACCACGAGCAGCAGAAGAATGGCTCGCACTCATCGTTTGAGAATGCTG
TCTTTGCCAATTTGGAGCTGATGGCGACGGCGGCAGGGCAACAGCAGCAG
GTGCCAGTCCCCACCCCGGCACCGACGCCGAGAACGATCACGGGCGTTAA
TATAAACACGATGACGCAGACCCGGGAGGGAAAGGGGGAGATGCGGATGG
GGAAGACTGCGGAGGAAGGGCAGCAGCAGGGGGAGGTATAG

protein sequence of NO02G06050.1

>NO02G06050.1-protein ID=NO02G06050.1-protein|Name=NO02G06050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=571bp
MEHHLSAAELPVLDREEVNMSDLDEDEEVHNQITTSKPYNTTNQGPASIT
PNLAPLPAKAQPPVYLQQQAEPFIRPRLEQQQAAMPMNLPPPLHTIWNAQ
PHQQPSQQLPHLVHAPFLGLRGLGLSPLYHHRHAQLSHGGHPSPHDPNKR
HTWTTEEDRRLKELVHTVGPKKWGIISTHFNNRNAKQCHQRWHYVLKPCI
TREPWTEEEDQAIMQYQIQIGNKWSHIAKYLSGRTGYAIRNRYNFLQKRL
LEENQRHFRPFLGPPVALHMYAAAAAATAVASGEKERPGRQGRDIAVQQN
EGRRRGRDEEMEDEEDGVPMMEEEEEEDDDEEEEEEENVGVAKDDRAHPP
TLLDPLPVPAGWSPAMAATSSQLTSSAPSFPFSSTSIAPQQLTMPPCIPT
SSPAPDTTNSTSSSVAMSSDPALIVHASVSAQAPSFISTSNPSSSSSSSS
SALHGTCKAGPAAAAGFSSSLSSVQSGKGVGGGGADFHEQQYHEQQKNGS
HSSFENAVFANLELMATAAGQQQQVPVPTPAPTPRTITGVNINTMTQTRE
GKGEMRMGKTAEEGQQQGEV*

Synonyms

Publications